Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99953 * 2 1 4 4 C 1.53000 * 109.47082 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47273 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.46936 * 180.02562 * 5 4 3 7 7 C 1.34256 * 125.75444 * 125.27151 * 6 5 4 8 8 C 1.38040 * 107.41884 * 180.14225 * 7 6 5 9 9 C 1.47427 * 126.41502 * 179.87098 * 8 7 6 10 10 O 1.21595 * 120.00342 * 359.70698 * 9 8 7 11 11 N 1.34784 * 119.99894 * 179.71177 * 9 8 7 12 12 C 1.46501 * 120.00102 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.63742 * 31.85768 * 12 11 9 14 14 C 1.54325 * 110.86922 * 268.61099 * 12 11 9 15 15 N 1.47021 * 107.26760 * 219.37096 * 14 12 11 16 16 C 1.36940 * 125.65018 * 178.89152 * 15 14 12 17 17 H 1.07995 * 120.00102 * 174.88236 * 16 15 14 18 18 C 1.38812 * 119.99879 * 354.89215 * 16 15 14 19 19 N 1.31622 * 120.00058 * 7.05524 * 18 16 15 20 20 Si 1.86794 * 120.00146 * 187.06272 * 18 16 15 21 21 H 1.48504 * 109.47520 * 94.97990 * 20 18 16 22 22 H 1.48499 * 109.47224 * 214.98131 * 20 18 16 23 23 H 1.48503 * 109.47273 * 334.98313 * 20 18 16 24 24 C 1.47428 * 108.70385 * 358.94088 * 15 14 12 25 25 C 1.54906 * 104.83385 * 24.12872 * 24 15 14 26 26 H 1.09005 * 111.03585 * 81.07776 * 25 24 15 27 27 C 1.52994 * 111.00944 * 204.91698 * 25 24 15 28 28 C 1.41289 * 107.16852 * 359.60390 * 8 7 6 29 29 N 1.30449 * 108.02258 * 0.24277 * 28 8 7 30 30 H 1.08990 * 109.47522 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46985 * 299.99866 * 1 2 3 32 32 H 1.09003 * 109.47257 * 59.99329 * 1 2 3 33 33 H 1.09003 * 109.46720 * 60.00463 * 3 2 1 34 34 H 1.08995 * 109.47500 * 300.00105 * 3 2 1 35 35 H 1.09003 * 109.46902 * 60.00171 * 4 3 2 36 36 H 1.09004 * 109.47148 * 300.00733 * 4 3 2 37 37 H 1.08996 * 109.47485 * 60.00362 * 5 4 3 38 38 H 1.08999 * 109.46696 * 300.00169 * 5 4 3 39 39 H 1.08009 * 126.29268 * 359.97438 * 7 6 5 40 40 H 0.97002 * 119.99641 * 359.97438 * 11 9 8 41 41 H 1.08999 * 109.88307 * 338.78248 * 14 12 11 42 42 H 1.08997 * 109.88384 * 99.95829 * 14 12 11 43 43 H 0.96998 * 119.99925 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36592 * 265.29042 * 24 15 14 45 45 H 1.09004 * 110.36608 * 142.96374 * 24 15 14 46 46 H 1.08999 * 109.47385 * 172.19400 * 27 25 24 47 47 H 1.09003 * 109.47010 * 52.18953 * 27 25 24 48 48 H 1.09000 * 109.46909 * 292.19918 * 27 25 24 49 49 H 1.08003 * 125.99066 * 180.20806 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 7 5.6182 2.4666 0.0013 7 6 6.4500 3.0322 -0.8879 8 6 7.7362 2.6759 -0.5354 9 6 8.9750 3.0677 -1.2321 10 8 8.9190 3.7691 -2.2238 11 7 10.1696 2.6483 -0.7698 12 6 11.4006 3.0372 -1.4624 13 1 11.2919 4.0229 -1.9148 14 6 11.7880 1.9880 -2.5258 15 7 13.2503 1.8422 -2.4825 16 6 13.9907 0.9897 -3.2573 17 1 15.0693 1.0152 -3.2091 18 6 13.3549 0.0928 -4.1047 19 7 12.0503 0.1541 -4.2688 20 14 14.3505 -1.2012 -5.0122 21 1 14.3370 -2.4687 -4.2386 22 1 13.7556 -1.4333 -6.3529 23 1 15.7504 -0.7304 -5.1665 24 6 13.7876 2.7650 -1.4660 25 6 12.6095 3.0097 -0.4903 26 1 12.5174 2.1920 0.2247 27 6 12.7639 4.3501 0.2309 28 6 7.6435 1.8704 0.6217 29 7 6.3818 1.7528 0.9316 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8892 36 1 3.8567 0.6438 0.8908 37 1 3.8359 3.1231 0.8912 38 1 3.8365 3.1235 -0.8887 39 1 6.1650 3.6500 -1.7268 40 1 10.2142 2.0890 0.0214 41 1 11.3135 1.0341 -2.2955 42 1 11.4787 2.3296 -3.5135 43 1 11.6060 -0.4728 -4.8607 44 1 14.0968 3.7017 -1.9296 45 1 14.6254 2.3056 -0.9414 46 1 11.8604 4.5612 0.8028 47 1 12.9230 5.1409 -0.5022 48 1 13.6185 4.3032 0.9058 49 1 8.4720 1.4290 1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210119019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = 17.706458 kcal Electronic energy + Delta-G solvation = -28544.369260 eV Core-core repulsion = 24509.090520 eV Total energy + Delta-G solvation = -4035.278741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42050 -39.11203 -38.45425 -37.28382 -35.13483 -33.78436 -32.55933 -31.44711 -30.32558 -30.26081 -27.95805 -27.25462 -25.69289 -25.46160 -23.78152 -22.66297 -22.37362 -20.81426 -20.32168 -19.85410 -19.37491 -17.88857 -16.84933 -16.79234 -16.68394 -15.98249 -15.77034 -15.63435 -15.06705 -14.87673 -14.63099 -14.31139 -14.04204 -13.83599 -13.61923 -13.06575 -12.94613 -12.77066 -12.66708 -12.65101 -12.57744 -12.26339 -11.89114 -11.63164 -11.61189 -11.56064 -11.27739 -11.03640 -10.93595 -10.74593 -10.51765 -10.32339 -10.17065 -9.92501 -9.87062 -9.69467 -9.63008 -9.42616 -8.75588 -8.53873 -8.29112 -6.76607 -5.64462 -2.98430 1.53698 2.11528 2.22499 3.24512 3.44500 3.49215 3.52018 3.67486 3.83177 4.16907 4.45856 4.52081 4.55705 4.65392 4.70142 4.78569 4.79997 4.90048 4.90834 4.96470 5.13462 5.22067 5.25908 5.34392 5.37622 5.52472 5.55043 5.60833 5.71873 5.74139 5.84884 6.06222 6.07901 6.23087 6.26857 6.36603 6.43885 6.57094 6.63028 6.69554 6.71464 6.89014 7.03603 7.44602 7.63133 7.69957 7.92333 8.06808 8.32209 8.75585 9.27467 9.88448 10.54175 11.46343 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.002251 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.138560 B =12434.715460 C =14061.490847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.137 3.863 6 N -0.365 5.365 7 C 0.124 3.876 8 C -0.281 4.281 9 C 0.593 3.407 10 O -0.550 6.550 11 N -0.708 5.708 12 C 0.123 3.877 13 H 0.089 0.911 14 C 0.172 3.828 15 N -0.606 5.606 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.916 5.916 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.141 3.859 25 C -0.114 4.114 26 H 0.077 0.923 27 C -0.137 4.137 28 C 0.083 3.917 29 N -0.297 5.297 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.187 0.813 40 H 0.394 0.606 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.021 0.979 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.070 6.409 13.274 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.016 3.984 6 N -0.145 5.145 7 C -0.026 4.026 8 C -0.296 4.296 9 C 0.379 3.621 10 O -0.429 6.429 11 N -0.357 5.357 12 C 0.018 3.982 13 H 0.107 0.893 14 C 0.046 3.954 15 N -0.333 5.333 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.563 5.563 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.014 3.986 25 C -0.134 4.134 26 H 0.095 0.905 27 C -0.195 4.195 28 C -0.105 4.105 29 N -0.117 5.117 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.204 0.796 40 H 0.228 0.772 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.024 6.091 13.199 25.560 hybrid contribution 0.800 -0.517 -0.769 1.224 sum -20.224 5.574 12.430 24.385 Atomic orbital electron populations 1.22766 0.80650 1.03042 1.00039 1.87902 1.19975 1.27560 1.95427 1.22381 0.93148 0.85189 1.00508 1.21762 0.93380 0.96508 1.05570 1.21606 0.74215 0.98202 1.04397 1.48402 1.06568 1.38353 1.21131 1.22966 0.89419 0.96029 0.94231 1.20389 0.93947 1.12333 1.02963 1.17156 0.82330 0.79428 0.83146 1.90765 1.87118 1.39025 1.25988 1.45667 1.05711 1.53121 1.31162 1.22458 0.81477 1.00341 0.93937 0.89332 1.21489 0.84106 0.95004 0.94798 1.44418 1.02396 1.44654 1.41801 1.19047 0.89894 1.10252 1.16666 0.90344 1.24848 0.95871 0.99560 1.00135 1.70000 1.07260 1.38366 1.40656 0.86133 0.78952 0.82017 0.78876 1.21688 1.21829 1.20651 1.21590 0.94012 0.93522 0.89443 1.22617 0.96510 0.97354 0.96931 0.90468 1.21693 1.00890 0.96869 1.00010 1.24091 0.94765 0.96510 0.95143 1.77120 1.03572 1.17452 1.13531 0.89425 0.93959 0.93929 0.92883 0.92911 0.90122 0.89244 0.89203 0.88076 0.79565 0.77237 0.92971 0.93674 0.93777 0.96121 0.94003 0.93080 0.92647 0.92883 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.42 10.70 -35.23 -0.38 -3.80 16 3 C 0.07 0.41 5.94 37.16 0.22 0.63 16 4 C -0.13 -1.02 5.76 -26.73 -0.15 -1.18 16 5 C 0.14 0.91 6.49 -4.04 -0.03 0.88 16 6 N -0.37 -3.90 3.65 -60.81 -0.22 -4.13 16 7 C 0.12 1.49 11.25 -16.56 -0.19 1.30 16 8 C -0.28 -4.00 6.13 -105.07 -0.64 -4.64 16 9 C 0.59 10.42 7.81 -12.52 -0.10 10.32 16 10 O -0.55 -11.74 16.54 5.28 0.09 -11.66 16 11 N -0.71 -11.76 5.10 -53.10 -0.27 -12.03 16 12 C 0.12 2.39 2.78 -66.09 -0.18 2.21 16 13 H 0.09 1.84 7.44 -51.93 -0.39 1.45 16 14 C 0.17 4.33 5.14 -3.06 -0.02 4.32 16 15 N -0.61 -15.72 3.39 -170.08 -0.58 -16.30 16 16 C -0.23 -6.53 10.27 -15.06 -0.15 -6.69 16 17 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 18 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 19 N -0.92 -27.82 10.36 55.49 0.57 -27.25 16 20 Si 0.91 22.56 29.56 -169.99 -5.02 17.53 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 25 C -0.11 -1.93 3.27 -88.48 -0.29 -2.22 16 26 H 0.08 1.24 8.01 -51.93 -0.42 0.83 16 27 C -0.14 -1.85 9.31 37.15 0.35 -1.51 16 28 C 0.08 1.02 11.50 -16.98 -0.20 0.83 16 29 N -0.30 -3.74 12.33 30.86 0.38 -3.36 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.19 1.84 8.06 -52.48 -0.42 1.41 16 40 H 0.39 5.37 7.52 -40.82 -0.31 5.06 16 41 H 0.05 1.45 7.19 -51.93 -0.37 1.07 16 42 H 0.05 1.32 7.61 -51.93 -0.40 0.93 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 44 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.76 8.07 -51.93 -0.42 0.35 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.19 1.79 7.50 -52.48 -0.39 1.39 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -36.83 404.95 -7.85 -44.68 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.14 Total: 2.09 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.38 Total: 8.10 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.11 Total: -63.06 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.29 Total: -15.46 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.83 -7.85 -44.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210119019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.389 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds