Wall clock time and date at job start Tue Mar 31 2020 19:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47040 * 2 1 4 4 O 1.42905 * 109.47068 * 119.99772 * 2 1 3 5 5 C 1.42895 * 113.99875 * 270.00470 * 4 2 1 6 6 C 1.50706 * 109.47299 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99252 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00052 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63232 * 359.72136 * 8 6 5 10 10 C 1.53627 * 108.54009 * 126.36695 * 9 8 6 11 11 C 1.53039 * 109.24350 * 54.85733 * 10 9 8 12 12 N 1.46496 * 109.46182 * 178.48674 * 11 10 9 13 13 C 1.36942 * 120.00325 * 275.06820 * 12 11 10 14 14 H 1.08002 * 119.99721 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99915 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99517 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46844 * 90.00669 * 17 15 13 19 19 H 1.48497 * 109.47240 * 209.99986 * 17 15 13 20 20 H 1.48494 * 109.47377 * 330.00426 * 17 15 13 21 21 C 1.53040 * 109.53707 * 298.51014 * 11 10 9 22 22 C 1.46935 * 120.62795 * 179.97438 * 8 6 5 23 23 C 1.50694 * 109.47307 * 239.99872 * 2 1 3 24 24 N 1.30502 * 125.64996 * 285.17773 * 23 2 1 25 25 C 1.34128 * 109.25609 * 180.29462 * 24 23 2 26 26 C 1.34670 * 108.02237 * 359.72151 * 25 24 23 27 27 N 1.35046 * 125.65115 * 105.00393 * 23 2 1 28 28 C 1.46499 * 126.39639 * 359.97025 * 27 23 2 29 29 H 1.09002 * 109.46975 * 60.00349 * 1 2 3 30 30 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47508 * 300.00355 * 1 2 3 32 32 H 1.09001 * 109.47135 * 299.99149 * 5 4 2 33 33 H 1.09000 * 109.47795 * 59.99748 * 5 4 2 34 34 H 1.09000 * 109.58243 * 246.19932 * 9 8 6 35 35 H 1.08988 * 109.58915 * 6.62508 * 9 8 6 36 36 H 1.08990 * 109.63450 * 294.86284 * 10 9 8 37 37 H 1.09002 * 109.45663 * 174.73720 * 10 9 8 38 38 H 1.09007 * 109.45103 * 58.51838 * 11 10 9 39 39 H 0.97005 * 120.00003 * 95.06877 * 12 11 10 40 40 H 0.96998 * 119.99877 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.49632 * 301.41116 * 21 11 10 42 42 H 1.09007 * 109.52389 * 181.33451 * 21 11 10 43 43 H 1.09003 * 109.58614 * 353.37646 * 22 8 6 44 44 H 1.09000 * 109.58593 * 113.65765 * 22 8 6 45 45 H 1.07999 * 125.99228 * 179.72379 * 25 24 23 46 46 H 1.07997 * 126.59514 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47391 * 269.71816 * 28 27 23 48 48 H 1.09001 * 109.46813 * 149.71873 * 28 27 23 49 49 H 1.09004 * 109.47041 * 29.72000 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7001 -0.6283 3.4615 7 8 2.8732 -1.8225 3.3401 8 7 2.9550 -0.0267 4.6403 9 6 2.7560 1.4201 4.8008 10 6 1.8415 1.6559 6.0125 11 6 2.4410 0.9643 7.2391 12 7 1.5913 1.2164 8.4055 13 6 1.7527 2.3640 9.1351 14 1 2.5067 3.0831 8.8508 15 6 0.9471 2.6030 10.2400 16 7 0.0286 1.7265 10.5868 17 14 1.1678 4.1681 11.2355 18 1 0.2964 5.2348 10.6805 19 1 0.7961 3.9116 12.6502 20 1 2.5862 4.6023 11.1674 21 6 2.5262 -0.5427 6.9864 22 6 3.4426 -0.8044 5.7876 23 6 2.0323 -0.7104 -1.2304 24 7 2.0241 -2.0016 -1.4198 25 6 2.5524 -2.2757 -2.6218 26 6 2.8956 -1.1097 -3.2018 27 7 2.5626 -0.1162 -2.3210 28 6 2.7516 1.3227 -2.5215 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.9319 0.9513 2.0451 33 1 1.2537 0.6547 2.5589 34 1 3.7181 1.9051 4.9658 35 1 2.2886 1.8264 3.9040 36 1 0.8525 1.2450 5.8103 37 1 1.7590 2.7260 6.2024 38 1 3.4401 1.3582 7.4257 39 1 0.9143 0.5704 8.6611 40 1 -0.5340 1.8934 11.3591 41 1 1.5306 -0.9329 6.7751 42 1 2.9312 -1.0377 7.8690 43 1 3.4283 -1.8663 5.5419 44 1 4.4605 -0.4991 6.0299 45 1 2.6802 -3.2590 -3.0496 46 1 3.3473 -0.9829 -4.1745 47 1 1.8648 1.7431 -2.9956 48 1 3.6189 1.4896 -3.1604 49 1 2.9120 1.8058 -1.5577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203527102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:42 Heat of formation + Delta-G solvation = -20.848312 kcal Electronic energy + Delta-G solvation = -29011.767148 eV Core-core repulsion = 24974.816547 eV Total energy + Delta-G solvation = -4036.950601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.05120 -41.26773 -39.29699 -38.39462 -36.13301 -34.94904 -33.91268 -33.29803 -32.19342 -31.04409 -29.63374 -28.87782 -27.79833 -26.39134 -24.61843 -24.40088 -23.87618 -22.29789 -21.70904 -20.83508 -20.16282 -19.04930 -18.56526 -18.04203 -17.57584 -17.11385 -16.86088 -16.66913 -16.46476 -15.78258 -15.57459 -15.43803 -15.34896 -15.07602 -14.85328 -14.57516 -14.42029 -14.18833 -13.99973 -13.73395 -13.58327 -13.45459 -13.30878 -13.20378 -13.09701 -12.97204 -12.81751 -12.61439 -12.18460 -12.13849 -12.03096 -11.98860 -11.67843 -11.29028 -10.95602 -10.91915 -10.80411 -10.72222 -10.53680 -9.69118 -9.38406 -8.98570 -7.90906 -5.19733 0.99618 1.49882 1.51305 1.53210 1.59457 1.60058 1.93980 2.17968 2.58755 2.87490 3.35519 3.42398 3.49958 3.79995 3.83220 3.92615 3.95855 4.07076 4.07803 4.11086 4.15437 4.20235 4.28964 4.37429 4.43058 4.45106 4.55130 4.64186 4.65909 4.71129 4.74830 4.79519 4.82723 4.84702 4.88339 5.04269 5.09615 5.21448 5.30585 5.32780 5.51720 5.56335 5.64176 5.82048 5.99540 6.24922 6.30418 6.40880 7.14355 7.20819 7.36373 8.12705 8.35290 9.32827 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.001995 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.778527 B =14033.921507 C =14524.174703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.115 0.885 4 O -0.377 6.377 5 C 0.044 3.956 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.604 5.604 9 C 0.113 3.887 10 C -0.142 4.142 11 C 0.172 3.828 12 N -0.740 5.740 13 C -0.232 4.232 14 H 0.082 0.918 15 C -0.082 4.082 16 N -0.973 5.973 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.302 1.302 20 H -0.267 1.267 21 C -0.128 4.128 22 C 0.124 3.876 23 C 0.181 3.819 24 N -0.519 5.519 25 C -0.069 4.069 26 C -0.038 4.038 27 N -0.453 5.453 28 C 0.057 3.943 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.369 0.631 40 H 0.248 0.752 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.177 0.823 46 H 0.215 0.785 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 4.903 -30.951 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.115 3.885 3 H 0.132 0.868 4 O -0.295 6.295 5 C -0.035 4.035 6 C 0.297 3.703 7 O -0.457 6.457 8 N -0.339 5.339 9 C -0.009 4.009 10 C -0.183 4.183 11 C 0.064 3.936 12 N -0.379 5.379 13 C -0.364 4.364 14 H 0.100 0.900 15 C -0.273 4.273 16 N -0.624 5.624 17 Si 0.801 3.199 18 H -0.214 1.214 19 H -0.229 1.229 20 H -0.192 1.192 21 C -0.167 4.167 22 C 0.001 3.999 23 C -0.082 4.082 24 N -0.239 5.239 25 C -0.217 4.217 26 C -0.172 4.172 27 N -0.136 5.136 28 C -0.084 4.084 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.200 0.800 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.195 0.805 46 H 0.232 0.768 47 H 0.115 0.885 48 H 0.128 0.872 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.413 3.847 -30.409 31.535 hybrid contribution -0.340 0.617 0.643 0.954 sum 7.074 4.465 -29.766 30.919 Atomic orbital electron populations 1.22210 0.93134 1.02736 1.04044 1.20325 0.94461 0.94366 0.79396 0.86762 1.88175 1.86891 1.34915 1.19540 1.22519 1.03543 0.92449 0.84960 1.20868 0.77160 0.87800 0.84455 1.90711 1.53767 1.17469 1.83751 1.48191 1.65304 1.10117 1.10257 1.22113 1.01051 0.78301 0.99482 1.22535 0.98787 1.01559 0.95371 1.20442 0.93770 0.92894 0.86540 1.42696 1.41646 1.22767 1.30761 1.19648 1.13682 0.97453 1.05571 0.90000 1.25578 0.99237 1.01717 1.00800 1.69833 1.25408 1.37788 1.29411 0.85156 0.78004 0.79388 0.77318 1.21422 1.22920 1.19158 1.22052 0.99611 0.97206 0.97820 1.21480 0.97531 0.96824 0.84098 1.23079 1.04070 0.89000 0.92066 1.70195 1.20711 1.14225 1.18774 1.22774 1.06102 1.00049 0.92790 1.23281 1.07583 0.87236 0.99053 1.45539 1.44913 1.09479 1.13676 1.22510 1.05412 0.74885 1.05592 0.89634 0.93731 0.89708 0.86361 0.87264 0.88884 0.86731 0.93528 0.90994 0.92981 0.79983 0.94285 0.93444 0.91155 0.90590 0.89442 0.80533 0.76803 0.88467 0.87229 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.51 71.98 0.68 -1.92 16 2 C 0.17 3.07 3.09 29.85 0.09 3.17 16 3 H 0.11 0.95 6.38 -2.39 -0.02 0.93 16 4 O -0.38 -9.89 9.50 -129.94 -1.23 -11.13 16 5 C 0.04 0.84 4.57 71.24 0.33 1.17 16 6 C 0.51 14.58 7.78 87.66 0.68 15.26 16 7 O -0.58 -22.95 15.91 16.01 0.25 -22.69 16 8 N -0.60 -15.36 2.97 -818.15 -2.43 -17.79 16 9 C 0.11 2.20 6.37 86.51 0.55 2.75 16 10 C -0.14 -4.14 5.67 30.82 0.17 -3.96 16 11 C 0.17 6.18 2.73 45.02 0.12 6.31 16 12 N -0.74 -35.78 5.12 -322.81 -1.65 -37.43 16 13 C -0.23 -12.23 9.93 84.03 0.83 -11.40 16 14 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 15 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 16 N -0.97 -59.17 13.06 21.65 0.28 -58.88 16 17 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 C -0.13 -4.20 5.55 30.66 0.17 -4.03 16 22 C 0.12 3.47 6.43 86.34 0.55 4.03 16 23 C 0.18 3.98 6.79 138.13 0.94 4.92 16 24 N -0.52 -15.28 11.25 -188.13 -2.12 -17.39 16 25 C -0.07 -1.53 11.87 83.52 0.99 -0.54 16 26 C -0.04 -0.54 11.58 83.09 0.96 0.42 16 27 N -0.45 -6.37 3.15 -537.61 -1.69 -8.07 16 28 C 0.06 0.17 10.94 127.77 1.40 1.56 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.06 7.87 -2.39 -0.02 1.04 16 32 H 0.12 1.26 7.87 -2.39 -0.02 1.24 16 33 H 0.11 1.50 7.43 -2.39 -0.02 1.48 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.37 5.93 -2.39 -0.01 1.36 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 38 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 39 H 0.37 19.81 7.80 -92.70 -0.72 19.09 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.08 2.38 7.01 -2.39 -0.02 2.36 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 45 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 46 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 47 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.10 0.04 6.90 -2.38 -0.02 0.02 16 Total: -1.00 -87.47 399.08 2.61 -84.86 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.23 Total: 28.01 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 8.95 Total: 13.63 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -7.61 Total: -139.57 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.98 Total: -33.82 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -87.47 2.61 -84.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203527102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.013 kcal (2) G-P(sol) polarization free energy of solvation -87.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds