Wall clock time and date at job start Tue Mar 31 2020 19:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 5 5 C 1.42909 * 113.99516 * 270.00121 * 4 2 1 6 6 C 1.50703 * 109.46868 * 179.97438 * 5 4 2 7 7 O 1.21289 * 120.00066 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63192 * 359.97438 * 8 6 5 10 10 C 1.53190 * 108.78259 * 233.59021 * 9 8 6 11 11 C 1.53048 * 109.30695 * 305.36237 * 10 9 8 12 12 C 1.53050 * 109.53485 * 61.36431 * 11 10 9 13 13 H 1.09000 * 109.49596 * 58.61801 * 12 11 10 14 14 N 1.46506 * 109.49224 * 178.68232 * 12 11 10 15 15 C 1.36933 * 119.99673 * 204.99943 * 14 12 11 16 16 H 1.08006 * 120.00136 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00106 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47396 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46800 * 119.99732 * 19 17 15 22 22 H 1.48500 * 109.47263 * 239.99842 * 19 17 15 23 23 C 1.46921 * 120.63070 * 179.72203 * 8 6 5 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 N 1.30502 * 125.64805 * 284.69812 * 24 2 1 26 26 C 1.34129 * 109.25382 * 179.89567 * 25 24 2 27 27 C 1.34664 * 108.02206 * 0.35847 * 26 25 24 28 28 N 1.35035 * 125.65115 * 105.00128 * 24 2 1 29 29 C 1.46501 * 126.39804 * 359.97438 * 28 24 2 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46835 * 299.99639 * 5 4 2 34 34 H 1.08994 * 109.47272 * 60.00221 * 5 4 2 35 35 H 1.09006 * 109.58586 * 353.37250 * 9 8 6 36 36 H 1.09000 * 109.58888 * 113.79842 * 9 8 6 37 37 H 1.08998 * 109.49744 * 65.30791 * 10 9 8 38 38 H 1.08996 * 109.50490 * 185.38524 * 10 9 8 39 39 H 1.08996 * 109.45976 * 181.38109 * 11 10 9 40 40 H 1.08992 * 109.46310 * 301.35741 * 11 10 9 41 41 H 0.96994 * 119.99844 * 24.99890 * 14 12 11 42 42 H 0.96998 * 119.99849 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.58948 * 246.20033 * 23 8 6 44 44 H 1.09000 * 109.58934 * 6.62723 * 23 8 6 45 45 H 1.07996 * 125.98781 * 180.18781 * 26 25 24 46 46 H 1.07995 * 126.59710 * 179.81240 * 27 26 25 47 47 H 1.09005 * 109.46822 * 90.00162 * 29 28 24 48 48 H 1.08997 * 109.47251 * 210.00330 * 29 28 24 49 49 H 1.08998 * 109.47296 * 330.00287 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7001 -0.6284 3.4615 7 8 2.8741 -1.8225 3.3399 8 7 2.9551 -0.0269 4.6403 9 6 2.7509 1.4190 4.8025 10 6 4.0432 2.0425 5.3390 11 6 4.4597 1.3187 6.6216 12 6 4.7267 -0.1564 6.3132 13 1 5.5093 -0.2344 5.5585 14 7 5.1557 -0.8414 7.5351 15 6 5.9212 -1.9738 7.4524 16 1 6.2090 -2.3617 6.4863 17 6 6.3272 -2.6233 8.6100 18 7 5.9769 -2.1503 9.7873 19 14 7.3708 -4.1685 8.4971 20 1 7.6266 -4.4899 7.0701 21 1 8.6635 -3.9446 9.1929 22 1 6.6526 -5.2989 9.1386 23 6 3.4373 -0.8055 5.7891 24 6 2.0324 -0.7104 -1.2304 25 7 2.0323 -2.0021 -1.4162 26 6 2.5498 -2.2755 -2.6231 27 6 2.8905 -1.1094 -3.2041 28 7 2.5626 -0.1162 -2.3210 29 6 2.7517 1.3226 -2.5215 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9319 0.9513 2.0451 34 1 1.2537 0.6547 2.5589 35 1 2.5036 1.8636 3.8384 36 1 1.9392 1.5965 5.5080 37 1 4.8318 1.9437 4.5931 38 1 3.8761 3.0978 5.5543 39 1 5.3657 1.7764 7.0189 40 1 3.6604 1.3965 7.3585 41 1 4.8975 -0.4928 8.4026 42 1 6.2610 -2.6040 10.5962 43 1 2.6806 -0.8061 6.5737 44 1 3.6431 -1.8292 5.4763 45 1 2.6741 -3.2586 -3.0524 46 1 3.3363 -0.9821 -4.1795 47 1 3.7345 1.6149 -2.1515 48 1 2.6801 1.5539 -3.5843 49 1 1.9813 1.8696 -1.9780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210871298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:51 Heat of formation + Delta-G solvation = -22.994250 kcal Electronic energy + Delta-G solvation = -29263.531046 eV Core-core repulsion = 25226.487390 eV Total energy + Delta-G solvation = -4037.043656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.05493 -41.24852 -39.29303 -38.34575 -36.23357 -34.95417 -33.98929 -33.24552 -32.71810 -30.53269 -29.62837 -28.74960 -27.80060 -25.96044 -25.85776 -24.46635 -23.24156 -22.32339 -21.74495 -20.84257 -20.10921 -19.15008 -18.56506 -18.02556 -17.55265 -17.16375 -16.88432 -16.71402 -16.38148 -15.83150 -15.55907 -15.47244 -15.42864 -15.17064 -14.92595 -14.60201 -14.31456 -14.07773 -14.01421 -13.72654 -13.67442 -13.61118 -13.44042 -13.19209 -13.09170 -12.95625 -12.91275 -12.51386 -12.20189 -12.05979 -11.99877 -11.88059 -11.67107 -11.34471 -11.13780 -10.92751 -10.78233 -10.74638 -10.55112 -9.74801 -9.39140 -9.02813 -8.01690 -5.30412 0.98694 1.40931 1.43059 1.52866 1.57665 1.60273 1.94590 2.17598 2.50773 2.90573 3.31440 3.37040 3.52338 3.76782 3.84905 3.96753 4.01922 4.06621 4.07231 4.09964 4.14502 4.25208 4.30801 4.34931 4.39537 4.43804 4.54800 4.62712 4.67971 4.70556 4.75278 4.78371 4.84577 4.89125 4.92293 5.06432 5.17084 5.23148 5.32104 5.39286 5.42247 5.48830 5.56841 5.81025 6.01896 6.21994 6.26306 6.48761 7.20289 7.20838 7.28446 8.00920 8.26182 9.21049 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.002426 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.158019 B =11539.488488 C =12679.879837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.172 3.828 3 H 0.118 0.882 4 O -0.383 6.383 5 C 0.052 3.948 6 C 0.497 3.503 7 O -0.588 6.588 8 N -0.603 5.603 9 C 0.098 3.902 10 C -0.122 4.122 11 C -0.119 4.119 12 C 0.167 3.833 13 H 0.029 0.971 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.061 0.939 17 C -0.067 4.067 18 N -0.962 5.962 19 Si 0.966 3.034 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.291 1.291 23 C 0.108 3.892 24 C 0.181 3.819 25 N -0.523 5.523 26 C -0.072 4.072 27 C -0.037 4.037 28 N -0.454 5.454 29 C 0.056 3.944 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.378 0.622 42 H 0.253 0.747 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.175 0.825 46 H 0.215 0.785 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 20.813 -27.127 36.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.113 3.887 3 H 0.135 0.865 4 O -0.301 6.301 5 C -0.027 4.027 6 C 0.286 3.714 7 O -0.468 6.468 8 N -0.338 5.338 9 C -0.022 4.022 10 C -0.160 4.160 11 C -0.157 4.157 12 C 0.057 3.943 13 H 0.047 0.953 14 N -0.370 5.370 15 C -0.376 4.376 16 H 0.079 0.921 17 C -0.260 4.260 18 N -0.612 5.612 19 Si 0.795 3.205 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.218 1.218 23 C -0.018 4.018 24 C -0.082 4.082 25 N -0.242 5.242 26 C -0.220 4.220 27 C -0.171 4.171 28 N -0.137 5.137 29 C -0.084 4.084 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.211 0.789 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.192 0.808 46 H 0.232 0.768 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.917 19.459 -26.714 35.133 hybrid contribution 1.046 -1.145 0.199 1.563 sum -10.871 18.314 -26.515 34.009 Atomic orbital electron populations 1.22216 0.92670 1.02724 1.04353 1.20384 0.94763 0.94381 0.79135 0.86462 1.88209 1.86989 1.35121 1.19733 1.22514 1.03872 0.91965 0.84380 1.21232 0.77510 0.87978 0.84689 1.90742 1.53864 1.18452 1.83713 1.48282 1.64950 1.10558 1.09991 1.22235 0.98572 0.76854 1.04552 1.21896 0.97269 1.00945 0.95880 1.21755 1.01753 0.92979 0.99248 1.20757 0.92501 0.92794 0.88223 0.95304 1.42519 1.61131 1.29564 1.03753 1.19516 1.23529 1.02280 0.92313 0.92078 1.25457 1.03056 1.02410 0.95055 1.69785 1.51757 1.42717 0.96956 0.85189 0.78324 0.79656 0.77318 1.20138 1.21132 1.21781 1.22270 0.97275 0.95426 0.86863 1.23198 1.03896 0.88924 0.92202 1.70196 1.20948 1.14467 1.18617 1.22762 1.06499 1.00070 0.92665 1.23264 1.07480 0.87278 0.99060 1.45550 1.44941 1.09543 1.13647 1.22522 1.04810 0.74782 1.06305 0.89035 0.89459 0.94006 0.86472 0.85850 0.85688 0.89255 0.91748 0.86585 0.92096 0.91356 0.78916 0.93759 0.92160 0.94197 0.80769 0.76791 0.89342 0.86928 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.51 71.98 0.68 -1.63 16 2 C 0.17 3.06 2.99 29.85 0.09 3.15 16 3 H 0.12 0.89 6.72 -2.39 -0.02 0.88 16 4 O -0.38 -10.62 9.50 -129.94 -1.23 -11.85 16 5 C 0.05 1.01 4.57 71.24 0.33 1.33 16 6 C 0.50 16.44 7.78 87.66 0.68 17.12 16 7 O -0.59 -28.01 15.91 15.98 0.25 -27.75 16 8 N -0.60 -17.78 2.97 -818.17 -2.43 -20.20 16 9 C 0.10 1.59 6.34 86.36 0.55 2.13 16 10 C -0.12 -2.15 6.08 30.67 0.19 -1.97 16 11 C -0.12 -3.45 5.35 30.63 0.16 -3.28 16 12 C 0.17 6.83 2.93 45.20 0.13 6.96 16 13 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 14 N -0.73 -38.01 5.12 -321.92 -1.65 -39.66 16 15 C -0.24 -14.44 9.93 84.03 0.83 -13.61 16 16 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.96 -59.83 13.06 21.65 0.28 -59.55 16 19 Si 0.97 48.90 29.55 68.60 2.03 50.93 16 20 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 23 C 0.11 4.32 6.04 86.49 0.52 4.84 16 24 C 0.18 4.20 6.79 138.13 0.94 5.14 16 25 N -0.52 -16.49 11.25 -188.14 -2.12 -18.61 16 26 C -0.07 -1.76 11.87 83.52 0.99 -0.77 16 27 C -0.04 -0.59 11.58 83.08 0.96 0.37 16 28 N -0.45 -6.90 3.15 -537.62 -1.69 -8.59 16 29 C 0.06 0.19 10.75 127.77 1.37 1.56 16 30 H 0.09 0.85 7.87 -2.39 -0.02 0.83 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 1.33 7.63 -2.39 -0.02 1.31 16 34 H 0.12 1.31 7.67 -2.39 -0.02 1.29 16 35 H 0.13 0.84 5.93 -2.38 -0.01 0.83 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.38 20.49 7.80 -92.71 -0.72 19.76 16 42 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.04 1.99 7.00 -2.39 -0.02 1.98 16 45 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16 46 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 48 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 49 H 0.11 -0.10 7.33 -2.39 -0.02 -0.12 16 Total: -1.00 -97.79 399.57 2.57 -95.23 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.22 Total: 22.25 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 8.90 Total: 17.82 kcal Atomic # 7 Polarization: -139.01 SS G_CDS: -7.60 Total: -146.61 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.98 Total: -39.61 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -97.79 2.57 -95.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210871298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.232 kcal (2) G-P(sol) polarization free energy of solvation -97.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds