Wall clock time and date at job start Tue Mar 31 2020 19:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46963 * 2 1 4 4 O 1.42903 * 109.47045 * 239.99790 * 2 1 3 5 5 C 1.42903 * 113.99655 * 90.00018 * 4 2 1 6 6 C 1.50698 * 109.47067 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99865 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00011 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00002 * 180.02562 * 8 6 5 10 10 C 1.53041 * 109.46241 * 275.03554 * 9 8 6 11 11 C 1.53197 * 109.30951 * 178.60153 * 10 9 8 12 12 N 1.46924 * 108.76434 * 54.65322 * 11 10 9 13 13 C 1.36940 * 120.62554 * 126.40867 * 12 11 10 14 14 H 1.07998 * 120.00318 * 331.81752 * 13 12 11 15 15 C 1.38815 * 119.99635 * 151.82518 * 13 12 11 16 16 N 1.31619 * 120.00229 * 343.06579 * 15 13 12 17 17 Si 1.86800 * 119.99901 * 163.06938 * 15 13 12 18 18 H 1.48508 * 109.47170 * 89.99654 * 17 15 13 19 19 H 1.48494 * 109.47579 * 209.99684 * 17 15 13 20 20 H 1.48507 * 109.46987 * 330.00043 * 17 15 13 21 21 C 1.46921 * 118.74057 * 306.37896 * 12 11 10 22 22 C 1.53039 * 109.45671 * 154.97485 * 9 8 6 23 23 C 1.50704 * 109.46878 * 120.00268 * 2 1 3 24 24 N 1.30499 * 125.65041 * 75.17324 * 23 2 1 25 25 C 1.34129 * 109.25324 * 180.29153 * 24 23 2 26 26 C 1.34663 * 108.02036 * 359.72820 * 25 24 23 27 27 N 1.35041 * 125.64642 * 254.99951 * 23 2 1 28 28 C 1.46497 * 126.40197 * 359.97385 * 27 23 2 29 29 H 1.08995 * 109.47239 * 299.99939 * 1 2 3 30 30 H 1.09003 * 109.46546 * 59.99609 * 1 2 3 31 31 H 1.08996 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47258 * 300.00188 * 5 4 2 33 33 H 1.09007 * 109.46662 * 60.00008 * 5 4 2 34 34 H 0.97003 * 120.00455 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.45959 * 35.00762 * 9 8 6 36 36 H 1.09002 * 109.49722 * 298.56391 * 10 9 8 37 37 H 1.08995 * 109.49872 * 58.66239 * 10 9 8 38 38 H 1.09000 * 109.59550 * 294.86028 * 11 10 9 39 39 H 1.08996 * 109.69838 * 174.50685 * 11 10 9 40 40 H 0.96996 * 119.99623 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.59237 * 293.82315 * 21 12 11 42 42 H 1.09006 * 109.70433 * 173.46603 * 21 12 11 43 43 H 1.08991 * 109.50452 * 301.34001 * 22 9 8 44 44 H 1.09004 * 109.49785 * 61.41105 * 22 9 8 45 45 H 1.08003 * 125.98681 * 179.72387 * 25 24 23 46 46 H 1.08003 * 126.59037 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.47126 * 269.71596 * 28 27 23 48 48 H 1.09000 * 109.47329 * 149.71310 * 28 27 23 49 49 H 1.09000 * 109.46784 * 29.71556 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4610 7 8 2.8752 -1.8223 -3.3394 8 7 2.9557 -0.0268 -4.6400 9 6 3.4425 -0.8154 -5.7747 10 6 4.9639 -0.9545 -5.6836 11 6 5.4653 -1.8089 -6.8522 12 7 4.9878 -1.2171 -8.1094 13 6 5.8658 -0.9149 -9.1159 14 1 6.8913 -0.6698 -8.8825 15 6 5.4374 -0.9236 -10.4363 16 7 4.3152 -1.5302 -10.7602 17 14 6.4539 -0.0745 -11.7535 18 1 7.4296 -1.0380 -12.3238 19 1 5.5575 0.4177 -12.8301 20 1 7.1832 1.0718 -11.1538 21 6 3.5505 -0.9563 -8.2663 22 6 3.0704 -0.1117 -7.0817 23 6 2.0323 -0.7105 1.2305 24 7 2.0300 -2.0020 1.4172 25 6 2.5443 -2.2752 2.6255 26 6 2.8836 -1.1090 3.2071 27 7 2.5624 -0.1162 2.3211 28 6 2.7525 1.3225 2.5212 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2539 0.6546 -2.5588 33 1 2.9320 0.9513 -2.0449 34 1 2.8163 0.9282 -4.7374 35 1 2.9854 -1.8048 -5.7521 36 1 5.4230 0.0329 -5.7314 37 1 5.2296 -1.4346 -4.7419 38 1 5.0785 -2.8234 -6.7557 39 1 6.5550 -1.8316 -6.8497 40 1 4.0162 -1.5366 -11.6829 41 1 3.0075 -1.9012 -8.2852 42 1 3.3745 -0.4151 -9.1960 43 1 1.9884 0.0081 -7.1352 44 1 3.5470 0.8680 -7.1160 45 1 2.6651 -3.2581 3.0564 46 1 3.3240 -0.9814 4.1850 47 1 3.7376 1.6131 2.1562 48 1 2.6755 1.5549 3.5834 49 1 1.9858 1.8700 1.9730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230152138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:47 Heat of formation + Delta-G solvation = -17.384288 kcal Electronic energy + Delta-G solvation = -28883.824973 eV Core-core repulsion = 24847.024583 eV Total energy + Delta-G solvation = -4036.800390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.05175 -41.03510 -39.36360 -38.53402 -35.99015 -34.95229 -33.99448 -33.25607 -31.88363 -31.33175 -29.63004 -28.85125 -27.80422 -26.67377 -24.55345 -23.97482 -23.59295 -22.29041 -21.54694 -21.00248 -20.75429 -18.97002 -18.41332 -17.94441 -17.61165 -17.06383 -16.97012 -16.66411 -16.49195 -15.86903 -15.52051 -15.39527 -15.29671 -15.11558 -14.81670 -14.49857 -14.37971 -14.23143 -14.09816 -13.78657 -13.67735 -13.44962 -13.24911 -13.15989 -13.01741 -12.94515 -12.61461 -12.52089 -12.23098 -12.04149 -12.01761 -11.88575 -11.56302 -11.36171 -10.92525 -10.79445 -10.77200 -10.56139 -10.54919 -10.01721 -9.38710 -8.71398 -7.87929 -5.34013 0.99367 1.48796 1.49540 1.59999 1.62514 1.63338 2.01061 2.20697 2.52124 3.01208 3.28068 3.39704 3.62439 3.69756 3.86325 3.95124 3.96444 4.03795 4.07551 4.14596 4.19310 4.32189 4.35396 4.43016 4.45535 4.55228 4.63704 4.67404 4.69925 4.75608 4.81544 4.84026 4.85116 5.02402 5.04265 5.15010 5.22640 5.27983 5.32228 5.46357 5.53874 5.64361 5.71018 5.81455 6.01349 6.26186 6.38605 6.64943 7.14042 7.20786 7.32664 7.83094 8.36691 9.19329 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.001883 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.141874 B =14868.672133 C =15032.411700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.173 3.827 3 H 0.115 0.885 4 O -0.380 6.380 5 C 0.046 3.954 6 C 0.504 3.496 7 O -0.578 6.578 8 N -0.706 5.706 9 C 0.163 3.837 10 C -0.123 4.123 11 C 0.143 3.857 12 N -0.609 5.609 13 C -0.264 4.264 14 H 0.068 0.932 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.971 3.029 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.267 1.267 21 C 0.177 3.823 22 C -0.126 4.126 23 C 0.180 3.820 24 N -0.520 5.520 25 C -0.071 4.071 26 C -0.038 4.038 27 N -0.453 5.453 28 C 0.056 3.944 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.418 0.582 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.002 0.998 39 H 0.058 0.942 40 H 0.251 0.749 41 H -0.009 1.009 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.176 0.824 46 H 0.215 0.785 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.187 15.567 29.452 34.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.114 3.886 3 H 0.133 0.867 4 O -0.298 6.298 5 C -0.033 4.033 6 C 0.291 3.709 7 O -0.457 6.457 8 N -0.359 5.359 9 C 0.058 3.942 10 C -0.163 4.163 11 C 0.017 3.983 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.085 0.915 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.799 3.201 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.192 1.192 21 C 0.051 3.949 22 C -0.165 4.165 23 C -0.083 4.083 24 N -0.240 5.240 25 C -0.218 4.218 26 C -0.172 4.172 27 N -0.137 5.137 28 C -0.084 4.084 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.256 0.744 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.020 0.980 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.009 0.991 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.193 0.807 46 H 0.232 0.768 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.350 14.105 28.847 32.941 hybrid contribution 0.734 0.431 -0.499 0.986 sum -6.616 14.536 28.348 32.537 Atomic orbital electron populations 1.22215 0.92824 1.02764 1.04222 1.20348 0.94647 0.94309 0.79277 0.86729 1.88194 1.86967 1.34974 1.19654 1.22478 1.04000 0.92141 0.84638 1.21046 0.77108 0.88103 0.84675 1.90752 1.53211 1.17954 1.83785 1.45876 1.67048 1.12891 1.10110 1.20623 0.93711 0.94682 0.85212 1.22158 0.95668 1.00923 0.97576 1.20960 0.97689 0.93533 0.86097 1.44359 1.03807 1.71474 1.13580 1.19514 0.94008 1.39677 0.86176 0.91455 1.25859 0.99207 1.00318 0.99283 1.70193 1.25318 1.45069 1.17633 0.85232 0.77725 0.78576 0.78598 1.21490 1.21690 1.19198 1.20589 0.82982 0.95141 0.96235 1.22242 1.01088 0.99844 0.93371 1.23183 1.03916 0.88972 0.92216 1.70196 1.20857 1.14329 1.18616 1.22767 1.06443 1.00044 0.92579 1.23272 1.07637 0.87316 0.98946 1.45542 1.45055 1.09509 1.13571 1.22509 1.04750 0.74874 1.06277 0.89623 0.89219 0.93836 0.86205 0.86583 0.74425 0.93105 0.90939 0.92799 0.97996 0.92381 0.93987 0.99101 0.91619 0.90224 0.90573 0.80660 0.76837 0.89310 0.86944 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.51 71.98 0.68 -1.58 16 2 C 0.17 2.93 2.99 29.85 0.09 3.02 16 3 H 0.12 0.85 6.71 -2.39 -0.02 0.83 16 4 O -0.38 -9.83 9.50 -129.94 -1.23 -11.06 16 5 C 0.05 0.81 6.23 71.24 0.44 1.26 16 6 C 0.50 14.50 7.87 87.66 0.69 15.19 16 7 O -0.58 -24.37 16.16 16.00 0.26 -24.11 16 8 N -0.71 -17.71 5.08 -442.39 -2.25 -19.96 16 9 C 0.16 5.61 2.42 45.02 0.11 5.72 16 10 C -0.12 -4.53 5.65 30.67 0.17 -4.36 16 11 C 0.14 6.45 6.52 86.36 0.56 7.01 16 12 N -0.61 -31.21 2.99 -699.09 -2.09 -33.30 16 13 C -0.26 -14.58 9.58 84.03 0.81 -13.78 16 14 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 15 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 16 N -0.94 -55.58 11.19 21.65 0.24 -55.34 16 17 Si 0.97 44.52 29.59 68.60 2.03 46.55 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C 0.18 8.52 5.30 86.37 0.46 8.97 16 22 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 23 C 0.18 3.99 6.79 138.13 0.94 4.93 16 24 N -0.52 -15.63 11.25 -188.13 -2.12 -17.75 16 25 C -0.07 -1.62 11.87 83.52 0.99 -0.63 16 26 C -0.04 -0.57 11.58 83.08 0.96 0.40 16 27 N -0.45 -6.50 3.15 -537.62 -1.69 -8.20 16 28 C 0.06 0.16 10.76 127.77 1.37 1.54 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.84 7.87 -2.39 -0.02 0.82 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 1.15 7.87 -2.39 -0.02 1.13 16 33 H 0.12 1.13 8.09 -2.38 -0.02 1.11 16 34 H 0.42 6.75 8.60 -92.71 -0.80 5.95 16 35 H 0.05 2.11 7.58 -2.38 -0.02 2.10 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.07 3.50 6.07 -2.38 -0.01 3.49 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 45 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 47 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.11 -0.10 7.31 -2.39 -0.02 -0.12 16 Total: -1.00 -90.18 399.52 2.16 -88.02 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.15 Total: 14.15 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 8.87 Total: 20.99 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -7.91 Total: -134.55 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.98 Total: -35.17 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -90.18 2.16 -88.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230152138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.634 kcal (2) G-P(sol) polarization free energy of solvation -90.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds