Wall clock time and date at job start Tue Mar 31 2020 19:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00096 * 2 1 4 4 O 1.20833 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00070 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47013 * 299.99424 * 5 3 2 7 7 C 1.52995 * 109.47250 * 59.99693 * 5 3 2 8 8 C 1.50700 * 109.47058 * 180.02562 * 5 3 2 9 9 C 1.38169 * 120.02505 * 299.99649 * 8 5 3 10 10 C 1.38243 * 120.05284 * 180.02562 * 9 8 5 11 11 C 1.38289 * 120.11661 * 359.97438 * 10 9 8 12 12 C 1.38122 * 120.04980 * 0.02562 * 11 10 9 13 13 C 1.38714 * 120.03138 * 119.72227 * 8 5 3 14 14 O 1.35898 * 120.05256 * 0.02562 * 13 8 5 15 15 C 1.42895 * 116.99809 * 183.97126 * 14 13 8 16 16 H 1.08996 * 109.47327 * 32.76783 * 15 14 13 17 17 C 1.50695 * 109.47141 * 272.76163 * 15 14 13 18 18 H 1.08005 * 120.00092 * 119.99944 * 17 15 14 19 19 C 1.37878 * 120.00527 * 300.00196 * 17 15 14 20 20 N 1.31523 * 119.99617 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00609 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47239 * 89.99893 * 21 19 17 23 23 H 1.48496 * 109.47220 * 210.00061 * 21 19 17 24 24 H 1.48504 * 109.46664 * 329.99982 * 21 19 17 25 25 C 1.53003 * 109.47070 * 152.76183 * 15 14 13 26 26 N 1.46894 * 109.47315 * 294.71853 * 25 15 14 27 27 C 1.46897 * 109.47236 * 63.40613 * 26 25 15 28 28 C 1.46906 * 109.47169 * 183.40349 * 26 25 15 29 29 C 1.46897 * 109.47121 * 303.40656 * 26 25 15 30 30 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47400 * 299.99728 * 1 2 3 32 32 H 1.08997 * 109.47494 * 60.00166 * 1 2 3 33 33 H 1.09004 * 109.47345 * 179.97438 * 7 5 3 34 34 H 1.08998 * 109.47638 * 300.00516 * 7 5 3 35 35 H 1.09006 * 109.47027 * 60.00324 * 7 5 3 36 36 H 1.07996 * 119.97253 * 359.97438 * 9 8 5 37 37 H 1.08005 * 119.94620 * 179.97438 * 10 9 8 38 38 H 1.07994 * 119.97688 * 179.97438 * 11 10 9 39 39 H 1.08010 * 120.02473 * 179.97438 * 12 11 10 40 40 H 0.96996 * 120.00097 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47293 * 54.72188 * 25 15 14 42 42 H 1.09002 * 109.46814 * 174.71495 * 25 15 14 43 43 H 1.09005 * 109.47174 * 51.28619 * 27 26 25 44 44 H 1.09000 * 109.47771 * 171.28628 * 27 26 25 45 45 H 1.09003 * 109.46924 * 291.28770 * 27 26 25 46 46 H 1.08998 * 109.46947 * 59.99972 * 28 26 25 47 47 H 1.08998 * 109.47037 * 179.97438 * 28 26 25 48 48 H 1.09000 * 109.47289 * 299.99974 * 28 26 25 49 49 H 1.08997 * 109.47254 * 59.99912 * 29 26 25 50 50 H 1.09007 * 109.47341 * 180.02562 * 29 26 25 51 51 H 1.09007 * 109.46899 * 299.99363 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 3.9936 2.7200 0.0002 9 6 3.6157 3.5532 -1.0352 10 6 4.0077 4.8789 -1.0353 11 6 4.7784 5.3746 0.0004 12 6 5.1588 4.5457 1.0376 13 6 4.7619 3.2162 1.0431 14 8 5.1306 2.3999 2.0651 15 6 5.8465 2.9983 3.1474 16 1 5.5054 4.0242 3.2855 17 6 7.3210 2.9966 2.8361 18 1 7.8625 3.9295 2.7819 19 6 7.9788 1.8042 2.6205 20 7 7.3195 0.6681 2.6870 21 14 9.8064 1.8022 2.2341 22 1 10.5797 1.7139 3.4987 23 1 10.1291 0.6355 1.3740 24 1 10.1631 3.0557 1.5222 25 6 5.5947 2.2005 4.4284 26 7 4.1779 2.3071 4.8013 27 6 3.3486 1.6956 3.7543 28 6 3.9527 1.6093 6.0742 29 6 3.8156 3.7231 4.9482 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 5.2014 0.6389 -1.2508 34 1 3.8038 -0.4638 -1.2503 35 1 3.7228 1.0758 -2.1399 36 1 3.0142 3.1683 -1.8454 37 1 3.7117 5.5286 -1.8457 38 1 5.0838 6.4105 -0.0022 39 1 5.7611 4.9333 1.8461 40 1 7.7823 -0.1708 2.5357 41 1 5.8485 1.1538 4.2604 42 1 6.2132 2.5996 5.2324 43 1 3.7186 0.6936 3.5366 44 1 2.3160 1.6349 4.0977 45 1 3.3960 2.3045 2.8514 46 1 4.5680 2.0631 6.8511 47 1 2.9015 1.6889 6.3511 48 1 4.2215 0.5586 5.9651 49 1 3.9827 4.2409 4.0037 50 1 2.7643 3.8023 5.2253 51 1 4.4309 4.1769 5.7252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234818589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:17 Heat of formation + Delta-G solvation = 10.055508 kcal Electronic energy + Delta-G solvation = -32405.204046 eV Core-core repulsion = 28389.070956 eV Total energy + Delta-G solvation = -4016.133090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40084 -41.65447 -40.48068 -38.19165 -37.28494 -35.21307 -34.64960 -31.84356 -30.78650 -30.40773 -30.27220 -29.78458 -28.60328 -27.85143 -25.62650 -25.13520 -23.94139 -22.96461 -22.05684 -20.98818 -19.23694 -18.94980 -18.56824 -18.38200 -18.18426 -17.63694 -17.52887 -17.18134 -16.51838 -16.09831 -16.02643 -15.48825 -15.29336 -14.96521 -14.76241 -14.66524 -14.50781 -14.27602 -14.21702 -14.13094 -14.02428 -13.88094 -13.75850 -13.52075 -13.43971 -13.27627 -12.97077 -12.86419 -12.67339 -12.57080 -12.43286 -12.19524 -11.88747 -11.78421 -11.71545 -11.60840 -11.14653 -11.04382 -10.79992 -10.19480 -9.49789 -8.65200 -7.80426 -6.01517 0.29005 0.62004 0.88786 1.30989 1.86411 2.07378 2.23352 2.24411 2.26236 2.30759 2.35531 2.69624 2.98748 3.12665 3.14782 3.18874 3.39411 3.48618 3.61165 3.64799 3.72386 3.73514 3.74232 3.79156 3.92134 4.09619 4.13608 4.17262 4.19362 4.23034 4.23978 4.36679 4.39004 4.41693 4.50461 4.58364 4.74082 4.79193 4.95633 5.00717 5.03558 5.19462 5.33498 5.34511 5.50879 5.75029 5.79684 5.92367 6.07668 6.17013 6.23497 6.83962 6.87658 7.19498 7.83277 9.22083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.461 3.539 4 O -0.501 6.501 5 C -0.030 4.030 6 H 0.125 0.875 7 C -0.140 4.140 8 C -0.127 4.127 9 C -0.051 4.051 10 C -0.169 4.169 11 C -0.076 4.076 12 C -0.206 4.206 13 C 0.163 3.837 14 O -0.306 6.306 15 C 0.193 3.807 16 H 0.048 0.952 17 C -0.562 4.562 18 H 0.078 0.922 19 C 0.094 3.906 20 N -0.861 5.861 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.003 4.003 26 N -0.271 5.271 27 C -0.045 4.045 28 C -0.041 4.041 29 C -0.047 4.047 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.160 0.840 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.098 0.902 45 H 0.132 0.868 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.110 0.890 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 0.449 9.983 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.303 3.697 4 O -0.387 6.387 5 C -0.049 4.049 6 H 0.142 0.858 7 C -0.197 4.197 8 C -0.128 4.128 9 C -0.070 4.070 10 C -0.188 4.188 11 C -0.094 4.094 12 C -0.224 4.224 13 C 0.116 3.884 14 O -0.220 6.220 15 C 0.138 3.862 16 H 0.066 0.934 17 C -0.598 4.598 18 H 0.096 0.904 19 C -0.116 4.116 20 N -0.495 5.495 21 Si 0.728 3.272 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.121 4.121 26 N 0.070 4.930 27 C -0.186 4.186 28 C -0.182 4.182 29 C -0.189 4.189 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.178 0.822 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.150 0.850 46 H 0.132 0.868 47 H 0.127 0.873 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.128 0.872 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.447 0.313 10.017 15.214 hybrid contribution 0.933 0.144 -0.298 0.990 sum -10.513 0.457 9.719 14.325 Atomic orbital electron populations 1.23272 0.76425 1.03778 1.02480 1.86541 1.23269 1.33562 1.84089 1.24030 0.92191 0.81257 0.72197 1.90682 1.67061 1.36238 1.44753 1.19735 0.86253 0.95246 1.03637 0.85751 1.21777 1.02764 1.00338 0.94812 1.18529 1.04400 0.93931 0.95966 1.20672 0.96535 0.93275 0.96471 1.20925 1.02177 0.95671 0.99977 1.20983 0.95830 0.99326 0.93311 1.21256 1.05410 0.93577 1.02175 1.18586 0.92207 0.89061 0.88500 1.86229 1.69082 1.37882 1.28777 1.20338 0.94009 0.90363 0.81451 0.93436 1.21191 0.91131 0.94501 1.53001 0.90419 1.24998 0.99889 0.95042 0.91704 1.69599 1.37127 0.98353 1.44404 0.86345 0.82428 0.79117 0.79280 1.19774 1.20220 1.19104 1.24915 0.74354 1.11998 1.00854 1.46376 1.18191 1.13997 1.14417 1.24385 0.95936 1.04859 0.93446 1.24008 1.06839 1.02099 0.85304 1.24074 1.05689 0.80513 1.08654 0.88030 0.92105 0.91832 0.90315 0.91128 0.92294 0.86449 0.86370 0.86277 0.84933 0.91108 0.82248 0.85932 0.86052 0.88360 0.85037 0.86785 0.87259 0.86455 0.86344 0.87165 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.36 -0.36 10.47 -39.25 -0.41 -0.77 16 3 C 0.46 0.90 7.13 36.00 0.26 1.15 16 4 O -0.50 -2.03 14.86 -18.76 -0.28 -2.31 16 5 C -0.03 -0.05 2.97 -92.93 -0.28 -0.33 16 6 H 0.12 0.16 6.99 -51.93 -0.36 -0.20 16 7 C -0.14 -0.22 8.94 37.15 0.33 0.11 16 8 C -0.13 -0.39 4.41 -104.47 -0.46 -0.85 16 9 C -0.05 -0.18 7.93 -39.60 -0.31 -0.49 16 10 C -0.17 -0.51 10.04 -39.56 -0.40 -0.91 16 11 C -0.08 -0.20 10.04 -39.61 -0.40 -0.60 16 12 C -0.21 -0.59 8.78 -39.43 -0.35 -0.93 16 13 C 0.16 0.47 5.89 -39.22 -0.23 0.24 16 14 O -0.31 -0.49 4.92 -19.42 -0.10 -0.58 16 15 C 0.19 0.08 1.36 -27.88 -0.04 0.05 16 16 H 0.05 -0.07 3.90 -51.93 -0.20 -0.27 16 17 C -0.56 -3.40 8.30 -34.44 -0.29 -3.69 16 18 H 0.08 0.58 7.81 -52.48 -0.41 0.17 16 19 C 0.09 0.74 5.24 -17.82 -0.09 0.65 16 20 N -0.86 -6.47 10.93 55.43 0.61 -5.86 16 21 Si 0.90 7.73 29.54 -169.99 -5.02 2.71 16 22 H -0.27 -2.41 7.11 56.52 0.40 -2.01 16 23 H -0.28 -2.74 7.11 56.52 0.40 -2.34 16 24 H -0.27 -2.59 7.11 56.52 0.40 -2.19 16 25 C 0.00 0.01 3.54 -3.83 -0.01 0.00 16 26 N -0.27 2.54 0.05 -395.62 -0.02 2.52 16 27 C -0.05 0.35 7.12 60.06 0.43 0.77 16 28 C -0.04 0.49 8.00 60.07 0.48 0.97 16 29 C -0.05 0.50 7.57 60.06 0.45 0.95 16 30 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 31 H 0.06 -0.12 8.13 -51.93 -0.42 -0.54 16 32 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.05 8.11 -51.93 -0.42 -0.37 16 35 H 0.06 0.08 7.39 -51.93 -0.38 -0.30 16 36 H 0.12 0.34 7.52 -52.49 -0.39 -0.05 16 37 H 0.12 0.18 8.06 -52.48 -0.42 -0.24 16 38 H 0.12 0.11 8.06 -52.49 -0.42 -0.32 16 39 H 0.13 0.29 5.74 -52.48 -0.30 -0.01 16 40 H 0.28 2.32 8.31 -40.82 -0.34 1.98 16 41 H 0.16 -0.22 6.10 -51.93 -0.32 -0.54 16 42 H 0.12 -0.64 8.11 -51.93 -0.42 -1.06 16 43 H 0.12 -0.81 7.97 -51.93 -0.41 -1.22 16 44 H 0.10 -1.00 8.02 -51.93 -0.42 -1.42 16 45 H 0.13 -0.61 4.94 -51.93 -0.26 -0.87 16 46 H 0.11 -1.48 8.13 -51.93 -0.42 -1.90 16 47 H 0.11 -1.51 8.08 -51.93 -0.42 -1.93 16 48 H 0.12 -1.37 8.14 -51.93 -0.42 -1.79 16 49 H 0.12 -0.99 5.91 -51.93 -0.31 -1.29 16 50 H 0.11 -1.37 8.14 -51.92 -0.42 -1.80 16 51 H 0.12 -1.38 8.14 -51.93 -0.42 -1.80 16 LS Contribution 396.02 15.07 5.97 5.97 Total: 0.00 -16.50 396.02 -7.48 -23.98 By element: Atomic # 1 Polarization: -15.40 SS G_CDS: -8.39 Total: -23.79 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.16 Total: -1.87 kcal Atomic # 7 Polarization: -3.93 SS G_CDS: 0.59 Total: -3.34 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -0.79 Total: -3.66 kcal Atomic # 14 Polarization: 7.73 SS G_CDS: -5.02 Total: 2.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -16.50 -7.48 -23.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234818589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.035 kcal (2) G-P(sol) polarization free energy of solvation -16.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds