Wall clock time and date at job start Tue Mar 31 2020 19:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 O 1.42899 * 109.47031 * 119.99913 * 2 1 3 5 5 C 1.42905 * 113.99778 * 269.99750 * 4 2 1 6 6 C 1.50699 * 109.46972 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00169 * 180.02562 * 8 6 5 10 10 H 1.09005 * 110.88295 * 31.11716 * 9 8 6 11 11 C 1.54911 * 111.00594 * 267.19513 * 9 8 6 12 12 N 1.47419 * 104.82964 * 204.91674 * 11 9 8 13 13 C 1.36938 * 125.64369 * 204.17141 * 12 11 9 14 14 H 1.08006 * 120.00097 * 179.97438 * 13 12 11 15 15 C 1.38817 * 120.00130 * 359.94575 * 13 12 11 16 16 N 1.31613 * 119.99846 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47441 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46818 * 120.00407 * 17 15 13 20 20 H 1.48505 * 109.47133 * 239.99860 * 17 15 13 21 21 C 1.47018 * 108.70829 * 24.12410 * 12 11 9 22 22 C 1.54325 * 107.27191 * 358.94378 * 21 12 11 23 23 H 1.09000 * 110.72119 * 96.16395 * 22 21 12 24 24 C 1.52991 * 110.72190 * 219.44347 * 22 21 12 25 25 C 1.50701 * 109.47303 * 239.99682 * 2 1 3 26 26 N 1.30499 * 125.64915 * 285.02800 * 25 2 1 27 27 C 1.34134 * 109.25426 * 179.97438 * 26 25 2 28 28 C 1.34667 * 108.01793 * 359.97438 * 27 26 25 29 29 N 1.35046 * 125.64995 * 104.71451 * 25 2 1 30 30 C 1.46501 * 126.39649 * 0.02562 * 29 25 2 31 31 H 1.09001 * 109.47120 * 60.00519 * 1 2 3 32 32 H 1.09003 * 109.47460 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47597 * 300.00067 * 1 2 3 34 34 H 1.09000 * 109.47187 * 300.00233 * 5 4 2 35 35 H 1.09001 * 109.46558 * 60.00281 * 5 4 2 36 36 H 0.96996 * 119.99844 * 359.97438 * 8 6 5 37 37 H 1.08997 * 110.36023 * 323.75457 * 11 9 8 38 38 H 1.08998 * 110.36646 * 86.07545 * 11 9 8 39 39 H 0.97006 * 120.00160 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.88558 * 239.51973 * 21 12 11 41 41 H 1.09001 * 109.87793 * 118.35615 * 21 12 11 42 42 H 1.09003 * 109.47601 * 173.52108 * 24 22 21 43 43 H 1.08997 * 109.47172 * 293.51958 * 24 22 21 44 44 H 1.09001 * 109.47487 * 53.51894 * 24 22 21 45 45 H 1.07997 * 125.98356 * 179.97438 * 27 26 25 46 46 H 1.08005 * 126.58606 * 180.02562 * 28 27 26 47 47 H 1.08996 * 109.47102 * 89.99676 * 30 29 25 48 48 H 1.08994 * 109.47265 * 209.99532 * 30 29 25 49 49 H 1.09008 * 109.47039 * 329.99904 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7014 -0.6281 3.4610 7 8 2.8760 -1.8220 3.3392 8 7 2.9557 -0.0266 4.6401 9 6 3.4436 -0.8150 5.7744 10 1 4.0468 -1.6560 5.4322 11 6 2.2689 -1.2976 6.6614 12 7 2.8632 -1.5054 7.9944 13 6 2.3748 -2.3392 8.9647 14 1 2.8857 -2.4221 9.9127 15 6 1.2229 -3.0774 8.7302 16 7 0.6004 -2.9764 7.5750 17 14 0.5573 -4.2154 10.0536 18 1 1.4340 -4.1491 11.2503 19 1 -0.8176 -3.7932 10.4237 20 1 0.5257 -5.6080 9.5390 21 6 4.0675 -0.6700 8.1091 22 6 4.2395 0.0727 6.7673 23 1 3.8083 1.0723 6.8218 24 6 5.7156 0.1391 6.3707 25 6 2.0323 -0.7105 -1.2304 26 7 2.0267 -2.0018 -1.4186 27 6 2.5477 -2.2754 -2.6240 28 6 2.8886 -1.1093 -3.2049 29 7 2.5575 -0.1159 -2.3233 30 6 2.7412 1.3233 -2.5263 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 2.9319 0.9514 2.0449 35 1 1.2537 0.6547 2.5588 36 1 2.8164 0.9283 4.7374 37 1 1.4906 -0.5359 6.7075 38 1 1.8628 -2.2333 6.2770 39 1 -0.2044 -3.4925 7.4109 40 1 4.9377 -1.2982 8.2994 41 1 3.9435 0.0500 8.9180 42 1 5.8044 0.5630 5.3704 43 1 6.2547 0.7665 7.0804 44 1 6.1395 -0.8651 6.3786 45 1 2.6719 -3.2586 -3.0533 46 1 3.3340 -0.9821 -4.1805 47 1 3.7239 1.6194 -2.1593 48 1 2.6660 1.5529 -3.5891 49 1 1.9704 1.8684 -1.9813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210675187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:22 Heat of formation + Delta-G solvation = 18.792336 kcal Electronic energy + Delta-G solvation = -29237.110700 eV Core-core repulsion = 25201.879046 eV Total energy + Delta-G solvation = -4035.231654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.29643 -39.59872 -38.20182 -37.14936 -34.29292 -33.85002 -32.64647 -32.38864 -30.32375 -28.89940 -28.75077 -27.32764 -26.81706 -25.55202 -23.81978 -23.38640 -21.55615 -20.69662 -20.08909 -19.99680 -19.48413 -17.68902 -17.00651 -16.82883 -16.57242 -16.14088 -15.88297 -15.47560 -14.95855 -14.82634 -14.35745 -14.06459 -13.76110 -13.65857 -13.55517 -13.19931 -13.09872 -12.96486 -12.90023 -12.74718 -12.53462 -12.40587 -12.16284 -12.09436 -11.67009 -11.25061 -11.19108 -11.04718 -10.75928 -10.59591 -10.30417 -10.03577 -9.92742 -9.88950 -9.80628 -9.73372 -9.71557 -9.34340 -8.60715 -8.60099 -8.39685 -6.78710 -5.57724 -3.01675 1.73957 2.34628 2.91706 3.01641 3.19027 3.45387 3.50027 3.53541 3.92505 4.16008 4.28211 4.48551 4.55248 4.61962 4.69788 4.85449 4.89662 4.95509 5.03323 5.14882 5.21667 5.23340 5.34317 5.37579 5.47255 5.48722 5.55304 5.58522 5.79122 5.97737 5.99117 6.05888 6.06956 6.18283 6.28354 6.41092 6.51940 6.56302 6.69318 6.81146 6.84394 6.95004 7.02121 7.51415 7.67697 7.88844 7.98898 8.01150 8.43585 8.67060 9.26972 9.88281 10.51330 11.45117 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.002406 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.302301 B =11635.092866 C =12675.668411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.071 0.929 4 O -0.332 6.332 5 C 0.042 3.958 6 C 0.510 3.490 7 O -0.507 6.507 8 N -0.714 5.714 9 C 0.121 3.879 10 H 0.093 0.907 11 C 0.148 3.852 12 N -0.603 5.603 13 C -0.227 4.227 14 H 0.079 0.921 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.141 3.859 22 C -0.111 4.111 23 H 0.073 0.927 24 C -0.137 4.137 25 C 0.204 3.796 26 N -0.455 5.455 27 C -0.028 4.028 28 C -0.058 4.058 29 N -0.460 5.460 30 C 0.068 3.932 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.393 0.607 37 H 0.013 0.987 38 H 0.112 0.888 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.171 0.829 46 H 0.176 0.824 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 15.987 -21.501 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.116 3.884 3 H 0.089 0.911 4 O -0.249 6.249 5 C -0.038 4.038 6 C 0.294 3.706 7 O -0.380 6.380 8 N -0.366 5.366 9 C 0.016 3.984 10 H 0.111 0.889 11 C 0.022 3.978 12 N -0.330 5.330 13 C -0.355 4.355 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.564 5.564 17 Si 0.745 3.255 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.015 3.985 22 C -0.131 4.131 23 H 0.091 0.909 24 C -0.195 4.195 25 C -0.059 4.059 26 N -0.173 5.173 27 C -0.176 4.176 28 C -0.191 4.191 29 N -0.144 5.144 30 C -0.075 4.075 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.226 0.774 37 H 0.031 0.969 38 H 0.130 0.870 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.188 0.812 46 H 0.193 0.807 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.664 14.303 -20.999 25.832 hybrid contribution -0.136 0.939 -0.007 0.948 sum 4.528 15.241 -21.006 26.345 Atomic orbital electron populations 1.22252 0.93548 1.04629 1.02234 1.20020 0.94141 0.92862 0.81349 0.91080 1.88256 1.86289 1.32413 1.17899 1.22345 1.01196 0.93040 0.87219 1.19982 0.78772 0.88491 0.83367 1.90791 1.49684 1.14633 1.82907 1.45731 1.68277 1.11549 1.11077 1.22708 0.97870 0.93262 0.84523 0.88901 1.22232 0.90267 1.01907 0.83372 1.44400 1.26488 1.48536 1.13557 1.19099 1.06243 1.16290 0.93865 0.90308 1.24832 0.97886 1.00407 0.97470 1.69810 1.20324 1.44337 1.21971 0.86003 0.78507 0.80520 0.80473 1.20542 1.21800 1.21656 1.21340 0.91008 0.92744 0.93419 1.22430 0.95253 0.98845 0.96550 0.90853 1.21737 0.95517 1.01876 1.00324 1.22840 1.03192 0.89222 0.90617 1.70334 1.18551 1.11820 1.16587 1.22440 1.04272 0.98292 0.92641 1.22698 1.09898 0.88223 0.98269 1.45270 1.46794 1.07557 1.14790 1.22080 1.03461 0.77851 1.04066 0.91756 0.90178 0.91122 0.90773 0.90076 0.77376 0.96896 0.87044 0.93662 0.95490 0.95913 0.93178 0.92923 0.92443 0.81156 0.80725 0.90370 0.89351 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.51 37.16 0.35 -1.30 16 2 C 0.18 1.96 2.99 -27.88 -0.08 1.88 16 3 H 0.07 0.52 6.73 -51.93 -0.35 0.17 16 4 O -0.33 -5.12 9.50 -55.14 -0.52 -5.65 16 5 C 0.04 0.52 6.23 36.01 0.22 0.75 16 6 C 0.51 8.94 7.91 -10.99 -0.09 8.86 16 7 O -0.51 -11.92 16.14 -14.35 -0.23 -12.15 16 8 N -0.71 -11.32 5.20 -51.72 -0.27 -11.59 16 9 C 0.12 2.40 2.87 -65.78 -0.19 2.21 16 10 H 0.09 2.08 7.44 -51.93 -0.39 1.69 16 11 C 0.15 3.74 5.58 -2.53 -0.01 3.73 16 12 N -0.60 -15.86 3.39 -170.08 -0.58 -16.44 16 13 C -0.23 -6.49 10.27 -15.06 -0.15 -6.65 16 14 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 15 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 16 N -0.92 -27.98 10.09 55.49 0.56 -27.42 16 17 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C 0.14 2.95 6.84 -3.07 -0.02 2.93 16 22 C -0.11 -1.87 3.19 -88.79 -0.28 -2.15 16 23 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 24 C -0.14 -1.90 9.16 37.15 0.34 -1.56 16 25 C 0.20 2.60 6.79 -155.41 -1.05 1.54 16 26 N -0.45 -7.16 11.25 -10.81 -0.12 -7.28 16 27 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 28 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 29 N -0.46 -4.26 3.15 -121.28 -0.38 -4.64 16 30 C 0.07 0.29 10.75 59.85 0.64 0.93 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 36 H 0.39 4.64 8.57 -40.82 -0.35 4.29 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.11 3.34 5.87 -51.93 -0.30 3.04 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 45 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.09 0.24 7.33 -51.92 -0.38 -0.14 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -40.16 401.61 -9.36 -49.52 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.02 Total: 2.32 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.83 Total: 9.51 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.79 Total: -67.37 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.76 Total: -17.80 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -40.16 -9.36 -49.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210675187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.316 kcal (2) G-P(sol) polarization free energy of solvation -40.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds