Wall clock time and date at job start Tue Mar 31 2020 19:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 5 5 C 1.42909 * 113.99516 * 270.00121 * 4 2 1 6 6 C 1.50703 * 109.46868 * 179.97438 * 5 4 2 7 7 O 1.21289 * 120.00066 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63192 * 359.97438 * 8 6 5 10 10 C 1.53190 * 108.78259 * 233.59021 * 9 8 6 11 11 C 1.53048 * 109.30695 * 305.36237 * 10 9 8 12 12 C 1.53050 * 109.53485 * 61.36431 * 11 10 9 13 13 H 1.09000 * 109.49596 * 58.61801 * 12 11 10 14 14 N 1.46506 * 109.49224 * 178.68232 * 12 11 10 15 15 C 1.36933 * 119.99673 * 204.99943 * 14 12 11 16 16 H 1.08006 * 120.00136 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00106 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47396 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46800 * 119.99732 * 19 17 15 22 22 H 1.48500 * 109.47263 * 239.99842 * 19 17 15 23 23 C 1.46921 * 120.63070 * 179.72203 * 8 6 5 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 N 1.30502 * 125.64805 * 284.69812 * 24 2 1 26 26 C 1.34129 * 109.25382 * 179.89567 * 25 24 2 27 27 C 1.34664 * 108.02206 * 0.35847 * 26 25 24 28 28 N 1.35035 * 125.65115 * 105.00128 * 24 2 1 29 29 C 1.46501 * 126.39804 * 359.97438 * 28 24 2 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46835 * 299.99639 * 5 4 2 34 34 H 1.08994 * 109.47272 * 60.00221 * 5 4 2 35 35 H 1.09006 * 109.58586 * 353.37250 * 9 8 6 36 36 H 1.09000 * 109.58888 * 113.79842 * 9 8 6 37 37 H 1.08998 * 109.49744 * 65.30791 * 10 9 8 38 38 H 1.08996 * 109.50490 * 185.38524 * 10 9 8 39 39 H 1.08996 * 109.45976 * 181.38109 * 11 10 9 40 40 H 1.08992 * 109.46310 * 301.35741 * 11 10 9 41 41 H 0.96994 * 119.99844 * 24.99890 * 14 12 11 42 42 H 0.96998 * 119.99849 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.58948 * 246.20033 * 23 8 6 44 44 H 1.09000 * 109.58934 * 6.62723 * 23 8 6 45 45 H 1.07996 * 125.98781 * 180.18781 * 26 25 24 46 46 H 1.07995 * 126.59710 * 179.81240 * 27 26 25 47 47 H 1.09005 * 109.46822 * 90.00162 * 29 28 24 48 48 H 1.08997 * 109.47251 * 210.00330 * 29 28 24 49 49 H 1.08998 * 109.47296 * 330.00287 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7001 -0.6284 3.4615 7 8 2.8741 -1.8225 3.3399 8 7 2.9551 -0.0269 4.6403 9 6 2.7509 1.4190 4.8025 10 6 4.0432 2.0425 5.3390 11 6 4.4597 1.3187 6.6216 12 6 4.7267 -0.1564 6.3132 13 1 5.5093 -0.2344 5.5585 14 7 5.1557 -0.8414 7.5351 15 6 5.9212 -1.9738 7.4524 16 1 6.2090 -2.3617 6.4863 17 6 6.3272 -2.6233 8.6100 18 7 5.9769 -2.1503 9.7873 19 14 7.3708 -4.1685 8.4971 20 1 7.6266 -4.4899 7.0701 21 1 8.6635 -3.9446 9.1929 22 1 6.6526 -5.2989 9.1386 23 6 3.4373 -0.8055 5.7891 24 6 2.0324 -0.7104 -1.2304 25 7 2.0323 -2.0021 -1.4162 26 6 2.5498 -2.2755 -2.6231 27 6 2.8905 -1.1094 -3.2041 28 7 2.5626 -0.1162 -2.3210 29 6 2.7517 1.3226 -2.5215 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9319 0.9513 2.0451 34 1 1.2537 0.6547 2.5589 35 1 2.5036 1.8636 3.8384 36 1 1.9392 1.5965 5.5080 37 1 4.8318 1.9437 4.5931 38 1 3.8761 3.0978 5.5543 39 1 5.3657 1.7764 7.0189 40 1 3.6604 1.3965 7.3585 41 1 4.8975 -0.4928 8.4026 42 1 6.2610 -2.6040 10.5962 43 1 2.6806 -0.8061 6.5737 44 1 3.6431 -1.8292 5.4763 45 1 2.6741 -3.2586 -3.0524 46 1 3.3363 -0.9821 -4.1795 47 1 3.7345 1.6149 -2.1515 48 1 2.6801 1.5539 -3.5843 49 1 1.9813 1.8696 -1.9780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210871298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:52 Heat of formation + Delta-G solvation = 5.577253 kcal Electronic energy + Delta-G solvation = -29262.292092 eV Core-core repulsion = 25226.487390 eV Total energy + Delta-G solvation = -4035.804703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.35110 -40.00951 -38.29766 -37.01093 -34.47473 -34.34160 -32.58331 -32.26549 -31.17826 -29.02572 -28.91505 -27.51409 -27.35058 -24.77613 -23.99329 -23.65972 -21.90102 -21.59870 -20.33658 -20.09864 -18.88369 -17.73005 -17.16424 -17.07003 -16.56971 -16.26332 -15.96330 -15.51469 -14.96999 -14.76900 -14.49134 -14.20604 -14.12885 -13.89883 -13.68652 -13.53074 -13.34119 -13.24752 -13.13839 -13.00133 -12.70472 -12.52804 -12.41536 -12.27451 -12.10044 -11.41908 -11.28575 -11.05193 -10.83721 -10.66439 -10.58284 -10.15146 -10.11686 -9.98871 -9.85913 -9.81153 -9.71360 -9.44264 -9.05376 -8.66159 -8.32621 -6.97790 -5.76623 -3.06302 1.68397 2.28858 2.80236 2.82973 3.06025 3.47282 3.53991 3.56969 3.70493 4.05513 4.23753 4.32628 4.57016 4.60334 4.64317 4.66282 4.76358 4.78184 4.87665 4.90626 4.99294 5.08694 5.16986 5.21659 5.26855 5.38862 5.46111 5.49422 5.52163 5.58499 5.77955 5.86658 5.91864 5.97834 6.02256 6.15609 6.20385 6.34225 6.49405 6.51088 6.67074 6.78952 6.83953 6.90719 7.04121 7.65516 7.75632 7.94852 8.40894 8.44994 9.53734 10.07126 10.42406 11.45680 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.002426 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.158019 B =11539.488488 C =12679.879837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.176 3.824 3 H 0.072 0.928 4 O -0.334 6.334 5 C 0.043 3.957 6 C 0.510 3.490 7 O -0.513 6.513 8 N -0.607 5.607 9 C 0.107 3.893 10 C -0.130 4.130 11 C -0.126 4.126 12 C 0.168 3.832 13 H 0.051 0.949 14 N -0.718 5.718 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.094 3.906 24 C 0.202 3.798 25 N -0.456 5.456 26 C -0.028 4.028 27 C -0.057 4.057 28 N -0.459 5.459 29 C 0.068 3.932 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 16.249 -24.951 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.116 3.884 3 H 0.090 0.910 4 O -0.250 6.250 5 C -0.037 4.037 6 C 0.295 3.705 7 O -0.387 6.387 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.169 4.169 11 C -0.165 4.165 12 C 0.057 3.943 13 H 0.069 0.931 14 N -0.359 5.359 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.030 4.030 24 C -0.060 4.060 25 N -0.174 5.174 26 C -0.177 4.177 27 C -0.189 4.189 28 N -0.143 5.143 29 C -0.075 4.075 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.138 14.792 -24.497 30.708 hybrid contribution 0.821 0.227 -0.384 0.934 sum -10.317 15.020 -24.881 30.840 Atomic orbital electron populations 1.22243 0.93610 1.04483 1.02208 1.20021 0.94053 0.92970 0.81341 0.91025 1.88253 1.86313 1.32495 1.17951 1.22398 1.00937 0.93140 0.87214 1.20053 0.78840 0.88291 0.83301 1.90774 1.50622 1.14869 1.82406 1.48233 1.66070 1.08532 1.11549 1.21742 0.98301 0.80504 1.01111 1.21889 0.97129 0.99209 0.98677 1.21827 1.01652 0.96617 0.96364 1.20578 0.93242 0.89787 0.90688 0.93092 1.42384 1.61134 1.30004 1.02340 1.19328 1.23766 1.01319 0.92806 0.90958 1.24744 1.01276 0.99474 0.95225 1.69671 1.50337 1.41456 0.96614 0.86119 0.79707 0.83032 0.77421 1.20365 1.21877 1.21753 1.22881 0.97490 0.97322 0.85309 1.22802 1.03330 0.89231 0.90671 1.70312 1.18726 1.11787 1.16569 1.22435 1.04401 0.98313 0.92507 1.22716 1.09752 0.88207 0.98236 1.45263 1.46564 1.07635 1.14873 1.22091 1.03499 0.77787 1.04121 0.91290 0.91652 0.90271 0.90558 0.90312 0.90747 0.91171 0.91611 0.90971 0.91383 0.91967 0.78077 0.93537 0.91958 0.89045 0.81127 0.80668 0.90272 0.89303 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.51 37.16 0.35 -1.04 16 2 C 0.18 1.79 2.99 -27.88 -0.08 1.71 16 3 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 4 O -0.33 -4.82 9.50 -55.14 -0.52 -5.35 16 5 C 0.04 0.50 4.57 36.01 0.16 0.67 16 6 C 0.51 8.54 7.78 -10.99 -0.09 8.45 16 7 O -0.51 -11.48 15.91 -14.36 -0.23 -11.70 16 8 N -0.61 -9.32 2.97 -172.53 -0.51 -9.84 16 9 C 0.11 1.12 6.34 -3.72 -0.02 1.10 16 10 C -0.13 -1.44 6.08 -26.61 -0.16 -1.61 16 11 C -0.13 -1.93 5.35 -26.68 -0.14 -2.07 16 12 C 0.17 3.35 2.93 -67.60 -0.20 3.15 16 13 H 0.05 1.09 8.08 -51.93 -0.42 0.68 16 14 N -0.72 -17.99 5.12 -53.10 -0.27 -18.26 16 15 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 16 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 19 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 C 0.09 1.81 6.04 -3.51 -0.02 1.79 16 24 C 0.20 2.44 6.79 -155.42 -1.06 1.39 16 25 N -0.46 -6.86 11.25 -10.82 -0.12 -6.99 16 26 C -0.03 -0.32 11.87 -17.81 -0.21 -0.54 16 27 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 28 N -0.46 -4.06 3.15 -121.28 -0.38 -4.45 16 29 C 0.07 0.26 10.75 59.85 0.64 0.91 16 30 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.66 7.63 -51.93 -0.40 0.27 16 34 H 0.08 0.65 7.67 -51.93 -0.40 0.25 16 35 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.39 10.09 7.80 -40.82 -0.32 9.77 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.09 2.11 7.00 -51.93 -0.36 1.74 16 45 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 49 H 0.09 0.20 7.33 -51.93 -0.38 -0.18 16 LS Contribution 399.57 15.07 6.02 6.02 Total: -1.00 -39.31 399.57 -9.54 -48.85 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.96 Total: 5.38 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.26 Total: 5.82 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.56 Total: -67.11 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.75 Total: -17.05 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.31 -9.54 -48.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210871298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.425 kcal (2) G-P(sol) polarization free energy of solvation -39.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds