Wall clock time and date at job start Tue Mar 31 2020 19:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00389 * 2 1 4 4 C 1.52991 * 109.47752 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47785 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47372 * 179.97438 * 5 4 3 7 7 C 1.34263 * 125.75329 * 125.00196 * 6 5 4 8 8 C 1.38036 * 107.41736 * 180.02562 * 7 6 5 9 9 C 1.47433 * 126.41570 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99771 * 353.14025 * 9 8 7 11 11 N 1.34775 * 119.99890 * 173.14577 * 9 8 7 12 12 C 1.47028 * 125.64663 * 174.16686 * 11 9 8 13 13 C 1.54319 * 107.27238 * 178.95925 * 12 11 9 14 14 H 1.09003 * 110.87403 * 96.23982 * 13 12 11 15 15 C 1.52993 * 110.71930 * 219.44302 * 13 12 11 16 16 C 1.55159 * 102.94270 * 337.80940 * 13 12 11 17 17 H 1.09010 * 110.99813 * 277.39084 * 16 13 12 18 18 N 1.46497 * 111.00616 * 153.57782 * 16 13 12 19 19 C 1.36936 * 119.99811 * 154.99967 * 18 16 13 20 20 H 1.07996 * 120.00224 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99750 * 179.97438 * 19 18 16 22 22 N 1.31628 * 119.99867 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00262 * 180.27485 * 21 19 18 24 24 H 1.48496 * 109.47275 * 179.72906 * 23 21 19 25 25 H 1.48503 * 109.47049 * 299.72669 * 23 21 19 26 26 H 1.48497 * 109.46977 * 59.72388 * 23 21 19 27 27 C 1.47422 * 125.65160 * 354.19085 * 11 9 8 28 28 C 1.41290 * 107.17001 * 0.22608 * 8 7 6 29 29 N 1.30441 * 108.02325 * 359.61438 * 28 8 7 30 30 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47571 * 300.00046 * 1 2 3 32 32 H 1.09005 * 109.46550 * 60.00824 * 1 2 3 33 33 H 1.08998 * 109.47159 * 59.99252 * 3 2 1 34 34 H 1.09003 * 109.46813 * 300.00121 * 3 2 1 35 35 H 1.08998 * 109.47220 * 59.99508 * 4 3 2 36 36 H 1.09003 * 109.47238 * 300.00079 * 4 3 2 37 37 H 1.08998 * 109.47037 * 59.99525 * 5 4 3 38 38 H 1.09002 * 109.46614 * 299.99952 * 5 4 3 39 39 H 1.08001 * 126.28934 * 359.97438 * 7 6 5 40 40 H 1.09000 * 109.87991 * 59.53671 * 12 11 9 41 41 H 1.09000 * 109.87963 * 298.38226 * 12 11 9 42 42 H 1.09008 * 109.47012 * 173.51806 * 15 13 12 43 43 H 1.08990 * 109.47437 * 293.52032 * 15 13 12 44 44 H 1.09005 * 109.47422 * 53.52510 * 15 13 12 45 45 H 0.96998 * 119.99575 * 334.99473 * 18 16 13 46 46 H 0.96994 * 119.99430 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.36988 * 85.26729 * 27 11 9 48 48 H 1.09004 * 110.36438 * 322.94433 * 27 11 9 49 49 H 1.08004 * 125.98600 * 179.73948 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 0.0012 7 6 6.4503 3.0270 -0.8911 8 6 7.7365 2.6750 -0.5344 9 6 8.9758 3.0652 -1.2312 10 8 8.9164 3.6589 -2.2908 11 7 10.1745 2.7639 -0.6938 12 6 11.4799 2.9831 -1.3337 13 6 12.5623 2.5130 -0.3393 14 1 12.8748 1.4921 -0.5594 15 6 13.7633 3.4606 -0.3586 16 6 11.8314 2.5806 1.0276 17 1 11.8461 3.5941 1.4287 18 7 12.4129 1.6329 1.9815 19 6 12.2997 1.8597 3.3272 20 1 11.7821 2.7372 3.6854 21 6 12.8503 0.9614 4.2311 22 7 13.4816 -0.1079 3.7946 23 14 12.6893 1.2666 6.0669 24 1 13.3518 0.1659 6.8117 25 1 13.3363 2.5577 6.4127 26 1 11.2518 1.3188 6.4358 27 6 10.3939 2.1595 0.6328 28 6 7.6425 1.8658 0.6200 29 7 6.3811 1.7530 0.9323 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8890 36 1 3.8567 0.6439 0.8909 37 1 3.8358 3.1238 0.8895 38 1 3.8365 3.1226 -0.8905 39 1 6.1655 3.6397 -1.7336 40 1 11.6123 4.0428 -1.5522 41 1 11.5440 2.4020 -2.2536 42 1 14.4621 3.1776 0.4288 43 1 14.2609 3.3969 -1.3261 44 1 13.4226 4.4825 -0.1917 45 1 12.8781 0.8449 1.6598 46 1 13.8659 -0.7357 4.4262 47 1 10.3198 1.0737 0.5720 48 1 9.6733 2.5501 1.3515 49 1 8.4703 1.4205 1.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216280361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:12 Heat of formation + Delta-G solvation = 14.731257 kcal Electronic energy + Delta-G solvation = -28694.525857 eV Core-core repulsion = 24659.118101 eV Total energy + Delta-G solvation = -4035.407755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43483 -39.45211 -38.44694 -37.34362 -35.13887 -34.04378 -32.57319 -31.39351 -30.73204 -30.15087 -27.67581 -27.55065 -26.40197 -25.26152 -24.10811 -22.66362 -22.46509 -21.20934 -20.63744 -19.82089 -19.26587 -17.51730 -17.19302 -16.80566 -16.57744 -16.10035 -15.97048 -15.58107 -15.39730 -14.90120 -14.58860 -14.37123 -14.20929 -13.79729 -13.56917 -13.24562 -12.96994 -12.86541 -12.77363 -12.69552 -12.57624 -12.43956 -12.24163 -11.73579 -11.60126 -11.58699 -11.52814 -11.10748 -10.98777 -10.90236 -10.64039 -10.58792 -10.25141 -10.16061 -9.95130 -9.78527 -9.61797 -9.59743 -8.98709 -8.74224 -8.21949 -7.07664 -5.84398 -3.15072 1.51587 2.15718 2.27965 3.26071 3.33132 3.41451 3.46756 3.46991 3.64928 4.17271 4.47900 4.52367 4.53988 4.66129 4.68988 4.80246 4.82328 4.88751 4.91069 4.95531 5.04191 5.17461 5.22013 5.22718 5.27607 5.39675 5.55824 5.57187 5.62568 5.72064 5.75928 5.79375 5.86556 5.98191 6.05436 6.24989 6.26508 6.39824 6.43088 6.48628 6.61180 6.64490 6.70337 6.74001 6.89094 7.53650 7.64222 7.88678 8.32938 8.50358 9.45243 9.98673 10.33781 11.37304 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.002585 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.888818 B =10827.713860 C =13154.847428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.137 3.863 6 N -0.366 5.366 7 C 0.122 3.878 8 C -0.283 4.283 9 C 0.607 3.393 10 O -0.565 6.565 11 N -0.609 5.609 12 C 0.120 3.880 13 C -0.116 4.116 14 H 0.084 0.916 15 C -0.134 4.134 16 C 0.177 3.823 17 H 0.069 0.931 18 N -0.709 5.709 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.064 3.936 28 C 0.078 3.922 29 N -0.294 5.294 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.186 0.814 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.217 5.502 -10.591 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.015 3.985 6 N -0.145 5.145 7 C -0.029 4.029 8 C -0.298 4.298 9 C 0.397 3.603 10 O -0.446 6.446 11 N -0.341 5.341 12 C -0.003 4.003 13 C -0.136 4.136 14 H 0.102 0.898 15 C -0.191 4.191 16 C 0.064 3.936 17 H 0.087 0.913 18 N -0.348 5.348 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.062 4.062 28 C -0.110 4.110 29 N -0.114 5.114 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -21.209 5.201 -10.135 24.075 hybrid contribution 0.338 0.332 0.418 0.631 sum -20.871 5.533 -9.717 23.678 Atomic orbital electron populations 1.22766 0.80667 1.03032 1.00031 1.87900 1.19959 1.27568 1.95425 1.22378 0.93155 0.85177 1.00498 1.21758 0.93354 0.96520 1.05568 1.21598 0.74302 0.98192 1.04369 1.48492 1.06604 1.38516 1.20855 1.22882 0.89375 0.96290 0.94365 1.20218 0.93376 1.12886 1.03345 1.16864 0.81500 0.78211 0.83715 1.90721 1.87161 1.43209 1.23501 1.48206 1.04983 1.61673 1.19235 1.21954 0.81753 1.00799 0.95826 1.22530 0.94633 1.00395 0.95998 0.89763 1.21657 0.97446 0.98509 1.01516 1.21386 0.88881 0.94784 0.88533 0.91288 1.42289 1.64876 1.25775 1.01896 1.19195 1.30417 1.06047 0.82262 0.91022 1.24754 1.00465 0.97103 0.98063 1.69649 1.41181 1.13164 1.33614 0.86280 0.77664 0.77047 0.85251 1.21691 1.21209 1.21101 1.23795 1.02024 0.98113 0.82248 1.24942 0.94967 0.96223 0.94819 1.77242 1.03791 1.17194 1.13134 0.89430 0.93916 0.93987 0.92808 0.93005 0.90285 0.89090 0.89116 0.88204 0.79734 0.91614 0.92058 0.91351 0.93265 0.92934 0.77836 0.93301 0.91036 0.90584 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.50 10.70 -35.23 -0.38 -3.88 16 3 C 0.07 0.43 5.94 37.15 0.22 0.65 16 4 C -0.13 -1.07 5.76 -26.73 -0.15 -1.23 16 5 C 0.14 0.98 6.49 -4.04 -0.03 0.95 16 6 N -0.37 -4.21 3.65 -60.81 -0.22 -4.43 16 7 C 0.12 1.47 11.26 -16.56 -0.19 1.29 16 8 C -0.28 -4.24 6.04 -105.07 -0.63 -4.88 16 9 C 0.61 10.32 7.83 -12.52 -0.10 10.22 16 10 O -0.57 -10.82 17.24 5.28 0.09 -10.73 16 11 N -0.61 -9.95 3.33 -171.78 -0.57 -10.52 16 12 C 0.12 1.82 6.47 -3.06 -0.02 1.80 16 13 C -0.12 -1.80 3.20 -88.79 -0.28 -2.09 16 14 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 15 C -0.13 -1.90 9.16 37.15 0.34 -1.56 16 16 C 0.18 3.25 3.16 -65.78 -0.21 3.04 16 17 H 0.07 1.31 8.00 -51.92 -0.42 0.90 16 18 N -0.71 -16.23 5.24 -51.35 -0.27 -16.50 16 19 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 23 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.06 1.08 4.79 -2.53 -0.01 1.06 16 28 C 0.08 1.17 10.27 -16.98 -0.17 0.99 16 29 N -0.29 -4.29 12.33 30.86 0.38 -3.91 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.07 0.98 7.76 -51.93 -0.40 0.58 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 45 H 0.39 9.49 7.76 -40.82 -0.32 9.17 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.07 1.24 7.71 -51.93 -0.40 0.84 16 48 H 0.08 1.27 5.96 -51.93 -0.31 0.96 16 49 H 0.20 3.04 4.88 -52.48 -0.26 2.78 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -32.87 403.21 -7.53 -40.40 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.97 Total: 8.25 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.37 Total: 4.67 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.04 Total: -61.36 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.29 Total: -14.60 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.87 -7.53 -40.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216280361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.133 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds