Wall clock time and date at job start Tue Mar 31 2020 19:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99953 * 2 1 4 4 C 1.53000 * 109.47082 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47273 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.46936 * 180.02562 * 5 4 3 7 7 C 1.34256 * 125.75444 * 125.27151 * 6 5 4 8 8 C 1.38040 * 107.41884 * 180.14225 * 7 6 5 9 9 C 1.47427 * 126.41502 * 179.87098 * 8 7 6 10 10 O 1.21595 * 120.00342 * 359.70698 * 9 8 7 11 11 N 1.34784 * 119.99894 * 179.71177 * 9 8 7 12 12 C 1.46501 * 120.00102 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.63742 * 31.85768 * 12 11 9 14 14 C 1.54325 * 110.86922 * 268.61099 * 12 11 9 15 15 N 1.47021 * 107.26760 * 219.37096 * 14 12 11 16 16 C 1.36940 * 125.65018 * 178.89152 * 15 14 12 17 17 H 1.07995 * 120.00102 * 174.88236 * 16 15 14 18 18 C 1.38812 * 119.99879 * 354.89215 * 16 15 14 19 19 N 1.31622 * 120.00058 * 7.05524 * 18 16 15 20 20 Si 1.86794 * 120.00146 * 187.06272 * 18 16 15 21 21 H 1.48504 * 109.47520 * 94.97990 * 20 18 16 22 22 H 1.48499 * 109.47224 * 214.98131 * 20 18 16 23 23 H 1.48503 * 109.47273 * 334.98313 * 20 18 16 24 24 C 1.47428 * 108.70385 * 358.94088 * 15 14 12 25 25 C 1.54906 * 104.83385 * 24.12872 * 24 15 14 26 26 H 1.09005 * 111.03585 * 81.07776 * 25 24 15 27 27 C 1.52994 * 111.00944 * 204.91698 * 25 24 15 28 28 C 1.41289 * 107.16852 * 359.60390 * 8 7 6 29 29 N 1.30449 * 108.02258 * 0.24277 * 28 8 7 30 30 H 1.08990 * 109.47522 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46985 * 299.99866 * 1 2 3 32 32 H 1.09003 * 109.47257 * 59.99329 * 1 2 3 33 33 H 1.09003 * 109.46720 * 60.00463 * 3 2 1 34 34 H 1.08995 * 109.47500 * 300.00105 * 3 2 1 35 35 H 1.09003 * 109.46902 * 60.00171 * 4 3 2 36 36 H 1.09004 * 109.47148 * 300.00733 * 4 3 2 37 37 H 1.08996 * 109.47485 * 60.00362 * 5 4 3 38 38 H 1.08999 * 109.46696 * 300.00169 * 5 4 3 39 39 H 1.08009 * 126.29268 * 359.97438 * 7 6 5 40 40 H 0.97002 * 119.99641 * 359.97438 * 11 9 8 41 41 H 1.08999 * 109.88307 * 338.78248 * 14 12 11 42 42 H 1.08997 * 109.88384 * 99.95829 * 14 12 11 43 43 H 0.96998 * 119.99925 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36592 * 265.29042 * 24 15 14 45 45 H 1.09004 * 110.36608 * 142.96374 * 24 15 14 46 46 H 1.08999 * 109.47385 * 172.19400 * 27 25 24 47 47 H 1.09003 * 109.47010 * 52.18953 * 27 25 24 48 48 H 1.09000 * 109.46909 * 292.19918 * 27 25 24 49 49 H 1.08003 * 125.99066 * 180.20806 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 7 5.6182 2.4666 0.0013 7 6 6.4500 3.0322 -0.8879 8 6 7.7362 2.6759 -0.5354 9 6 8.9750 3.0677 -1.2321 10 8 8.9190 3.7691 -2.2238 11 7 10.1696 2.6483 -0.7698 12 6 11.4006 3.0372 -1.4624 13 1 11.2919 4.0229 -1.9148 14 6 11.7880 1.9880 -2.5258 15 7 13.2503 1.8422 -2.4825 16 6 13.9907 0.9897 -3.2573 17 1 15.0693 1.0152 -3.2091 18 6 13.3549 0.0928 -4.1047 19 7 12.0503 0.1541 -4.2688 20 14 14.3505 -1.2012 -5.0122 21 1 14.3370 -2.4687 -4.2386 22 1 13.7556 -1.4333 -6.3529 23 1 15.7504 -0.7304 -5.1665 24 6 13.7876 2.7650 -1.4660 25 6 12.6095 3.0097 -0.4903 26 1 12.5174 2.1920 0.2247 27 6 12.7639 4.3501 0.2309 28 6 7.6435 1.8704 0.6217 29 7 6.3818 1.7528 0.9316 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8892 36 1 3.8567 0.6438 0.8908 37 1 3.8359 3.1231 0.8912 38 1 3.8365 3.1235 -0.8887 39 1 6.1650 3.6500 -1.7268 40 1 10.2142 2.0890 0.0214 41 1 11.3135 1.0341 -2.2955 42 1 11.4787 2.3296 -3.5135 43 1 11.6060 -0.4728 -4.8607 44 1 14.0968 3.7017 -1.9296 45 1 14.6254 2.3056 -0.9414 46 1 11.8604 4.5612 0.8028 47 1 12.9230 5.1409 -0.5022 48 1 13.6185 4.3032 0.9058 49 1 8.4720 1.4290 1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210119019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:02 Heat of formation + Delta-G solvation = -9.090397 kcal Electronic energy + Delta-G solvation = -28545.531259 eV Core-core repulsion = 24509.090520 eV Total energy + Delta-G solvation = -4036.440740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37956 -40.58657 -39.03006 -38.87275 -35.84886 -35.53825 -34.21368 -32.27705 -32.12305 -31.32709 -29.45252 -28.01280 -27.32760 -26.25713 -25.34681 -23.79068 -23.22134 -21.96308 -21.73979 -21.34674 -20.67887 -18.92459 -18.83984 -17.46328 -17.31950 -17.22424 -16.94071 -16.76072 -16.41898 -15.88008 -15.65916 -15.59553 -15.29730 -15.18414 -14.84117 -14.66784 -14.27753 -14.07674 -13.78627 -13.69890 -13.31264 -13.29497 -13.24469 -13.00032 -12.84025 -12.75358 -12.56846 -12.31321 -12.15096 -12.09530 -12.01532 -11.84919 -11.82262 -11.61361 -11.40632 -10.86237 -10.70694 -10.64986 -10.58148 -10.02674 -9.60800 -8.89584 -7.83772 -5.20506 0.54082 1.17585 1.34276 1.45156 1.47617 1.56759 2.31964 2.51715 2.54755 2.75671 3.33818 3.47003 3.66552 3.79529 3.79932 3.86386 4.00058 4.09224 4.11559 4.15380 4.16485 4.23446 4.35408 4.43787 4.47939 4.54021 4.54386 4.55620 4.65760 4.77196 4.78906 4.85528 4.92458 4.95939 5.08510 5.10845 5.12136 5.29195 5.35869 5.41058 5.47002 5.54503 5.67349 5.84880 5.85524 6.18939 6.21515 6.49810 6.73561 7.08400 7.40138 7.77921 8.42410 9.25709 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.002251 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.138560 B =12434.715460 C =14061.490847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.065 3.935 4 C -0.127 4.127 5 C 0.130 3.870 6 N -0.357 5.357 7 C 0.134 3.866 8 C -0.312 4.312 9 C 0.591 3.409 10 O -0.597 6.597 11 N -0.698 5.698 12 C 0.139 3.861 13 H 0.075 0.925 14 C 0.187 3.813 15 N -0.627 5.627 16 C -0.241 4.241 17 H 0.088 0.912 18 C -0.071 4.071 19 N -0.951 5.951 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.299 1.299 23 H -0.264 1.264 24 C 0.132 3.868 25 C -0.094 4.094 26 H 0.092 0.908 27 C -0.128 4.128 28 C 0.087 3.913 29 N -0.315 5.315 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.207 0.793 40 H 0.411 0.589 41 H 0.019 0.981 42 H -0.013 1.013 43 H 0.244 0.756 44 H 0.025 0.975 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.078 0.922 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 7.202 15.410 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.012 4.012 4 C -0.165 4.165 5 C 0.010 3.990 6 N -0.135 5.135 7 C -0.019 4.019 8 C -0.327 4.327 9 C 0.380 3.620 10 O -0.479 6.479 11 N -0.348 5.348 12 C 0.032 3.968 13 H 0.093 0.907 14 C 0.060 3.940 15 N -0.354 5.354 16 C -0.370 4.370 17 H 0.106 0.894 18 C -0.264 4.264 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.226 1.226 23 H -0.188 1.188 24 C 0.007 3.993 25 C -0.114 4.114 26 H 0.111 0.889 27 C -0.186 4.186 28 C -0.101 4.101 29 N -0.134 5.134 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.223 0.777 40 H 0.247 0.753 41 H 0.037 0.963 42 H 0.005 0.995 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -21.458 6.885 15.414 27.303 hybrid contribution 0.860 -0.740 -1.449 1.840 sum -20.598 6.145 13.966 25.633 Atomic orbital electron populations 1.22920 0.79162 1.03715 1.01172 1.87850 1.21776 1.29160 1.95706 1.22461 0.91756 0.84670 1.02277 1.21653 0.94805 0.96663 1.03405 1.22024 0.71732 0.98057 1.07139 1.48730 1.07877 1.36927 1.19961 1.23282 0.89036 0.95237 0.94305 1.20196 0.93228 1.14833 1.04436 1.17653 0.83338 0.78441 0.82532 1.90733 1.87789 1.41244 1.28114 1.45488 1.04743 1.53260 1.31301 1.22019 0.83818 0.97383 0.93533 0.90729 1.21133 0.84087 0.94843 0.93910 1.44739 1.02741 1.45131 1.42791 1.19517 0.90691 1.10258 1.16529 0.89387 1.25755 0.96947 1.01975 1.01696 1.70264 1.09069 1.39062 1.41606 0.85033 0.78091 0.79141 0.76931 1.21204 1.22626 1.18843 1.21866 0.95830 0.92483 0.89107 1.22542 0.92725 1.00241 0.95871 0.88928 1.21643 1.02850 0.94065 1.00014 1.24424 0.95438 0.95748 0.94461 1.77099 1.03743 1.18147 1.14447 0.89153 0.92705 0.92848 0.91061 0.91044 0.92240 0.91441 0.86979 0.84851 0.77681 0.75274 0.96287 0.99489 0.94706 0.95709 0.92589 0.91430 0.93069 0.90351 0.77155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.10 10.70 -148.98 -1.59 -8.70 16 3 C 0.07 0.69 5.94 71.98 0.43 1.12 16 4 C -0.13 -1.80 5.76 30.59 0.18 -1.63 16 5 C 0.13 1.40 6.49 86.38 0.56 1.96 16 6 N -0.36 -7.04 3.65 -346.30 -1.26 -8.31 16 7 C 0.13 3.06 11.25 84.28 0.95 4.01 16 8 C -0.31 -8.73 6.13 -20.15 -0.12 -8.86 16 9 C 0.59 21.16 7.81 86.66 0.68 21.84 16 10 O -0.60 -26.47 16.54 -4.02 -0.07 -26.53 16 11 N -0.70 -23.28 5.10 -440.17 -2.25 -25.53 16 12 C 0.14 5.49 2.78 46.18 0.13 5.62 16 13 H 0.07 3.19 7.44 -2.39 -0.02 3.17 16 14 C 0.19 9.92 5.14 86.73 0.45 10.36 16 15 N -0.63 -33.28 3.39 -692.00 -2.35 -35.63 16 16 C -0.24 -13.89 10.27 84.03 0.86 -13.02 16 17 H 0.09 4.77 7.84 -2.91 -0.02 4.75 16 18 C -0.07 -4.21 5.48 84.86 0.46 -3.74 16 19 N -0.95 -60.62 10.36 21.65 0.22 -60.39 16 20 Si 0.98 47.33 29.56 68.60 2.03 49.36 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.13 5.31 6.70 86.85 0.58 5.89 16 25 C -0.09 -3.01 3.27 -9.40 -0.03 -3.04 16 26 H 0.09 2.72 8.01 -2.38 -0.02 2.70 16 27 C -0.13 -3.06 9.31 71.98 0.67 -2.39 16 28 C 0.09 2.05 11.50 85.65 0.99 3.04 16 29 N -0.31 -7.52 12.33 -56.27 -0.69 -8.22 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.13 0.62 8.06 -2.39 -0.02 0.60 16 39 H 0.21 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.41 10.79 7.52 -92.71 -0.70 10.09 16 41 H 0.02 1.12 7.19 -2.39 -0.02 1.10 16 42 H -0.01 -0.84 7.61 -2.39 -0.02 -0.85 16 43 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.03 0.99 7.98 -2.39 -0.02 0.97 16 45 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 1.28 8.07 -2.39 -0.02 1.26 16 48 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.21 3.65 7.50 -2.91 -0.02 3.63 16 Total: -1.00 -85.43 404.95 2.30 -83.13 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.24 Total: 18.16 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 8.02 Total: 22.66 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -6.33 Total: -138.07 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.66 Total: -35.23 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -85.43 2.30 -83.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210119019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.036 kcal (2) G-P(sol) polarization free energy of solvation -85.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds