Wall clock time and date at job start Tue Mar 31 2020 19:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47040 * 2 1 4 4 O 1.42905 * 109.47068 * 119.99772 * 2 1 3 5 5 C 1.42895 * 113.99875 * 270.00470 * 4 2 1 6 6 C 1.50706 * 109.47299 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99252 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00052 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63232 * 359.72136 * 8 6 5 10 10 C 1.53627 * 108.54009 * 126.36695 * 9 8 6 11 11 C 1.53039 * 109.24350 * 54.85733 * 10 9 8 12 12 N 1.46496 * 109.46182 * 178.48674 * 11 10 9 13 13 C 1.36942 * 120.00325 * 275.06820 * 12 11 10 14 14 H 1.08002 * 119.99721 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99915 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99517 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46844 * 90.00669 * 17 15 13 19 19 H 1.48497 * 109.47240 * 209.99986 * 17 15 13 20 20 H 1.48494 * 109.47377 * 330.00426 * 17 15 13 21 21 C 1.53040 * 109.53707 * 298.51014 * 11 10 9 22 22 C 1.46935 * 120.62795 * 179.97438 * 8 6 5 23 23 C 1.50694 * 109.47307 * 239.99872 * 2 1 3 24 24 N 1.30502 * 125.64996 * 285.17773 * 23 2 1 25 25 C 1.34128 * 109.25609 * 180.29462 * 24 23 2 26 26 C 1.34670 * 108.02237 * 359.72151 * 25 24 23 27 27 N 1.35046 * 125.65115 * 105.00393 * 23 2 1 28 28 C 1.46499 * 126.39639 * 359.97025 * 27 23 2 29 29 H 1.09002 * 109.46975 * 60.00349 * 1 2 3 30 30 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47508 * 300.00355 * 1 2 3 32 32 H 1.09001 * 109.47135 * 299.99149 * 5 4 2 33 33 H 1.09000 * 109.47795 * 59.99748 * 5 4 2 34 34 H 1.09000 * 109.58243 * 246.19932 * 9 8 6 35 35 H 1.08988 * 109.58915 * 6.62508 * 9 8 6 36 36 H 1.08990 * 109.63450 * 294.86284 * 10 9 8 37 37 H 1.09002 * 109.45663 * 174.73720 * 10 9 8 38 38 H 1.09007 * 109.45103 * 58.51838 * 11 10 9 39 39 H 0.97005 * 120.00003 * 95.06877 * 12 11 10 40 40 H 0.96998 * 119.99877 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.49632 * 301.41116 * 21 11 10 42 42 H 1.09007 * 109.52389 * 181.33451 * 21 11 10 43 43 H 1.09003 * 109.58614 * 353.37646 * 22 8 6 44 44 H 1.09000 * 109.58593 * 113.65765 * 22 8 6 45 45 H 1.07999 * 125.99228 * 179.72379 * 25 24 23 46 46 H 1.07997 * 126.59514 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47391 * 269.71816 * 28 27 23 48 48 H 1.09001 * 109.46813 * 149.71873 * 28 27 23 49 49 H 1.09004 * 109.47041 * 29.72000 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7001 -0.6283 3.4615 7 8 2.8732 -1.8225 3.3401 8 7 2.9550 -0.0267 4.6403 9 6 2.7560 1.4201 4.8008 10 6 1.8415 1.6559 6.0125 11 6 2.4410 0.9643 7.2391 12 7 1.5913 1.2164 8.4055 13 6 1.7527 2.3640 9.1351 14 1 2.5067 3.0831 8.8508 15 6 0.9471 2.6030 10.2400 16 7 0.0286 1.7265 10.5868 17 14 1.1678 4.1681 11.2355 18 1 0.2964 5.2348 10.6805 19 1 0.7961 3.9116 12.6502 20 1 2.5862 4.6023 11.1674 21 6 2.5262 -0.5427 6.9864 22 6 3.4426 -0.8044 5.7876 23 6 2.0323 -0.7104 -1.2304 24 7 2.0241 -2.0016 -1.4198 25 6 2.5524 -2.2757 -2.6218 26 6 2.8956 -1.1097 -3.2018 27 7 2.5626 -0.1162 -2.3210 28 6 2.7516 1.3227 -2.5215 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.9319 0.9513 2.0451 33 1 1.2537 0.6547 2.5589 34 1 3.7181 1.9051 4.9658 35 1 2.2886 1.8264 3.9040 36 1 0.8525 1.2450 5.8103 37 1 1.7590 2.7260 6.2024 38 1 3.4401 1.3582 7.4257 39 1 0.9143 0.5704 8.6611 40 1 -0.5340 1.8934 11.3591 41 1 1.5306 -0.9329 6.7751 42 1 2.9312 -1.0377 7.8690 43 1 3.4283 -1.8663 5.5419 44 1 4.4605 -0.4991 6.0299 45 1 2.6802 -3.2590 -3.0496 46 1 3.3473 -0.9829 -4.1745 47 1 1.8648 1.7431 -2.9956 48 1 3.6189 1.4896 -3.1604 49 1 2.9120 1.8058 -1.5577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203527102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:43 Heat of formation + Delta-G solvation = 4.656379 kcal Electronic energy + Delta-G solvation = -29010.661182 eV Core-core repulsion = 24974.816547 eV Total energy + Delta-G solvation = -4035.844635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39709 -40.13255 -38.33825 -37.12472 -34.50166 -34.38207 -32.65827 -32.07688 -30.96292 -29.41616 -28.97196 -27.82692 -27.39107 -24.77333 -23.86307 -23.03261 -22.49469 -21.62472 -20.39258 -20.13245 -18.96079 -17.80007 -17.23766 -17.06069 -16.67458 -16.28929 -16.02933 -15.58664 -15.03521 -14.80638 -14.68868 -14.25326 -13.85304 -13.78647 -13.70958 -13.51873 -13.48429 -13.26609 -13.16311 -13.13229 -12.94487 -12.51474 -12.28924 -12.22134 -11.94568 -11.59338 -11.34237 -11.00270 -10.91021 -10.84218 -10.50191 -10.26406 -10.16564 -10.04793 -9.89345 -9.85679 -9.70984 -9.61110 -8.94381 -8.71015 -8.50875 -7.01285 -5.80582 -3.10092 1.64265 2.23692 2.65780 2.73335 2.98332 3.39580 3.44796 3.46976 3.63804 4.01941 4.20027 4.28249 4.53923 4.55485 4.58829 4.61916 4.75871 4.80553 4.86928 4.97742 5.04240 5.13285 5.27253 5.29159 5.32764 5.38022 5.38655 5.45270 5.50601 5.56837 5.70699 5.87463 5.91947 5.94733 5.99154 6.20380 6.32322 6.36596 6.45956 6.48328 6.57160 6.72026 6.84130 6.88339 7.00712 7.47589 7.64815 7.89702 8.25615 8.37550 9.48725 10.06401 10.40952 11.41857 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.001995 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.778527 B =14033.921507 C =14524.174703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.073 0.927 4 O -0.336 6.336 5 C 0.042 3.958 6 C 0.516 3.484 7 O -0.521 6.521 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.151 4.151 11 C 0.179 3.821 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.139 4.139 22 C 0.118 3.882 23 C 0.203 3.797 24 N -0.457 5.457 25 C -0.028 4.028 26 C -0.057 4.057 27 N -0.458 5.458 28 C 0.068 3.932 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.171 0.829 46 H 0.176 0.824 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 1.344 -28.475 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.117 3.883 3 H 0.090 0.910 4 O -0.252 6.252 5 C -0.038 4.038 6 C 0.302 3.698 7 O -0.397 6.397 8 N -0.342 5.342 9 C -0.017 4.017 10 C -0.192 4.192 11 C 0.068 3.932 12 N -0.364 5.364 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.178 4.178 22 C -0.004 4.004 23 C -0.060 4.060 24 N -0.175 5.175 25 C -0.177 4.177 26 C -0.190 4.190 27 N -0.142 5.142 28 C -0.075 4.075 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.792 0.222 -27.883 28.479 hybrid contribution 0.097 1.767 -0.033 1.770 sum 5.890 1.989 -27.916 28.600 Atomic orbital electron populations 1.22242 0.93428 1.04489 1.02435 1.20035 0.94209 0.92932 0.81156 0.90956 1.88215 1.86367 1.32626 1.18014 1.22379 1.01389 0.93016 0.86981 1.20031 0.78292 0.88108 0.83369 1.90733 1.51350 1.14838 1.82741 1.48103 1.66039 1.09295 1.10771 1.21979 1.00496 0.79541 0.99720 1.22763 0.98793 1.02583 0.95100 1.20162 0.94449 0.91461 0.87090 1.42444 1.41269 1.23675 1.29057 1.19222 1.14717 0.97067 1.06169 0.91173 1.24761 0.98687 0.98501 0.99011 1.69661 1.23861 1.35634 1.28776 0.86204 0.77471 0.82953 0.79623 1.21761 1.21785 1.20773 1.22204 1.00017 0.98593 0.96993 1.21610 0.97110 0.97066 0.84613 1.22801 1.03253 0.89240 0.90657 1.70307 1.18679 1.11813 1.16723 1.22427 1.04261 0.98285 0.92726 1.22721 1.09785 0.88172 0.98294 1.45268 1.46473 1.07654 1.14851 1.22102 1.03592 0.77751 1.04062 0.91587 0.90291 0.91112 0.90476 0.89843 0.91208 0.90878 0.92062 0.90606 0.93386 0.78221 0.93466 0.91748 0.90460 0.89266 0.91497 0.81145 0.80675 0.90216 0.89292 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.51 37.16 0.35 -1.11 16 2 C 0.18 1.76 3.09 -27.89 -0.09 1.67 16 3 H 0.07 0.47 6.38 -51.93 -0.33 0.14 16 4 O -0.34 -4.61 9.50 -55.14 -0.52 -5.13 16 5 C 0.04 0.47 4.57 36.01 0.16 0.64 16 6 C 0.52 7.78 7.78 -10.98 -0.09 7.69 16 7 O -0.52 -10.17 15.91 -14.35 -0.23 -10.40 16 8 N -0.61 -8.38 2.97 -172.53 -0.51 -8.90 16 9 C 0.11 1.25 6.37 -3.49 -0.02 1.23 16 10 C -0.15 -2.37 5.67 -26.39 -0.15 -2.52 16 11 C 0.18 3.30 2.73 -67.89 -0.19 3.12 16 12 N -0.72 -17.42 5.12 -53.38 -0.27 -17.70 16 13 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 17 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.14 -2.28 5.55 -26.64 -0.15 -2.43 16 22 C 0.12 1.71 6.43 -3.73 -0.02 1.69 16 23 C 0.20 2.34 6.79 -155.41 -1.05 1.28 16 24 N -0.46 -6.50 11.25 -10.82 -0.12 -6.62 16 25 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 26 C -0.06 -0.47 11.58 -16.56 -0.19 -0.66 16 27 N -0.46 -3.81 3.15 -121.28 -0.38 -4.19 16 28 C 0.07 0.24 10.94 59.85 0.65 0.90 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 32 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.08 0.76 7.43 -51.93 -0.39 0.37 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.65 5.93 -51.94 -0.31 0.34 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.09 0.23 6.90 -51.93 -0.36 -0.13 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -37.36 399.08 -9.48 -46.84 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.92 Total: 6.28 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.23 Total: 3.96 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.56 Total: -64.35 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.75 Total: -15.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.36 -9.48 -46.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203527102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.499 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds