Wall clock time and date at job start Tue Mar 31 2020 19:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00389 * 2 1 4 4 C 1.52991 * 109.47752 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47785 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47372 * 179.97438 * 5 4 3 7 7 C 1.34263 * 125.75329 * 125.00196 * 6 5 4 8 8 C 1.38036 * 107.41736 * 180.02562 * 7 6 5 9 9 C 1.47433 * 126.41570 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99771 * 353.14025 * 9 8 7 11 11 N 1.34775 * 119.99890 * 173.14577 * 9 8 7 12 12 C 1.47028 * 125.64663 * 174.16686 * 11 9 8 13 13 C 1.54319 * 107.27238 * 178.95925 * 12 11 9 14 14 H 1.09003 * 110.87403 * 96.23982 * 13 12 11 15 15 C 1.52993 * 110.71930 * 219.44302 * 13 12 11 16 16 C 1.55159 * 102.94270 * 337.80940 * 13 12 11 17 17 H 1.09010 * 110.99813 * 277.39084 * 16 13 12 18 18 N 1.46497 * 111.00616 * 153.57782 * 16 13 12 19 19 C 1.36936 * 119.99811 * 154.99967 * 18 16 13 20 20 H 1.07996 * 120.00224 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99750 * 179.97438 * 19 18 16 22 22 N 1.31628 * 119.99867 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00262 * 180.27485 * 21 19 18 24 24 H 1.48496 * 109.47275 * 179.72906 * 23 21 19 25 25 H 1.48503 * 109.47049 * 299.72669 * 23 21 19 26 26 H 1.48497 * 109.46977 * 59.72388 * 23 21 19 27 27 C 1.47422 * 125.65160 * 354.19085 * 11 9 8 28 28 C 1.41290 * 107.17001 * 0.22608 * 8 7 6 29 29 N 1.30441 * 108.02325 * 359.61438 * 28 8 7 30 30 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47571 * 300.00046 * 1 2 3 32 32 H 1.09005 * 109.46550 * 60.00824 * 1 2 3 33 33 H 1.08998 * 109.47159 * 59.99252 * 3 2 1 34 34 H 1.09003 * 109.46813 * 300.00121 * 3 2 1 35 35 H 1.08998 * 109.47220 * 59.99508 * 4 3 2 36 36 H 1.09003 * 109.47238 * 300.00079 * 4 3 2 37 37 H 1.08998 * 109.47037 * 59.99525 * 5 4 3 38 38 H 1.09002 * 109.46614 * 299.99952 * 5 4 3 39 39 H 1.08001 * 126.28934 * 359.97438 * 7 6 5 40 40 H 1.09000 * 109.87991 * 59.53671 * 12 11 9 41 41 H 1.09000 * 109.87963 * 298.38226 * 12 11 9 42 42 H 1.09008 * 109.47012 * 173.51806 * 15 13 12 43 43 H 1.08990 * 109.47437 * 293.52032 * 15 13 12 44 44 H 1.09005 * 109.47422 * 53.52510 * 15 13 12 45 45 H 0.96998 * 119.99575 * 334.99473 * 18 16 13 46 46 H 0.96994 * 119.99430 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.36988 * 85.26729 * 27 11 9 48 48 H 1.09004 * 110.36438 * 322.94433 * 27 11 9 49 49 H 1.08004 * 125.98600 * 179.73948 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 0.0012 7 6 6.4503 3.0270 -0.8911 8 6 7.7365 2.6750 -0.5344 9 6 8.9758 3.0652 -1.2312 10 8 8.9164 3.6589 -2.2908 11 7 10.1745 2.7639 -0.6938 12 6 11.4799 2.9831 -1.3337 13 6 12.5623 2.5130 -0.3393 14 1 12.8748 1.4921 -0.5594 15 6 13.7633 3.4606 -0.3586 16 6 11.8314 2.5806 1.0276 17 1 11.8461 3.5941 1.4287 18 7 12.4129 1.6329 1.9815 19 6 12.2997 1.8597 3.3272 20 1 11.7821 2.7372 3.6854 21 6 12.8503 0.9614 4.2311 22 7 13.4816 -0.1079 3.7946 23 14 12.6893 1.2666 6.0669 24 1 13.3518 0.1659 6.8117 25 1 13.3363 2.5577 6.4127 26 1 11.2518 1.3188 6.4358 27 6 10.3939 2.1595 0.6328 28 6 7.6425 1.8658 0.6200 29 7 6.3811 1.7530 0.9323 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8890 36 1 3.8567 0.6439 0.8909 37 1 3.8358 3.1238 0.8895 38 1 3.8365 3.1226 -0.8905 39 1 6.1655 3.6397 -1.7336 40 1 11.6123 4.0428 -1.5522 41 1 11.5440 2.4020 -2.2536 42 1 14.4621 3.1776 0.4288 43 1 14.2609 3.3969 -1.3261 44 1 13.4226 4.4825 -0.1917 45 1 12.8781 0.8449 1.6598 46 1 13.8659 -0.7357 4.4262 47 1 10.3198 1.0737 0.5720 48 1 9.6733 2.5501 1.3515 49 1 8.4703 1.4205 1.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216280361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:11 Heat of formation + Delta-G solvation = -7.430570 kcal Electronic energy + Delta-G solvation = -28695.486866 eV Core-core repulsion = 24659.118101 eV Total energy + Delta-G solvation = -4036.368764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47829 -40.75970 -39.00404 -38.73664 -35.92792 -35.77666 -33.94717 -32.58767 -32.19091 -31.21562 -29.17767 -28.32713 -27.33598 -26.00863 -25.91260 -23.95025 -23.22321 -22.45221 -21.64094 -21.21091 -20.45390 -19.10219 -18.48824 -17.49369 -17.37507 -17.18139 -17.13097 -16.56410 -16.44374 -16.16494 -15.73039 -15.48133 -15.30544 -15.14998 -14.92395 -14.54704 -14.40391 -14.21636 -13.94864 -13.75617 -13.33330 -13.28884 -13.08258 -12.97036 -12.83110 -12.79321 -12.75622 -12.31762 -12.21933 -12.09697 -12.06615 -11.97457 -11.84579 -11.67351 -11.37843 -10.97878 -10.84387 -10.65213 -10.61200 -9.87429 -9.51621 -8.99453 -7.91282 -5.20271 0.50560 1.10054 1.33853 1.51854 1.53166 1.58866 2.06010 2.40768 2.59594 2.75047 3.36872 3.40058 3.61495 3.77396 3.84554 3.85328 3.97098 4.00463 4.03831 4.10914 4.21166 4.22590 4.34422 4.39205 4.43540 4.46790 4.49826 4.54022 4.54749 4.58163 4.64599 4.76394 4.85266 4.89313 4.94250 4.96119 5.08132 5.13771 5.15398 5.25075 5.35296 5.44494 5.50090 5.58831 5.86049 6.21383 6.29531 6.47997 6.56488 7.19540 7.37787 8.09140 8.33902 9.31113 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.002585 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.888818 B =10827.713860 C =13154.847428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.066 3.934 4 C -0.127 4.127 5 C 0.129 3.871 6 N -0.355 5.355 7 C 0.143 3.857 8 C -0.314 4.314 9 C 0.607 3.393 10 O -0.589 6.589 11 N -0.610 5.610 12 C 0.122 3.878 13 C -0.105 4.105 14 H 0.080 0.920 15 C -0.128 4.128 16 C 0.171 3.829 17 H 0.065 0.935 18 N -0.717 5.717 19 C -0.239 4.239 20 H 0.077 0.923 21 C -0.068 4.068 22 N -0.965 5.965 23 Si 0.965 3.035 24 H -0.299 1.299 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.081 3.919 28 C 0.070 3.930 29 N -0.320 5.320 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.220 0.780 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.377 0.623 46 H 0.250 0.750 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.348 7.398 -11.634 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.011 4.011 4 C -0.166 4.166 5 C 0.010 3.990 6 N -0.134 5.134 7 C -0.010 4.010 8 C -0.329 4.329 9 C 0.398 3.602 10 O -0.472 6.472 11 N -0.342 5.342 12 C -0.001 4.001 13 C -0.125 4.125 14 H 0.098 0.902 15 C -0.186 4.186 16 C 0.060 3.940 17 H 0.083 0.917 18 N -0.356 5.356 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.260 4.260 22 N -0.615 5.615 23 Si 0.795 3.205 24 H -0.226 1.226 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.045 4.045 28 C -0.117 4.117 29 N -0.140 5.140 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.160 0.840 39 H 0.236 0.764 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.210 0.790 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -23.384 7.132 -11.183 26.884 hybrid contribution 0.855 -0.216 0.658 1.101 sum -22.528 6.915 -10.526 25.809 Atomic orbital electron populations 1.22922 0.79152 1.03715 1.01174 1.87849 1.21780 1.29151 1.95706 1.22453 0.91665 0.84683 1.02306 1.21651 0.94873 0.96648 1.03385 1.22060 0.71564 0.98121 1.07278 1.48832 1.08046 1.36905 1.19571 1.23353 0.88333 0.95006 0.94335 1.20210 0.93852 1.14750 1.04100 1.17117 0.81966 0.77628 0.83444 1.90697 1.87489 1.44501 1.24467 1.48221 1.05526 1.61570 1.18901 1.21993 0.80925 1.01403 0.95751 1.22433 0.95187 1.00741 0.94113 0.90176 1.21613 0.96417 0.98361 1.02184 1.21529 0.89946 0.93431 0.89109 0.91705 1.42358 1.65257 1.26226 1.01749 1.19542 1.28520 1.05418 0.83635 0.90479 1.25453 1.01403 0.97441 1.01753 1.69793 1.43084 1.14252 1.34333 0.85335 0.77586 0.76644 0.80930 1.22551 1.20533 1.20571 1.23435 1.00682 0.97613 0.82758 1.24800 0.95129 0.96637 0.95144 1.77182 1.03861 1.18332 1.14582 0.89156 0.92972 0.92569 0.91490 0.90545 0.91680 0.92089 0.87527 0.83969 0.76386 0.90816 0.91196 0.93373 0.90807 0.92137 0.78993 0.94079 0.91807 0.90537 0.78900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.15 10.70 -148.98 -1.59 -8.74 16 3 C 0.07 0.71 5.94 71.98 0.43 1.14 16 4 C -0.13 -1.86 5.76 30.59 0.18 -1.68 16 5 C 0.13 1.44 6.49 86.38 0.56 2.00 16 6 N -0.36 -7.43 3.65 -346.31 -1.26 -8.70 16 7 C 0.14 3.09 11.26 84.27 0.95 4.04 16 8 C -0.31 -9.11 6.04 -20.15 -0.12 -9.23 16 9 C 0.61 20.06 7.83 86.67 0.68 20.74 16 10 O -0.59 -21.70 17.24 -4.03 -0.07 -21.77 16 11 N -0.61 -19.58 3.33 -815.65 -2.71 -22.30 16 12 C 0.12 3.54 6.47 86.73 0.56 4.11 16 13 C -0.10 -3.20 3.20 -9.61 -0.03 -3.23 16 14 H 0.08 2.54 8.00 -2.39 -0.02 2.52 16 15 C -0.13 -3.49 9.16 71.98 0.66 -2.83 16 16 C 0.17 6.27 3.16 46.39 0.15 6.41 16 17 H 0.06 2.45 8.00 -2.38 -0.02 2.43 16 18 N -0.72 -33.32 5.24 -316.37 -1.66 -34.98 16 19 C -0.24 -12.46 9.96 84.03 0.84 -11.63 16 20 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 22 N -0.96 -56.78 13.06 21.65 0.28 -56.50 16 23 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 C 0.08 2.73 4.79 86.86 0.42 3.15 16 28 C 0.07 2.10 10.27 85.65 0.88 2.98 16 29 N -0.32 -9.19 12.33 -56.28 -0.69 -9.89 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.14 0.46 8.06 -2.39 -0.02 0.44 16 39 H 0.22 3.15 8.06 -2.91 -0.02 3.12 16 40 H 0.07 2.06 7.76 -2.39 -0.02 2.04 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.54 8.06 -2.38 -0.02 1.52 16 45 H 0.38 18.97 7.76 -92.71 -0.72 18.25 16 46 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.06 2.26 7.71 -2.39 -0.02 2.25 16 48 H 0.08 2.58 5.96 -2.38 -0.01 2.57 16 49 H 0.19 6.00 4.88 -2.91 -0.01 5.98 16 Total: -1.00 -71.97 403.21 2.40 -69.57 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.23 Total: 32.20 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 7.85 Total: 14.22 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -6.05 Total: -132.36 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.66 Total: -30.51 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.97 2.40 -69.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216280361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.144 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds