Wall clock time and date at job start Tue Mar 31 2020 19:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47261 * 2 1 4 4 C 1.50708 * 109.46714 * 119.99407 * 2 1 3 5 5 O 1.21278 * 119.99646 * 107.48752 * 4 2 1 6 6 N 1.34771 * 120.00029 * 287.48645 * 4 2 1 7 7 C 1.47505 * 118.75886 * 353.73048 * 6 4 2 8 8 C 1.53570 * 111.03287 * 138.34525 * 7 6 4 9 9 C 1.51530 * 109.57721 * 320.01957 * 8 7 6 10 10 O 1.42153 * 108.75601 * 91.40233 * 9 8 7 11 11 C 1.38013 * 119.44063 * 272.76876 * 10 9 8 12 12 H 1.08996 * 109.46870 * 303.42164 * 11 10 9 13 13 C 1.53006 * 109.47013 * 183.42923 * 11 10 9 14 14 N 1.46502 * 109.46883 * 64.98771 * 13 11 10 15 15 C 1.36937 * 119.99668 * 180.27469 * 14 13 11 16 16 H 1.08007 * 120.00002 * 359.72945 * 15 14 13 17 17 C 1.38806 * 120.00066 * 179.72510 * 15 14 13 18 18 N 1.31623 * 120.00073 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00377 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46672 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46888 * 119.99942 * 19 17 15 22 22 H 1.48501 * 109.47247 * 240.00671 * 19 17 15 23 23 C 1.45128 * 118.75394 * 173.70270 * 6 4 2 24 24 C 1.50696 * 109.47699 * 239.99338 * 2 1 3 25 25 C 1.39865 * 126.03930 * 300.03462 * 24 2 1 26 26 N 1.30838 * 108.20202 * 179.97438 * 25 24 2 27 27 N 1.40079 * 108.20598 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.03773 * 179.97438 * 27 26 25 29 29 C 1.34943 * 107.92626 * 359.75623 * 27 26 25 30 30 H 1.09003 * 109.46698 * 56.17115 * 1 2 3 31 31 H 1.08997 * 109.47464 * 176.16711 * 1 2 3 32 32 H 1.08997 * 109.47452 * 296.17626 * 1 2 3 33 33 H 1.09001 * 109.16610 * 258.73920 * 7 6 4 34 34 H 1.08994 * 109.16933 * 17.99334 * 7 6 4 35 35 H 1.09002 * 109.45312 * 80.05236 * 8 7 6 36 36 H 1.09001 * 109.45305 * 200.00781 * 8 7 6 37 37 H 1.09001 * 109.59222 * 211.18161 * 9 8 7 38 38 H 1.08997 * 109.59590 * 331.47168 * 9 8 7 39 39 H 1.08999 * 109.47052 * 304.99340 * 13 11 10 40 40 H 1.08999 * 109.46793 * 184.99073 * 13 11 10 41 41 H 0.96994 * 120.00316 * 0.02562 * 14 13 11 42 42 H 0.97000 * 120.00000 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.45587 * 149.28957 * 23 6 4 44 44 H 1.08991 * 109.46211 * 29.32993 * 23 6 4 45 45 H 1.08001 * 125.90058 * 359.97438 * 25 24 2 46 46 H 1.09007 * 109.47042 * 90.02792 * 28 27 26 47 47 H 1.09002 * 109.47449 * 210.02380 * 28 27 26 48 48 H 1.09004 * 109.47438 * 330.02771 * 28 27 26 49 49 H 1.08001 * 126.13096 * 180.23636 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.5319 -1.8112 1.1338 6 7 1.9261 -0.1222 2.4386 7 6 1.4442 1.2700 2.5103 8 6 0.4637 1.4545 3.6777 9 6 -0.4456 0.2461 3.7728 10 8 0.1414 -0.6992 4.6574 11 6 1.0427 -1.6208 4.1646 12 1 0.5771 -2.1901 3.3602 13 6 1.4631 -2.5731 5.2861 14 7 0.3046 -3.3576 5.7204 15 6 0.4390 -4.2785 6.7249 16 1 1.4001 -4.4296 7.1939 17 6 -0.6599 -5.0178 7.1404 18 7 -1.8310 -4.8340 6.5685 19 14 -0.4764 -6.2746 8.5101 20 1 0.9315 -6.2900 8.9823 21 1 -1.3722 -5.9123 9.6376 22 1 -0.8424 -7.6202 7.9996 23 6 2.2898 -0.8830 3.6198 24 6 2.0324 -0.7105 -1.2303 25 6 1.7731 -2.0407 -1.5759 26 7 2.3771 -2.2939 -2.7086 27 7 3.0403 -1.1308 -3.1205 28 6 3.8399 -0.9802 -4.3387 29 6 2.8085 -0.1723 -2.1994 30 1 -0.3633 0.5721 -0.8537 31 1 -0.3634 -1.0253 -0.0687 32 1 -0.3634 0.4533 0.9222 33 1 2.2954 1.9366 2.6492 34 1 0.9404 1.5228 1.5774 35 1 1.0223 1.5625 4.6074 36 1 -0.1372 2.3482 3.5093 37 1 -1.4192 0.5505 4.1569 38 1 -0.5656 -0.1998 2.7854 39 1 1.8474 -1.9964 6.1274 40 1 2.2402 -3.2443 4.9205 41 1 -0.5585 -3.2221 5.2990 42 1 -2.5990 -5.3503 6.8591 43 1 2.6739 -0.2065 4.3833 44 1 3.0582 -1.6112 3.3604 45 1 1.1773 -2.7385 -1.0062 46 1 3.1993 -0.6459 -5.1548 47 1 4.6257 -0.2441 -4.1689 48 1 4.2898 -1.9383 -4.5989 49 1 3.1787 0.8419 -2.2287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202260814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:40 Heat of formation + Delta-G solvation = 27.243635 kcal Electronic energy + Delta-G solvation = -30183.630396 eV Core-core repulsion = 26148.765218 eV Total energy + Delta-G solvation = -4034.865178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52658 -40.46520 -38.43385 -35.65688 -34.69007 -34.48474 -32.90463 -32.62196 -30.85333 -29.75544 -28.70517 -26.78922 -26.65441 -25.34752 -24.06868 -22.60894 -21.66206 -21.25110 -20.93073 -20.54613 -18.86404 -17.42842 -17.04281 -16.95889 -16.48686 -16.15376 -15.66796 -15.58210 -15.08209 -14.74867 -14.38751 -14.33055 -14.15644 -13.81471 -13.54460 -13.16577 -13.10351 -12.99838 -12.96546 -12.80881 -12.64690 -12.36304 -12.21560 -11.95401 -11.91401 -11.75531 -11.56828 -11.24101 -10.87744 -10.75632 -10.72574 -10.62993 -10.18519 -9.94677 -9.70078 -9.61640 -9.45971 -9.33087 -8.78827 -8.55076 -8.46444 -6.79588 -5.65079 -2.92913 1.71918 2.35299 2.61991 2.64474 3.06501 3.50990 3.55998 3.58623 4.01355 4.23732 4.39517 4.55462 4.62856 4.68240 4.72583 4.76803 4.81693 4.92263 4.97021 4.99656 5.06383 5.19486 5.30242 5.31213 5.40489 5.49302 5.50951 5.54513 5.55550 5.67085 5.69039 5.69473 5.82999 5.90459 6.00139 6.06158 6.08989 6.16433 6.39136 6.53689 6.60117 6.72682 6.81182 6.84608 7.31570 7.58871 7.79698 8.06559 8.22270 8.53354 9.64862 10.23466 10.59391 11.58012 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.002739 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.328223 B =10219.499134 C =11337.696919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 H 0.095 0.905 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.611 5.611 7 C 0.100 3.900 8 C -0.167 4.167 9 C 0.071 3.929 10 O -0.368 6.368 11 C 0.090 3.910 12 H 0.051 0.949 13 C 0.166 3.834 14 N -0.726 5.726 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.081 3.919 24 C -0.219 4.219 25 C 0.087 3.913 26 N -0.302 5.302 27 N -0.381 5.381 28 C 0.104 3.896 29 C 0.057 3.943 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.387 0.613 42 H 0.253 0.747 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.181 0.819 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.477 20.074 -20.374 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 H 0.113 0.887 4 C 0.299 3.701 5 O -0.396 6.396 6 N -0.345 5.345 7 C -0.022 4.022 8 C -0.206 4.206 9 C -0.005 4.005 10 O -0.286 6.286 11 C 0.030 3.970 12 H 0.069 0.931 13 C 0.037 3.963 14 N -0.370 5.370 15 C -0.366 4.366 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.043 4.043 24 C -0.231 4.231 25 C -0.099 4.099 26 N -0.122 5.122 27 N -0.163 5.163 28 C -0.037 4.037 29 C -0.089 4.089 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.198 0.802 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.148 18.516 -21.157 29.566 hybrid contribution -0.246 0.187 0.969 1.017 sum 8.903 18.703 -20.189 28.925 Atomic orbital electron populations 1.21897 0.92182 1.03594 1.02562 1.19511 0.97134 0.98864 0.89575 0.88717 1.20699 0.78597 0.86430 0.84387 1.90723 1.42807 1.20287 1.85814 1.47897 1.66290 1.13840 1.06463 1.22093 0.97804 0.82039 1.00265 1.22518 0.98724 1.00007 0.99322 1.22157 0.95666 0.88299 0.94420 1.86435 1.59294 1.45192 1.37704 1.22266 0.88354 0.89058 0.97360 0.93117 1.20612 0.91702 0.90891 0.93047 1.42237 1.07292 1.44215 1.43263 1.19278 0.95004 1.12187 1.10113 0.91153 1.24733 0.95620 1.00574 1.00240 1.69689 0.99624 1.44258 1.44591 0.86115 0.77130 0.81245 0.81717 1.20589 1.21958 1.21951 1.22399 0.99128 0.96276 0.86490 1.19464 1.09043 0.95637 0.98983 1.23709 0.97888 0.95630 0.92679 1.77416 1.13686 1.05516 1.15620 1.48400 1.40446 1.08300 1.19167 1.21806 0.94271 1.04056 0.83617 1.22189 1.00139 0.95562 0.91033 0.91257 0.91531 0.91506 0.91657 0.89452 0.89999 0.89778 0.89409 0.93210 0.95535 0.94797 0.77965 0.93697 0.90091 0.88833 0.80174 0.90930 0.89699 0.89341 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.69 37.16 0.32 -0.89 16 2 C -0.03 -0.27 2.21 -92.92 -0.21 -0.47 16 3 H 0.09 0.64 7.04 -51.93 -0.37 0.27 16 4 C 0.51 6.76 6.83 -10.98 -0.08 6.69 16 5 O -0.52 -9.15 14.62 5.56 0.08 -9.06 16 6 N -0.61 -7.35 2.19 -172.47 -0.38 -7.73 16 7 C 0.10 0.83 5.42 -3.20 -0.02 0.81 16 8 C -0.17 -1.52 5.79 -27.18 -0.16 -1.68 16 9 C 0.07 0.91 6.37 36.41 0.23 1.14 16 10 O -0.37 -6.51 9.38 -26.53 -0.25 -6.76 16 11 C 0.09 1.62 2.68 -25.78 -0.07 1.55 16 12 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 13 C 0.17 3.60 5.92 -4.04 -0.02 3.57 16 14 N -0.73 -19.69 5.54 -59.90 -0.33 -20.02 16 15 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 18 N -0.93 -29.38 13.06 55.49 0.72 -28.66 16 19 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 C 0.08 1.17 4.92 -3.83 -0.02 1.15 16 24 C -0.22 -2.44 4.49 -105.06 -0.47 -2.92 16 25 C 0.09 1.18 10.45 -17.37 -0.18 1.00 16 26 N -0.30 -4.15 12.58 30.62 0.39 -3.77 16 27 N -0.38 -3.93 4.01 -68.16 -0.27 -4.21 16 28 C 0.10 0.58 11.47 59.85 0.69 1.27 16 29 C 0.06 0.52 11.38 -17.22 -0.20 0.33 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.07 0.51 4.75 -51.93 -0.25 0.27 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.54 4.32 -51.93 -0.22 0.31 16 35 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.62 5.87 -51.93 -0.30 0.32 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.39 11.13 7.65 -40.82 -0.31 10.82 16 42 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 44 H 0.09 1.49 7.19 -51.93 -0.37 1.11 16 45 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -38.14 388.91 -7.32 -45.46 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.70 Total: 6.73 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.42 Total: 3.92 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.13 Total: -64.38 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.17 Total: -15.82 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.14 -7.32 -45.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.707 kcal (2) G-P(sol) polarization free energy of solvation -38.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds