Wall clock time and date at job start Tue Mar 31 2020 19:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 O 1.42902 * 109.46945 * 119.99065 * 2 1 3 5 5 C 1.42892 * 114.00340 * 270.00186 * 4 2 1 6 6 C 1.50706 * 109.47075 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00029 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63206 * 359.97438 * 8 6 5 10 10 C 1.53198 * 108.77528 * 126.39232 * 9 8 6 11 11 C 1.53038 * 109.31265 * 54.63209 * 10 9 8 12 12 C 1.53038 * 109.54199 * 298.63895 * 11 10 9 13 13 H 1.09005 * 109.49608 * 301.37795 * 12 11 10 14 14 N 1.46496 * 109.50091 * 181.31360 * 12 11 10 15 15 C 1.36939 * 120.00077 * 155.06253 * 14 12 11 16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 12 17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99916 * 179.72546 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 359.72107 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00489 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00506 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00336 * 19 17 15 23 23 C 1.46937 * 120.60502 * 179.97438 * 8 6 5 24 24 C 1.50693 * 109.47367 * 239.99211 * 2 1 3 25 25 N 1.30500 * 125.65153 * 285.02726 * 24 2 1 26 26 C 1.34133 * 109.25314 * 179.97438 * 25 24 2 27 27 C 1.34671 * 108.02260 * 359.97438 * 26 25 24 28 28 N 1.35048 * 125.64970 * 104.72068 * 24 2 1 29 29 C 1.46504 * 126.39522 * 359.97438 * 28 24 2 30 30 H 1.08997 * 109.47136 * 60.00702 * 1 2 3 31 31 H 1.09002 * 109.46715 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47402 * 300.00656 * 1 2 3 33 33 H 1.09007 * 109.46978 * 60.00332 * 5 4 2 34 34 H 1.08997 * 109.47405 * 299.99764 * 5 4 2 35 35 H 1.09002 * 109.58398 * 6.60553 * 9 8 6 36 36 H 1.08995 * 109.70535 * 246.24548 * 9 8 6 37 37 H 1.08999 * 109.49305 * 294.68610 * 10 9 8 38 38 H 1.08994 * 109.52217 * 174.60501 * 10 9 8 39 39 H 1.09000 * 109.46171 * 178.61569 * 11 10 9 40 40 H 1.09002 * 109.44894 * 58.65055 * 11 10 9 41 41 H 0.97004 * 120.00009 * 335.06870 * 14 12 11 42 42 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.55844 * 113.80513 * 23 8 6 44 44 H 1.08999 * 109.60997 * 353.38228 * 23 8 6 45 45 H 1.08005 * 125.98821 * 180.02562 * 26 25 24 46 46 H 1.07997 * 126.59055 * 180.02562 * 27 26 25 47 47 H 1.08999 * 109.46796 * 89.99985 * 29 28 24 48 48 H 1.09002 * 109.47099 * 210.00470 * 29 28 24 49 49 H 1.09002 * 109.47242 * 330.00816 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2000 0.1832 2.2941 6 6 2.7013 -0.6279 3.4611 7 8 2.8760 -1.8218 3.3394 8 7 2.9556 -0.0264 4.6401 9 6 2.7493 1.4192 4.8028 10 6 1.8395 1.6544 6.0127 11 6 2.4394 0.9631 7.2392 12 6 2.5266 -0.5436 6.9860 13 1 1.5315 -0.9352 6.7747 14 7 3.0718 -1.2082 8.1722 15 6 2.7872 -2.5263 8.4103 16 1 2.1571 -3.0748 7.7258 17 6 3.3034 -3.1558 9.5346 18 7 3.0254 -4.4212 9.7663 19 14 4.3928 -2.2068 10.7189 20 1 3.5515 -1.5730 11.7656 21 1 5.3589 -3.1371 11.3563 22 1 5.1339 -1.1561 9.9760 23 6 3.4442 -0.8043 5.7869 24 6 2.0324 -0.7105 -1.2303 25 7 2.0267 -2.0019 -1.4185 26 6 2.5478 -2.2755 -2.6238 27 6 2.8887 -1.1094 -3.2048 28 7 2.5577 -0.1161 -2.3232 29 6 2.7405 1.3232 -2.5266 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2536 0.6549 2.5588 34 1 2.9319 0.9515 2.0450 35 1 2.2783 1.8242 3.9071 36 1 3.7082 1.9112 4.9657 37 1 0.8510 1.2423 5.8100 38 1 1.7556 2.7244 6.2028 39 1 1.8067 1.1495 8.1069 40 1 3.4380 1.3582 7.4263 41 1 3.6344 -0.7144 8.7892 42 1 3.3864 -4.8612 10.5517 43 1 4.4608 -0.4958 6.0305 44 1 3.4314 -1.8661 5.5408 45 1 2.6714 -3.2587 -3.0534 46 1 3.3341 -0.9822 -4.1804 47 1 3.7229 1.6201 -2.1593 48 1 2.6655 1.5524 -3.5896 49 1 1.9693 1.8680 -1.9821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210871302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:58 Heat of formation + Delta-G solvation = 10.624334 kcal Electronic energy + Delta-G solvation = -29254.767518 eV Core-core repulsion = 25219.181674 eV Total energy + Delta-G solvation = -4035.585845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35812 -40.05936 -38.33790 -37.09214 -34.62440 -34.35151 -32.58729 -32.29997 -31.33013 -29.36792 -28.93646 -27.72529 -27.37173 -24.86851 -23.92838 -23.57411 -21.76200 -21.60247 -20.44611 -20.11597 -18.96685 -17.74192 -17.54318 -17.17499 -16.62297 -16.25385 -15.98136 -15.45955 -14.99528 -14.88215 -14.54973 -14.30045 -14.21782 -13.93847 -13.75647 -13.56490 -13.28665 -13.17501 -13.12271 -13.01539 -12.79956 -12.60653 -12.48160 -12.32539 -12.17113 -11.65545 -11.33140 -11.21850 -10.92866 -10.74426 -10.66350 -10.30191 -10.12074 -9.99526 -9.89218 -9.86623 -9.57903 -9.48385 -9.08198 -8.66761 -8.38923 -7.27779 -5.74297 -3.12061 1.67612 2.27323 2.77275 2.81451 3.04169 3.37977 3.39810 3.46265 3.67939 4.05077 4.22234 4.31093 4.55639 4.59752 4.62487 4.63942 4.70170 4.76437 4.84395 4.86427 4.94110 5.04316 5.12515 5.17134 5.27525 5.34165 5.39722 5.44522 5.45763 5.46846 5.68264 5.80268 5.88506 5.88986 5.97491 6.01063 6.05438 6.21965 6.38093 6.49722 6.61452 6.73699 6.76488 6.87135 6.95723 7.60508 7.94535 8.01701 8.40773 8.44877 9.21168 9.92504 10.10660 11.43681 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002276 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.524343 B =12299.542582 C =13129.337715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.072 0.928 4 O -0.333 6.333 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.508 6.508 8 N -0.609 5.609 9 C 0.107 3.893 10 C -0.130 4.130 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.060 0.940 14 N -0.742 5.742 15 C -0.248 4.248 16 H 0.092 0.908 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.095 3.905 24 C 0.202 3.798 25 N -0.455 5.455 26 C -0.027 4.027 27 C -0.057 4.057 28 N -0.459 5.459 29 C 0.068 3.932 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 21.760 -25.793 33.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.117 3.883 3 H 0.089 0.911 4 O -0.250 6.250 5 C -0.037 4.037 6 C 0.295 3.705 7 O -0.382 6.382 8 N -0.345 5.345 9 C -0.017 4.017 10 C -0.169 4.169 11 C -0.168 4.168 12 C 0.062 3.938 13 H 0.079 0.921 14 N -0.384 5.384 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.189 4.189 18 N -0.577 5.577 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.029 4.029 24 C -0.060 4.060 25 N -0.173 5.173 26 C -0.176 4.176 27 C -0.190 4.190 28 N -0.144 5.144 29 C -0.075 4.075 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.645 20.193 -25.300 32.478 hybrid contribution 1.267 1.544 0.209 2.008 sum -1.378 21.737 -25.091 33.226 Atomic orbital electron populations 1.22249 0.93542 1.04591 1.02228 1.20018 0.94114 0.92895 0.81312 0.91067 1.88252 1.86306 1.32483 1.17941 1.22389 1.00999 0.93075 0.87192 1.20056 0.78802 0.88281 0.83315 1.90789 1.50307 1.14730 1.82362 1.48191 1.66436 1.08555 1.11352 1.21735 0.99931 0.81185 0.98827 1.21878 0.99426 1.00566 0.95007 1.21862 1.01005 0.96493 0.97447 1.20478 0.96264 0.90439 0.86630 0.92148 1.42728 1.60400 1.10758 1.24530 1.19114 1.26261 0.85277 1.07132 0.88988 1.24694 1.00237 0.95756 0.98250 1.69708 1.48942 1.09941 1.29125 0.86553 0.80923 0.79286 0.81747 1.21091 1.21720 1.20347 1.22716 0.97811 0.97835 0.84582 1.22806 1.03355 0.89243 0.90624 1.70324 1.18574 1.11792 1.16623 1.22447 1.04245 0.98325 0.92597 1.22713 1.09781 0.88199 0.98272 1.45266 1.46770 1.07575 1.14776 1.22085 1.03463 0.77815 1.04111 0.91657 0.90188 0.91239 0.90165 0.90694 0.90609 0.91306 0.91280 0.90891 0.91258 0.92137 0.80498 0.93001 0.92172 0.88558 0.81108 0.80675 0.90351 0.89302 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.51 37.16 0.35 -1.08 16 2 C 0.18 1.79 2.99 -27.89 -0.08 1.70 16 3 H 0.07 0.45 6.73 -51.93 -0.35 0.10 16 4 O -0.33 -4.79 9.50 -55.14 -0.52 -5.32 16 5 C 0.04 0.49 4.57 36.01 0.16 0.66 16 6 C 0.51 8.42 7.77 -10.98 -0.09 8.33 16 7 O -0.51 -11.36 15.91 -14.35 -0.23 -11.59 16 8 N -0.61 -9.06 2.97 -172.74 -0.51 -9.57 16 9 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 10 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 11 C -0.13 -1.83 5.35 -26.69 -0.14 -1.97 16 12 C 0.17 3.29 2.92 -67.80 -0.20 3.09 16 13 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 14 N -0.74 -17.45 4.93 -53.29 -0.26 -17.71 16 15 C -0.25 -7.11 10.41 -15.06 -0.16 -7.26 16 16 H 0.09 2.89 8.06 -52.49 -0.42 2.46 16 17 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 18 N -0.93 -29.78 13.97 55.49 0.78 -29.01 16 19 Si 0.88 22.15 27.73 -169.99 -4.71 17.44 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.28 -6.48 6.53 56.52 0.37 -6.11 16 23 C 0.09 1.77 6.02 -3.69 -0.02 1.74 16 24 C 0.20 2.42 6.79 -155.41 -1.05 1.37 16 25 N -0.46 -6.83 11.25 -10.81 -0.12 -6.95 16 26 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 27 C -0.06 -0.49 11.58 -16.56 -0.19 -0.69 16 28 N -0.46 -3.97 3.15 -121.28 -0.38 -4.35 16 29 C 0.07 0.25 10.75 59.85 0.64 0.89 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 33 H 0.08 0.67 7.42 -51.92 -0.39 0.28 16 34 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 35 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.36 8.24 5.67 -40.82 -0.23 8.00 16 42 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 2.20 7.01 -51.93 -0.36 1.84 16 45 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 49 H 0.09 0.18 7.33 -51.93 -0.38 -0.20 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -40.58 396.45 -9.18 -49.77 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.92 Total: 5.43 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.27 Total: 5.89 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.50 Total: -67.59 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.75 Total: -16.91 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.58 -9.18 -49.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210871302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.390 kcal (2) G-P(sol) polarization free energy of solvation -40.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds