Wall clock time and date at job start Tue Mar 31 2020 19:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46963 * 2 1 4 4 O 1.42903 * 109.47045 * 239.99790 * 2 1 3 5 5 C 1.42903 * 113.99655 * 90.00018 * 4 2 1 6 6 C 1.50698 * 109.47067 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99865 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00011 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00002 * 180.02562 * 8 6 5 10 10 C 1.53041 * 109.46241 * 275.03554 * 9 8 6 11 11 C 1.53197 * 109.30951 * 178.60153 * 10 9 8 12 12 N 1.46924 * 108.76434 * 54.65322 * 11 10 9 13 13 C 1.36940 * 120.62554 * 126.40867 * 12 11 10 14 14 H 1.07998 * 120.00318 * 331.81752 * 13 12 11 15 15 C 1.38815 * 119.99635 * 151.82518 * 13 12 11 16 16 N 1.31619 * 120.00229 * 343.06579 * 15 13 12 17 17 Si 1.86800 * 119.99901 * 163.06938 * 15 13 12 18 18 H 1.48508 * 109.47170 * 89.99654 * 17 15 13 19 19 H 1.48494 * 109.47579 * 209.99684 * 17 15 13 20 20 H 1.48507 * 109.46987 * 330.00043 * 17 15 13 21 21 C 1.46921 * 118.74057 * 306.37896 * 12 11 10 22 22 C 1.53039 * 109.45671 * 154.97485 * 9 8 6 23 23 C 1.50704 * 109.46878 * 120.00268 * 2 1 3 24 24 N 1.30499 * 125.65041 * 75.17324 * 23 2 1 25 25 C 1.34129 * 109.25324 * 180.29153 * 24 23 2 26 26 C 1.34663 * 108.02036 * 359.72820 * 25 24 23 27 27 N 1.35041 * 125.64642 * 254.99951 * 23 2 1 28 28 C 1.46497 * 126.40197 * 359.97385 * 27 23 2 29 29 H 1.08995 * 109.47239 * 299.99939 * 1 2 3 30 30 H 1.09003 * 109.46546 * 59.99609 * 1 2 3 31 31 H 1.08996 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47258 * 300.00188 * 5 4 2 33 33 H 1.09007 * 109.46662 * 60.00008 * 5 4 2 34 34 H 0.97003 * 120.00455 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.45959 * 35.00762 * 9 8 6 36 36 H 1.09002 * 109.49722 * 298.56391 * 10 9 8 37 37 H 1.08995 * 109.49872 * 58.66239 * 10 9 8 38 38 H 1.09000 * 109.59550 * 294.86028 * 11 10 9 39 39 H 1.08996 * 109.69838 * 174.50685 * 11 10 9 40 40 H 0.96996 * 119.99623 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.59237 * 293.82315 * 21 12 11 42 42 H 1.09006 * 109.70433 * 173.46603 * 21 12 11 43 43 H 1.08991 * 109.50452 * 301.34001 * 22 9 8 44 44 H 1.09004 * 109.49785 * 61.41105 * 22 9 8 45 45 H 1.08003 * 125.98681 * 179.72387 * 25 24 23 46 46 H 1.08003 * 126.59037 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.47126 * 269.71596 * 28 27 23 48 48 H 1.09000 * 109.47329 * 149.71310 * 28 27 23 49 49 H 1.09000 * 109.46784 * 29.71556 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4610 7 8 2.8752 -1.8223 -3.3394 8 7 2.9557 -0.0268 -4.6400 9 6 3.4425 -0.8154 -5.7747 10 6 4.9639 -0.9545 -5.6836 11 6 5.4653 -1.8089 -6.8522 12 7 4.9878 -1.2171 -8.1094 13 6 5.8658 -0.9149 -9.1159 14 1 6.8913 -0.6698 -8.8825 15 6 5.4374 -0.9236 -10.4363 16 7 4.3152 -1.5302 -10.7602 17 14 6.4539 -0.0745 -11.7535 18 1 7.4296 -1.0380 -12.3238 19 1 5.5575 0.4177 -12.8301 20 1 7.1832 1.0718 -11.1538 21 6 3.5505 -0.9563 -8.2663 22 6 3.0704 -0.1117 -7.0817 23 6 2.0323 -0.7105 1.2305 24 7 2.0300 -2.0020 1.4172 25 6 2.5443 -2.2752 2.6255 26 6 2.8836 -1.1090 3.2071 27 7 2.5624 -0.1162 2.3211 28 6 2.7525 1.3225 2.5212 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2539 0.6546 -2.5588 33 1 2.9320 0.9513 -2.0449 34 1 2.8163 0.9282 -4.7374 35 1 2.9854 -1.8048 -5.7521 36 1 5.4230 0.0329 -5.7314 37 1 5.2296 -1.4346 -4.7419 38 1 5.0785 -2.8234 -6.7557 39 1 6.5550 -1.8316 -6.8497 40 1 4.0162 -1.5366 -11.6829 41 1 3.0075 -1.9012 -8.2852 42 1 3.3745 -0.4151 -9.1960 43 1 1.9884 0.0081 -7.1352 44 1 3.5470 0.8680 -7.1160 45 1 2.6651 -3.2581 3.0564 46 1 3.3240 -0.9814 4.1850 47 1 3.7376 1.6131 2.1562 48 1 2.6755 1.5549 3.5834 49 1 1.9858 1.8700 1.9730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230152138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:48 Heat of formation + Delta-G solvation = 9.265631 kcal Electronic energy + Delta-G solvation = -28882.669345 eV Core-core repulsion = 24847.024583 eV Total energy + Delta-G solvation = -4035.644763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.39154 -39.81490 -38.26744 -37.09538 -34.38906 -34.36864 -32.62647 -32.11649 -30.22608 -29.59750 -28.97849 -27.75698 -27.39311 -24.85255 -23.83757 -22.29171 -21.96455 -21.58277 -20.36007 -20.05534 -19.29972 -17.82312 -17.15744 -17.02609 -16.42767 -16.25908 -15.93271 -15.52498 -15.05090 -14.78726 -14.38127 -14.27247 -13.88586 -13.72810 -13.58059 -13.52819 -13.27775 -13.17430 -13.04616 -12.87983 -12.74807 -12.42709 -12.34129 -12.24671 -11.45399 -11.38663 -11.11515 -10.84225 -10.70115 -10.48248 -10.26571 -10.16326 -10.03566 -10.02750 -9.89934 -9.83340 -9.65559 -9.41697 -8.70597 -8.69538 -8.44617 -6.66796 -5.78567 -3.20560 1.64562 2.24794 2.77338 2.79748 3.05746 3.37678 3.44619 3.46711 3.78317 4.03681 4.20660 4.35708 4.50256 4.54081 4.61833 4.71424 4.77708 4.84805 4.87916 4.99321 5.13357 5.24038 5.35136 5.35873 5.42344 5.44326 5.52146 5.61367 5.83645 5.89740 5.94073 6.09253 6.28782 6.34953 6.46392 6.53753 6.58746 6.60799 6.69154 6.81982 6.84176 6.95473 7.02333 7.32769 7.60595 7.72869 7.80847 7.90542 8.42762 8.45839 9.21860 9.85122 10.42452 11.30437 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.001883 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.141874 B =14868.672133 C =15032.411700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.072 0.928 4 O -0.333 6.333 5 C 0.040 3.960 6 C 0.509 3.491 7 O -0.514 6.514 8 N -0.724 5.724 9 C 0.153 3.847 10 C -0.139 4.139 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.174 3.826 22 C -0.146 4.146 23 C 0.201 3.799 24 N -0.456 5.456 25 C -0.028 4.028 26 C -0.057 4.057 27 N -0.459 5.459 28 C 0.068 3.932 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.395 0.605 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.056 0.944 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 11.263 27.537 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.116 3.884 3 H 0.090 0.910 4 O -0.250 6.250 5 C -0.040 4.040 6 C 0.293 3.707 7 O -0.388 6.388 8 N -0.377 5.377 9 C 0.050 3.950 10 C -0.179 4.179 11 C 0.020 3.980 12 N -0.316 5.316 13 C -0.381 4.381 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.047 3.953 22 C -0.186 4.186 23 C -0.061 4.061 24 N -0.174 5.174 25 C -0.177 4.177 26 C -0.189 4.189 27 N -0.143 5.143 28 C -0.075 4.075 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.228 0.772 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.559 9.717 26.898 29.581 hybrid contribution 0.779 1.835 0.020 1.994 sum -6.780 11.552 26.918 30.066 Atomic orbital electron populations 1.22245 0.93567 1.04495 1.02264 1.20026 0.94082 0.92975 0.81286 0.90994 1.88245 1.86346 1.32444 1.17953 1.22370 1.01195 0.93175 0.87252 1.20074 0.78555 0.88497 0.83575 1.90769 1.50452 1.14838 1.82698 1.46235 1.67907 1.12072 1.11437 1.21057 0.94622 0.95466 0.83878 1.22377 0.94876 1.01166 0.99532 1.20878 0.97543 0.93791 0.85782 1.44096 1.03412 1.70974 1.13087 1.19175 0.93465 1.40112 0.85342 0.91687 1.25062 0.97922 0.99529 0.97237 1.70026 1.23592 1.43646 1.17490 0.86304 0.79397 0.79560 0.81538 1.21391 1.21585 1.20541 1.20743 0.83698 0.95974 0.94843 1.22536 0.99603 1.00622 0.95798 1.22804 1.03310 0.89245 0.90723 1.70310 1.18715 1.11782 1.16602 1.22435 1.04454 0.98310 0.92461 1.22723 1.09851 0.88221 0.98113 1.45263 1.46630 1.07662 1.14745 1.22094 1.03496 0.77767 1.04157 0.91633 0.91255 0.90261 0.90186 0.90540 0.77200 0.89927 0.92363 0.92703 0.96107 0.92551 0.93605 0.96062 0.89014 0.92700 0.92184 0.81115 0.80660 0.90270 0.89283 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.51 37.16 0.35 -0.98 16 2 C 0.18 1.70 2.99 -27.88 -0.08 1.62 16 3 H 0.07 0.44 6.71 -51.93 -0.35 0.09 16 4 O -0.33 -4.54 9.50 -55.14 -0.52 -5.06 16 5 C 0.04 0.42 6.23 36.00 0.22 0.65 16 6 C 0.51 7.72 7.87 -10.99 -0.09 7.64 16 7 O -0.51 -10.58 16.16 -14.36 -0.23 -10.81 16 8 N -0.72 -10.00 5.08 -53.76 -0.27 -10.27 16 9 C 0.15 2.69 2.42 -67.89 -0.16 2.53 16 10 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 11 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 12 N -0.59 -14.94 2.99 -172.32 -0.52 -15.45 16 13 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 16 N -0.90 -26.15 11.19 55.49 0.62 -25.52 16 17 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 22 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 23 C 0.20 2.33 6.79 -155.42 -1.05 1.27 16 24 N -0.46 -6.58 11.25 -10.82 -0.12 -6.70 16 25 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 26 C -0.06 -0.47 11.58 -16.56 -0.19 -0.66 16 27 N -0.46 -3.84 3.15 -121.28 -0.38 -4.22 16 28 C 0.07 0.24 10.76 59.85 0.64 0.88 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.39 4.04 8.60 -40.82 -0.35 3.69 16 35 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 49 H 0.09 0.17 7.31 -51.93 -0.38 -0.21 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -37.93 399.52 -9.64 -47.57 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.06 Total: 0.86 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -1.14 Total: 7.06 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.67 Total: -62.17 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.76 Total: -15.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.93 -9.64 -47.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230152138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.832 kcal (2) G-P(sol) polarization free energy of solvation -37.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds