Wall clock time and date at job start Tue Mar 31 2020 19:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 O 1.42899 * 109.47031 * 119.99913 * 2 1 3 5 5 C 1.42905 * 113.99778 * 269.99750 * 4 2 1 6 6 C 1.50699 * 109.46972 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00169 * 180.02562 * 8 6 5 10 10 H 1.09005 * 110.88295 * 31.11716 * 9 8 6 11 11 C 1.54911 * 111.00594 * 267.19513 * 9 8 6 12 12 N 1.47419 * 104.82964 * 204.91674 * 11 9 8 13 13 C 1.36938 * 125.64369 * 204.17141 * 12 11 9 14 14 H 1.08006 * 120.00097 * 179.97438 * 13 12 11 15 15 C 1.38817 * 120.00130 * 359.94575 * 13 12 11 16 16 N 1.31613 * 119.99846 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47441 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46818 * 120.00407 * 17 15 13 20 20 H 1.48505 * 109.47133 * 239.99860 * 17 15 13 21 21 C 1.47018 * 108.70829 * 24.12410 * 12 11 9 22 22 C 1.54325 * 107.27191 * 358.94378 * 21 12 11 23 23 H 1.09000 * 110.72119 * 96.16395 * 22 21 12 24 24 C 1.52991 * 110.72190 * 219.44347 * 22 21 12 25 25 C 1.50701 * 109.47303 * 239.99682 * 2 1 3 26 26 N 1.30499 * 125.64915 * 285.02800 * 25 2 1 27 27 C 1.34134 * 109.25426 * 179.97438 * 26 25 2 28 28 C 1.34667 * 108.01793 * 359.97438 * 27 26 25 29 29 N 1.35046 * 125.64995 * 104.71451 * 25 2 1 30 30 C 1.46501 * 126.39649 * 0.02562 * 29 25 2 31 31 H 1.09001 * 109.47120 * 60.00519 * 1 2 3 32 32 H 1.09003 * 109.47460 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47597 * 300.00067 * 1 2 3 34 34 H 1.09000 * 109.47187 * 300.00233 * 5 4 2 35 35 H 1.09001 * 109.46558 * 60.00281 * 5 4 2 36 36 H 0.96996 * 119.99844 * 359.97438 * 8 6 5 37 37 H 1.08997 * 110.36023 * 323.75457 * 11 9 8 38 38 H 1.08998 * 110.36646 * 86.07545 * 11 9 8 39 39 H 0.97006 * 120.00160 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.88558 * 239.51973 * 21 12 11 41 41 H 1.09001 * 109.87793 * 118.35615 * 21 12 11 42 42 H 1.09003 * 109.47601 * 173.52108 * 24 22 21 43 43 H 1.08997 * 109.47172 * 293.51958 * 24 22 21 44 44 H 1.09001 * 109.47487 * 53.51894 * 24 22 21 45 45 H 1.07997 * 125.98356 * 179.97438 * 27 26 25 46 46 H 1.08005 * 126.58606 * 180.02562 * 28 27 26 47 47 H 1.08996 * 109.47102 * 89.99676 * 30 29 25 48 48 H 1.08994 * 109.47265 * 209.99532 * 30 29 25 49 49 H 1.09008 * 109.47039 * 329.99904 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7014 -0.6281 3.4610 7 8 2.8760 -1.8220 3.3392 8 7 2.9557 -0.0266 4.6401 9 6 3.4436 -0.8150 5.7744 10 1 4.0468 -1.6560 5.4322 11 6 2.2689 -1.2976 6.6614 12 7 2.8632 -1.5054 7.9944 13 6 2.3748 -2.3392 8.9647 14 1 2.8857 -2.4221 9.9127 15 6 1.2229 -3.0774 8.7302 16 7 0.6004 -2.9764 7.5750 17 14 0.5573 -4.2154 10.0536 18 1 1.4340 -4.1491 11.2503 19 1 -0.8176 -3.7932 10.4237 20 1 0.5257 -5.6080 9.5390 21 6 4.0675 -0.6700 8.1091 22 6 4.2395 0.0727 6.7673 23 1 3.8083 1.0723 6.8218 24 6 5.7156 0.1391 6.3707 25 6 2.0323 -0.7105 -1.2304 26 7 2.0267 -2.0018 -1.4186 27 6 2.5477 -2.2754 -2.6240 28 6 2.8886 -1.1093 -3.2049 29 7 2.5575 -0.1159 -2.3233 30 6 2.7412 1.3233 -2.5263 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 2.9319 0.9514 2.0449 35 1 1.2537 0.6547 2.5588 36 1 2.8164 0.9283 4.7374 37 1 1.4906 -0.5359 6.7075 38 1 1.8628 -2.2333 6.2770 39 1 -0.2044 -3.4925 7.4109 40 1 4.9377 -1.2982 8.2994 41 1 3.9435 0.0500 8.9180 42 1 5.8044 0.5630 5.3704 43 1 6.2547 0.7665 7.0804 44 1 6.1395 -0.8651 6.3786 45 1 2.6719 -3.2586 -3.0533 46 1 3.3340 -0.9821 -4.1805 47 1 3.7239 1.6194 -2.1593 48 1 2.6660 1.5529 -3.5891 49 1 1.9704 1.8684 -1.9813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210675187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:21 Heat of formation + Delta-G solvation = -11.137990 kcal Electronic energy + Delta-G solvation = -29238.408576 eV Core-core repulsion = 25201.879046 eV Total energy + Delta-G solvation = -4036.529530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.04904 -41.00877 -39.48782 -38.57077 -35.63477 -34.94836 -34.32597 -33.25643 -32.16761 -30.23622 -29.62102 -28.33723 -27.79125 -27.25932 -25.24722 -24.47473 -22.51841 -22.19260 -21.63302 -21.06351 -20.73989 -18.93119 -18.55433 -17.95578 -17.71079 -17.20366 -16.93323 -16.83701 -16.49171 -15.84512 -15.62953 -15.30647 -15.22695 -14.74540 -14.41312 -14.39254 -14.31141 -14.16598 -13.96749 -13.74495 -13.68232 -13.44072 -13.37461 -13.19880 -13.02779 -12.95450 -12.86786 -12.61514 -12.16255 -12.06881 -11.99048 -11.84863 -11.63721 -11.41493 -10.91358 -10.81579 -10.77911 -10.76397 -10.54542 -9.97451 -9.38047 -8.90655 -7.77883 -5.24676 0.99761 1.43281 1.46134 1.56272 1.60949 1.68239 2.01735 2.21134 2.48371 3.01748 3.31689 3.39875 3.61665 3.68848 3.81325 3.95887 3.97306 4.05163 4.07120 4.10366 4.14294 4.18567 4.36172 4.44529 4.53716 4.55446 4.63115 4.66207 4.67248 4.70844 4.75707 4.83239 4.89734 5.04092 5.09416 5.22109 5.22817 5.29469 5.32354 5.45332 5.50529 5.65286 5.80977 5.82221 6.02613 6.26772 6.28548 6.67284 7.06494 7.22401 7.37476 7.76328 8.38522 9.22618 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.002406 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.302301 B =11635.092866 C =12675.668411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.119 0.881 4 O -0.382 6.382 5 C 0.050 3.950 6 C 0.501 3.499 7 O -0.580 6.580 8 N -0.695 5.695 9 C 0.137 3.863 10 H 0.060 0.940 11 C 0.156 3.844 12 N -0.628 5.628 13 C -0.238 4.238 14 H 0.087 0.913 15 C -0.073 4.073 16 N -0.949 5.949 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.297 1.297 21 C 0.132 3.868 22 C -0.091 4.091 23 H 0.105 0.895 24 C -0.130 4.130 25 C 0.181 3.819 26 N -0.524 5.524 27 C -0.073 4.073 28 C -0.035 4.035 29 N -0.453 5.453 30 C 0.056 3.944 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.419 0.581 37 H -0.003 1.003 38 H 0.055 0.945 39 H 0.244 0.756 40 H 0.027 0.973 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.175 0.825 46 H 0.217 0.783 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 20.432 -22.375 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.114 3.886 3 H 0.137 0.863 4 O -0.299 6.299 5 C -0.029 4.029 6 C 0.288 3.712 7 O -0.459 6.459 8 N -0.349 5.349 9 C 0.030 3.970 10 H 0.078 0.922 11 C 0.029 3.971 12 N -0.355 5.355 13 C -0.367 4.367 14 H 0.105 0.895 15 C -0.265 4.265 16 N -0.599 5.599 17 Si 0.810 3.190 18 H -0.185 1.185 19 H -0.216 1.216 20 H -0.224 1.224 21 C 0.007 3.993 22 C -0.110 4.110 23 H 0.123 0.877 24 C -0.187 4.187 25 C -0.082 4.082 26 N -0.243 5.243 27 C -0.220 4.220 28 C -0.169 4.169 29 N -0.136 5.136 30 C -0.084 4.084 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.256 0.744 37 H 0.015 0.985 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.193 0.807 46 H 0.234 0.766 47 H 0.109 0.891 48 H 0.131 0.869 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.144 18.861 -21.863 29.521 hybrid contribution -0.549 -0.425 0.218 0.728 sum 5.595 18.436 -21.644 28.977 Atomic orbital electron populations 1.22227 0.93231 1.02596 1.04156 1.20344 0.94415 0.94486 0.79328 0.86326 1.88207 1.86921 1.35114 1.19695 1.22451 1.03885 0.92091 0.84481 1.21130 0.77130 0.88099 0.84812 1.90766 1.52768 1.18134 1.84210 1.45483 1.67307 1.12442 1.09667 1.22130 0.95499 0.93934 0.85430 0.92180 1.21879 0.92016 0.98891 0.84321 1.44717 1.28083 1.49177 1.13482 1.19535 1.06165 1.16322 0.94669 0.89535 1.25750 0.98670 1.02437 0.99685 1.70138 1.20432 1.45347 1.23991 0.84951 0.77907 0.77722 0.78409 1.18464 1.21649 1.22399 1.21628 0.88732 0.92637 0.96339 1.22376 0.97200 0.98762 0.92653 0.87733 1.21694 0.92925 1.01786 1.02303 1.23113 1.04035 0.88910 0.92111 1.70211 1.20782 1.14516 1.18808 1.22775 1.06394 1.00133 0.92719 1.23271 1.07393 0.87171 0.99059 1.45548 1.45072 1.09523 1.13459 1.22522 1.04862 0.74741 1.06279 0.89324 0.94191 0.89563 0.85663 0.86837 0.74359 0.98512 0.92643 0.94667 0.95452 0.94561 0.91069 0.90130 0.94084 0.80729 0.76602 0.89103 0.86870 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.51 71.98 0.68 -2.37 16 2 C 0.17 3.55 2.99 29.85 0.09 3.64 16 3 H 0.12 1.18 6.73 -2.39 -0.02 1.17 16 4 O -0.38 -11.67 9.50 -129.94 -1.23 -12.90 16 5 C 0.05 1.12 6.23 71.24 0.44 1.56 16 6 C 0.50 17.61 7.91 87.66 0.69 18.30 16 7 O -0.58 -29.01 16.14 16.00 0.26 -28.75 16 8 N -0.70 -21.29 5.20 -435.94 -2.27 -23.56 16 9 C 0.14 5.47 2.87 46.38 0.13 5.60 16 10 H 0.06 2.83 7.44 -2.38 -0.02 2.81 16 11 C 0.16 8.21 5.58 86.86 0.48 8.69 16 12 N -0.63 -33.80 3.39 -692.01 -2.35 -36.14 16 13 C -0.24 -13.93 10.27 84.03 0.86 -13.07 16 14 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 15 C -0.07 -4.40 5.49 84.86 0.47 -3.94 16 16 N -0.95 -61.17 10.09 21.65 0.22 -60.95 16 17 Si 0.98 48.21 29.55 68.60 2.03 50.24 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 21 C 0.13 5.37 6.84 86.73 0.59 5.96 16 22 C -0.09 -2.84 3.19 -9.61 -0.03 -2.87 16 23 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 24 C -0.13 -3.16 9.16 71.98 0.66 -2.50 16 25 C 0.18 4.52 6.79 138.13 0.94 5.46 16 26 N -0.52 -17.41 11.25 -188.13 -2.12 -19.53 16 27 C -0.07 -1.83 11.87 83.52 0.99 -0.84 16 28 C -0.03 -0.58 11.58 83.09 0.96 0.38 16 29 N -0.45 -7.32 3.15 -537.61 -1.69 -9.01 16 30 C 0.06 0.23 10.75 127.77 1.37 1.60 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 34 H 0.13 1.52 8.08 -2.39 -0.02 1.50 16 35 H 0.11 1.80 7.87 -2.39 -0.02 1.78 16 36 H 0.42 8.48 8.57 -92.71 -0.79 7.68 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 3.58 5.87 -2.39 -0.01 3.57 16 39 H 0.24 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.03 1.12 7.76 -2.39 -0.02 1.10 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.04 1.14 8.06 -2.39 -0.02 1.12 16 45 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.22 1.53 8.06 -2.91 -0.02 1.50 16 47 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.10 0.06 7.33 -2.38 -0.02 0.04 16 Total: -1.00 -100.08 401.61 2.34 -97.75 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.15 Total: 17.24 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 9.34 Total: 25.62 kcal Atomic # 7 Polarization: -140.98 SS G_CDS: -8.21 Total: -149.19 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.98 Total: -41.65 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -100.08 2.34 -97.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210675187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.608 kcal (2) G-P(sol) polarization free energy of solvation -100.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds