Wall clock time and date at job start Tue Mar 31 2020 19:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47261 * 2 1 4 4 C 1.50708 * 109.46714 * 119.99407 * 2 1 3 5 5 O 1.21278 * 119.99646 * 107.48752 * 4 2 1 6 6 N 1.34771 * 120.00029 * 287.48645 * 4 2 1 7 7 C 1.47505 * 118.75886 * 353.73048 * 6 4 2 8 8 C 1.53570 * 111.03287 * 138.34525 * 7 6 4 9 9 C 1.51530 * 109.57721 * 320.01957 * 8 7 6 10 10 O 1.42153 * 108.75601 * 91.40233 * 9 8 7 11 11 C 1.38013 * 119.44063 * 272.76876 * 10 9 8 12 12 H 1.08996 * 109.46870 * 303.42164 * 11 10 9 13 13 C 1.53006 * 109.47013 * 183.42923 * 11 10 9 14 14 N 1.46502 * 109.46883 * 64.98771 * 13 11 10 15 15 C 1.36937 * 119.99668 * 180.27469 * 14 13 11 16 16 H 1.08007 * 120.00002 * 359.72945 * 15 14 13 17 17 C 1.38806 * 120.00066 * 179.72510 * 15 14 13 18 18 N 1.31623 * 120.00073 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00377 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46672 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46888 * 119.99942 * 19 17 15 22 22 H 1.48501 * 109.47247 * 240.00671 * 19 17 15 23 23 C 1.45128 * 118.75394 * 173.70270 * 6 4 2 24 24 C 1.50696 * 109.47699 * 239.99338 * 2 1 3 25 25 C 1.39865 * 126.03930 * 300.03462 * 24 2 1 26 26 N 1.30838 * 108.20202 * 179.97438 * 25 24 2 27 27 N 1.40079 * 108.20598 * 359.97438 * 26 25 24 28 28 C 1.46500 * 126.03773 * 179.97438 * 27 26 25 29 29 C 1.34943 * 107.92626 * 359.75623 * 27 26 25 30 30 H 1.09003 * 109.46698 * 56.17115 * 1 2 3 31 31 H 1.08997 * 109.47464 * 176.16711 * 1 2 3 32 32 H 1.08997 * 109.47452 * 296.17626 * 1 2 3 33 33 H 1.09001 * 109.16610 * 258.73920 * 7 6 4 34 34 H 1.08994 * 109.16933 * 17.99334 * 7 6 4 35 35 H 1.09002 * 109.45312 * 80.05236 * 8 7 6 36 36 H 1.09001 * 109.45305 * 200.00781 * 8 7 6 37 37 H 1.09001 * 109.59222 * 211.18161 * 9 8 7 38 38 H 1.08997 * 109.59590 * 331.47168 * 9 8 7 39 39 H 1.08999 * 109.47052 * 304.99340 * 13 11 10 40 40 H 1.08999 * 109.46793 * 184.99073 * 13 11 10 41 41 H 0.96994 * 120.00316 * 0.02562 * 14 13 11 42 42 H 0.97000 * 120.00000 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.45587 * 149.28957 * 23 6 4 44 44 H 1.08991 * 109.46211 * 29.32993 * 23 6 4 45 45 H 1.08001 * 125.90058 * 359.97438 * 25 24 2 46 46 H 1.09007 * 109.47042 * 90.02792 * 28 27 26 47 47 H 1.09002 * 109.47449 * 210.02380 * 28 27 26 48 48 H 1.09004 * 109.47438 * 330.02771 * 28 27 26 49 49 H 1.08001 * 126.13096 * 180.23636 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.5319 -1.8112 1.1338 6 7 1.9261 -0.1222 2.4386 7 6 1.4442 1.2700 2.5103 8 6 0.4637 1.4545 3.6777 9 6 -0.4456 0.2461 3.7728 10 8 0.1414 -0.6992 4.6574 11 6 1.0427 -1.6208 4.1646 12 1 0.5771 -2.1901 3.3602 13 6 1.4631 -2.5731 5.2861 14 7 0.3046 -3.3576 5.7204 15 6 0.4390 -4.2785 6.7249 16 1 1.4001 -4.4296 7.1939 17 6 -0.6599 -5.0178 7.1404 18 7 -1.8310 -4.8340 6.5685 19 14 -0.4764 -6.2746 8.5101 20 1 0.9315 -6.2900 8.9823 21 1 -1.3722 -5.9123 9.6376 22 1 -0.8424 -7.6202 7.9996 23 6 2.2898 -0.8830 3.6198 24 6 2.0324 -0.7105 -1.2303 25 6 1.7731 -2.0407 -1.5759 26 7 2.3771 -2.2939 -2.7086 27 7 3.0403 -1.1308 -3.1205 28 6 3.8399 -0.9802 -4.3387 29 6 2.8085 -0.1723 -2.1994 30 1 -0.3633 0.5721 -0.8537 31 1 -0.3634 -1.0253 -0.0687 32 1 -0.3634 0.4533 0.9222 33 1 2.2954 1.9366 2.6492 34 1 0.9404 1.5228 1.5774 35 1 1.0223 1.5625 4.6074 36 1 -0.1372 2.3482 3.5093 37 1 -1.4192 0.5505 4.1569 38 1 -0.5656 -0.1998 2.7854 39 1 1.8474 -1.9964 6.1274 40 1 2.2402 -3.2443 4.9205 41 1 -0.5585 -3.2221 5.2990 42 1 -2.5990 -5.3503 6.8591 43 1 2.6739 -0.2065 4.3833 44 1 3.0582 -1.6112 3.3604 45 1 1.1773 -2.7385 -1.0062 46 1 3.1993 -0.6459 -5.1548 47 1 4.6257 -0.2441 -4.1689 48 1 4.2898 -1.9383 -4.5989 49 1 3.1787 0.8419 -2.2287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202260814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:39 Heat of formation + Delta-G solvation = -0.514490 kcal Electronic energy + Delta-G solvation = -30184.834079 eV Core-core repulsion = 26148.765218 eV Total energy + Delta-G solvation = -4036.068860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.35084 -41.48444 -39.63583 -36.91833 -36.21113 -35.46161 -34.24072 -33.47955 -32.63538 -30.60845 -30.04112 -27.87724 -27.35831 -26.70023 -25.32131 -24.16475 -22.82672 -22.24852 -22.01235 -21.42158 -19.76743 -19.26457 -18.29983 -17.87357 -17.65320 -17.26570 -16.76774 -16.47935 -16.29016 -16.07780 -15.66151 -15.23219 -15.16640 -15.07645 -14.81805 -14.65979 -14.38727 -13.97879 -13.84233 -13.67263 -13.54064 -13.37792 -13.26813 -13.09448 -13.03468 -12.80161 -12.62877 -12.55101 -12.54572 -12.23364 -12.06329 -11.88815 -11.78155 -11.44990 -11.38244 -10.99648 -10.68145 -10.48882 -10.30602 -9.55728 -9.32262 -9.01983 -7.94815 -5.24637 0.97847 1.45785 1.48238 1.58313 1.64651 1.68726 1.76001 2.16751 2.55818 2.76709 3.38666 3.54700 3.59712 3.68639 3.91178 3.99990 4.03422 4.10200 4.14011 4.20573 4.23773 4.31373 4.37993 4.38432 4.43317 4.46739 4.54479 4.58198 4.70753 4.73746 4.76530 4.81664 4.85970 4.89914 4.91414 5.00064 5.11212 5.14029 5.18324 5.25522 5.37397 5.46774 5.60850 5.65723 6.20108 6.25988 6.39582 6.74941 6.79782 7.24707 7.31992 8.06032 8.31474 9.29358 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.002739 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.328223 B =10219.499134 C =11337.696919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.016 4.016 3 H 0.140 0.860 4 C 0.504 3.496 5 O -0.577 6.577 6 N -0.609 5.609 7 C 0.095 3.905 8 C -0.157 4.157 9 C 0.060 3.940 10 O -0.398 6.398 11 C 0.108 3.892 12 H 0.017 0.983 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.246 4.246 16 H 0.077 0.923 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.293 1.293 23 C 0.095 3.905 24 C -0.241 4.241 25 C 0.062 3.938 26 N -0.347 5.347 27 N -0.382 5.382 28 C 0.094 3.906 29 C 0.075 3.925 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.157 0.843 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.081 0.919 49 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.807 23.953 -21.176 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 H 0.157 0.843 4 C 0.293 3.707 5 O -0.455 6.455 6 N -0.341 5.341 7 C -0.026 4.026 8 C -0.195 4.195 9 C -0.016 4.016 10 O -0.317 6.317 11 C 0.048 3.952 12 H 0.035 0.965 13 C 0.035 3.965 14 N -0.382 5.382 15 C -0.378 4.378 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.217 1.217 22 H -0.220 1.220 23 C -0.030 4.030 24 C -0.253 4.253 25 C -0.123 4.123 26 N -0.169 5.169 27 N -0.164 5.164 28 C -0.046 4.046 29 C -0.072 4.072 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.175 0.825 46 H 0.108 0.892 47 H 0.137 0.863 48 H 0.100 0.900 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.505 22.447 -21.971 33.121 hybrid contribution -0.647 -0.964 1.137 1.625 sum 9.858 21.483 -20.835 31.509 Atomic orbital electron populations 1.21896 0.91532 1.02323 1.04134 1.19560 0.97411 1.00157 0.86697 0.84278 1.21522 0.77545 0.85914 0.85669 1.90705 1.45317 1.22822 1.86676 1.48014 1.65757 1.15174 1.05177 1.22464 0.98928 0.79827 1.01337 1.22443 0.98409 0.99282 0.99364 1.22489 0.96784 0.88757 0.93556 1.86351 1.59680 1.45944 1.39686 1.21834 0.89944 0.88903 0.94564 0.96465 1.20754 0.90055 0.91252 0.94460 1.42439 1.08136 1.44711 1.42962 1.19712 0.95316 1.12406 1.10324 0.90478 1.25657 0.95334 1.03002 1.03120 1.69860 1.00377 1.45567 1.46369 0.84990 0.77784 0.78101 0.78373 1.18894 1.21666 1.21990 1.22032 0.96544 0.96392 0.88032 1.19701 1.10367 0.94785 1.00425 1.23600 0.98585 0.97007 0.93109 1.77308 1.15299 1.08038 1.16290 1.48801 1.39750 1.07510 1.20304 1.22195 0.94995 1.04853 0.82567 1.22917 0.98027 0.96961 0.89320 0.88782 0.94536 0.90478 0.88798 0.86551 0.90931 0.85925 0.88881 0.93363 0.94935 0.95053 0.79526 0.93990 0.88143 0.90747 0.82547 0.89203 0.86276 0.90042 0.76198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.69 71.98 0.63 -1.50 16 2 C -0.02 -0.27 2.21 -12.29 -0.03 -0.30 16 3 H 0.14 1.08 7.04 -2.39 -0.02 1.06 16 4 C 0.50 13.08 6.83 87.66 0.60 13.68 16 5 O -0.58 -21.30 14.62 -3.02 -0.04 -21.35 16 6 N -0.61 -13.73 2.19 -817.98 -1.79 -15.52 16 7 C 0.09 1.16 5.42 86.38 0.47 1.63 16 8 C -0.16 -2.30 5.79 30.30 0.18 -2.12 16 9 C 0.06 1.46 6.37 71.50 0.46 1.91 16 10 O -0.40 -14.31 9.38 -117.84 -1.11 -15.41 16 11 C 0.11 4.06 2.68 31.21 0.08 4.14 16 12 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 13 C 0.16 7.32 5.92 86.38 0.51 7.84 16 14 N -0.74 -41.86 5.54 -343.44 -1.90 -43.76 16 15 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 17 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 18 N -0.97 -63.00 13.06 21.65 0.28 -62.72 16 19 Si 0.98 48.57 29.55 68.60 2.03 50.59 16 20 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 23 C 0.09 2.77 4.92 87.25 0.43 3.19 16 24 C -0.24 -5.09 4.49 -20.15 -0.09 -5.18 16 25 C 0.06 1.79 10.45 85.23 0.89 2.68 16 26 N -0.35 -9.93 12.58 -57.03 -0.72 -10.64 16 27 N -0.38 -7.27 4.01 -369.55 -1.48 -8.75 16 28 C 0.09 0.82 11.47 127.77 1.47 2.29 16 29 C 0.08 1.13 11.38 83.54 0.95 2.09 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.77 7.91 -2.39 -0.02 0.75 16 32 H 0.08 0.97 4.75 -2.39 -0.01 0.96 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 0.78 4.32 -2.39 -0.01 0.77 16 35 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.18 5.87 -2.39 -0.01 1.17 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.37 22.68 7.65 -92.71 -0.71 21.97 16 42 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 44 H 0.07 2.46 7.19 -2.39 -0.02 2.45 16 45 H 0.16 4.95 8.06 -2.91 -0.02 4.93 16 46 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -89.96 388.91 3.36 -86.60 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.25 Total: 28.94 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 7.84 Total: 12.01 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -5.61 Total: -141.39 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.15 Total: -36.76 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.59 kcal Total: -89.96 3.36 -86.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.090 kcal (2) G-P(sol) polarization free energy of solvation -89.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds