Wall clock time and date at job start Tue Mar 31 2020 19:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00096 * 2 1 4 4 O 1.20833 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00070 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47013 * 299.99424 * 5 3 2 7 7 C 1.52995 * 109.47250 * 59.99693 * 5 3 2 8 8 C 1.50700 * 109.47058 * 180.02562 * 5 3 2 9 9 C 1.38169 * 120.02505 * 299.99649 * 8 5 3 10 10 C 1.38243 * 120.05284 * 180.02562 * 9 8 5 11 11 C 1.38289 * 120.11661 * 359.97438 * 10 9 8 12 12 C 1.38122 * 120.04980 * 0.02562 * 11 10 9 13 13 C 1.38714 * 120.03138 * 119.72227 * 8 5 3 14 14 O 1.35898 * 120.05256 * 0.02562 * 13 8 5 15 15 C 1.42895 * 116.99809 * 183.97126 * 14 13 8 16 16 H 1.08996 * 109.47327 * 32.76783 * 15 14 13 17 17 C 1.50695 * 109.47141 * 272.76163 * 15 14 13 18 18 H 1.08005 * 120.00092 * 119.99944 * 17 15 14 19 19 C 1.37878 * 120.00527 * 300.00196 * 17 15 14 20 20 N 1.31523 * 119.99617 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00609 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47239 * 89.99893 * 21 19 17 23 23 H 1.48496 * 109.47220 * 210.00061 * 21 19 17 24 24 H 1.48504 * 109.46664 * 329.99982 * 21 19 17 25 25 C 1.53003 * 109.47070 * 152.76183 * 15 14 13 26 26 N 1.46894 * 109.47315 * 294.71853 * 25 15 14 27 27 C 1.46897 * 109.47236 * 63.40613 * 26 25 15 28 28 C 1.46906 * 109.47169 * 183.40349 * 26 25 15 29 29 C 1.46897 * 109.47121 * 303.40656 * 26 25 15 30 30 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47400 * 299.99728 * 1 2 3 32 32 H 1.08997 * 109.47494 * 60.00166 * 1 2 3 33 33 H 1.09004 * 109.47345 * 179.97438 * 7 5 3 34 34 H 1.08998 * 109.47638 * 300.00516 * 7 5 3 35 35 H 1.09006 * 109.47027 * 60.00324 * 7 5 3 36 36 H 1.07996 * 119.97253 * 359.97438 * 9 8 5 37 37 H 1.08005 * 119.94620 * 179.97438 * 10 9 8 38 38 H 1.07994 * 119.97688 * 179.97438 * 11 10 9 39 39 H 1.08010 * 120.02473 * 179.97438 * 12 11 10 40 40 H 0.96996 * 120.00097 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47293 * 54.72188 * 25 15 14 42 42 H 1.09002 * 109.46814 * 174.71495 * 25 15 14 43 43 H 1.09005 * 109.47174 * 51.28619 * 27 26 25 44 44 H 1.09000 * 109.47771 * 171.28628 * 27 26 25 45 45 H 1.09003 * 109.46924 * 291.28770 * 27 26 25 46 46 H 1.08998 * 109.46947 * 59.99972 * 28 26 25 47 47 H 1.08998 * 109.47037 * 179.97438 * 28 26 25 48 48 H 1.09000 * 109.47289 * 299.99974 * 28 26 25 49 49 H 1.08997 * 109.47254 * 59.99912 * 29 26 25 50 50 H 1.09007 * 109.47341 * 180.02562 * 29 26 25 51 51 H 1.09007 * 109.46899 * 299.99363 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 3.9936 2.7200 0.0002 9 6 3.6157 3.5532 -1.0352 10 6 4.0077 4.8789 -1.0353 11 6 4.7784 5.3746 0.0004 12 6 5.1588 4.5457 1.0376 13 6 4.7619 3.2162 1.0431 14 8 5.1306 2.3999 2.0651 15 6 5.8465 2.9983 3.1474 16 1 5.5054 4.0242 3.2855 17 6 7.3210 2.9966 2.8361 18 1 7.8625 3.9295 2.7819 19 6 7.9788 1.8042 2.6205 20 7 7.3195 0.6681 2.6870 21 14 9.8064 1.8022 2.2341 22 1 10.5797 1.7139 3.4987 23 1 10.1291 0.6355 1.3740 24 1 10.1631 3.0557 1.5222 25 6 5.5947 2.2005 4.4284 26 7 4.1779 2.3071 4.8013 27 6 3.3486 1.6956 3.7543 28 6 3.9527 1.6093 6.0742 29 6 3.8156 3.7231 4.9482 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 5.2014 0.6389 -1.2508 34 1 3.8038 -0.4638 -1.2503 35 1 3.7228 1.0758 -2.1399 36 1 3.0142 3.1683 -1.8454 37 1 3.7117 5.5286 -1.8457 38 1 5.0838 6.4105 -0.0022 39 1 5.7611 4.9333 1.8461 40 1 7.7823 -0.1708 2.5357 41 1 5.8485 1.1538 4.2604 42 1 6.2132 2.5996 5.2324 43 1 3.7186 0.6936 3.5366 44 1 2.3160 1.6349 4.0977 45 1 3.3960 2.3045 2.8514 46 1 4.5680 2.0631 6.8511 47 1 2.9015 1.6889 6.3511 48 1 4.2215 0.5586 5.9651 49 1 3.9827 4.2409 4.0037 50 1 2.7643 3.8023 5.2253 51 1 4.4309 4.1769 5.7252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234818589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:16 Heat of formation + Delta-G solvation = 9.821884 kcal Electronic energy + Delta-G solvation = -32405.214177 eV Core-core repulsion = 28389.070956 eV Total energy + Delta-G solvation = -4016.143221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.84868 -41.76649 -40.56894 -38.29665 -37.41632 -35.40705 -35.02425 -31.86643 -30.93814 -30.01667 -29.54444 -29.46424 -28.56734 -27.86995 -25.76234 -25.03391 -23.78665 -23.07664 -22.08792 -21.11625 -19.41677 -18.69927 -18.49644 -17.92255 -17.74887 -17.72601 -17.50795 -17.22707 -16.65964 -16.40166 -16.14463 -15.58206 -15.40956 -14.81781 -14.64028 -14.49816 -14.29982 -14.20796 -14.03040 -13.76742 -13.56098 -13.32782 -13.29263 -13.24984 -13.20705 -13.14834 -13.00165 -12.93657 -12.90106 -12.78578 -12.72154 -12.68614 -12.29055 -12.03750 -11.92979 -11.75782 -11.32265 -11.18771 -11.09926 -10.80141 -9.71276 -8.86123 -8.36189 -6.52331 0.41617 0.67199 0.98405 1.16346 1.33508 1.46065 1.52706 1.80398 2.29719 2.47154 2.84594 2.94020 3.04666 3.09961 3.25814 3.57894 3.80820 3.91935 4.04044 4.07590 4.16722 4.20476 4.24004 4.25365 4.28712 4.31022 4.33629 4.34621 4.36874 4.46319 4.54128 4.57717 4.58882 4.67948 4.72990 4.73910 4.79517 4.80983 4.82031 4.90442 5.01029 5.13804 5.18054 5.23195 5.39882 5.56149 5.59627 5.61455 5.70914 5.80214 6.00195 6.45539 6.74092 6.87900 7.29948 8.61739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.523 6.523 5 C -0.025 4.025 6 H 0.127 0.873 7 C -0.138 4.138 8 C -0.135 4.135 9 C -0.064 4.064 10 C -0.180 4.180 11 C -0.083 4.083 12 C -0.214 4.214 13 C 0.156 3.844 14 O -0.300 6.300 15 C 0.187 3.813 16 H 0.069 0.931 17 C -0.563 4.563 18 H 0.058 0.942 19 C 0.079 3.921 20 N -0.860 5.860 21 Si 0.913 3.087 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.287 1.287 25 C 0.015 3.985 26 N -0.258 5.258 27 C -0.045 4.045 28 C -0.043 4.043 29 C -0.053 4.053 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.269 0.731 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.129 0.871 47 H 0.137 0.863 48 H 0.112 0.888 49 H 0.094 0.906 50 H 0.139 0.861 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 0.537 11.971 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.314 3.686 4 O -0.411 6.411 5 C -0.043 4.043 6 H 0.145 0.855 7 C -0.195 4.195 8 C -0.136 4.136 9 C -0.082 4.082 10 C -0.198 4.198 11 C -0.101 4.101 12 C -0.233 4.233 13 C 0.110 3.890 14 O -0.213 6.213 15 C 0.133 3.867 16 H 0.086 0.914 17 C -0.601 4.601 18 H 0.076 0.924 19 C -0.129 4.129 20 N -0.495 5.495 21 Si 0.742 3.258 22 H -0.201 1.201 23 H -0.225 1.225 24 H -0.212 1.212 25 C -0.105 4.105 26 N 0.085 4.915 27 C -0.187 4.187 28 C -0.184 4.184 29 C -0.194 4.194 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.150 0.850 45 H 0.120 0.880 46 H 0.147 0.853 47 H 0.156 0.844 48 H 0.131 0.869 49 H 0.113 0.887 50 H 0.157 0.843 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.752 0.391 12.020 18.269 hybrid contribution 1.608 0.168 -0.932 1.866 sum -12.144 0.559 11.088 16.454 Atomic orbital electron populations 1.23524 0.74954 1.05471 1.02575 1.86529 1.24725 1.32838 1.83700 1.23896 0.91998 0.81204 0.71478 1.90669 1.67484 1.37005 1.45972 1.19665 0.86432 0.94577 1.03674 0.85517 1.21753 1.01830 1.01009 0.94921 1.18675 1.04450 0.94548 0.95936 1.20800 0.96917 0.93721 0.96768 1.21141 1.02348 0.95813 1.00547 1.21214 0.95621 1.00180 0.93084 1.21385 1.05629 0.93756 1.02519 1.18716 0.92200 0.89276 0.88846 1.86266 1.68767 1.37541 1.28771 1.20424 0.90808 0.92935 0.82542 0.91375 1.21390 0.94147 0.92856 1.51670 0.92424 1.25028 0.98761 0.96000 0.93130 1.69658 1.36056 0.97697 1.46134 0.86281 0.84332 0.76914 0.78247 1.20100 1.22498 1.21246 1.24201 0.77897 1.09425 0.98995 1.45995 1.14894 1.15280 1.15375 1.24299 0.97880 1.03464 0.93073 1.24229 1.09016 1.01593 0.83523 1.24260 1.08021 0.79122 1.08027 0.85574 0.91337 0.92463 0.91672 0.90112 0.92172 0.86463 0.85215 0.84673 0.84586 0.92108 0.84582 0.84309 0.87320 0.85045 0.88006 0.85299 0.84441 0.86926 0.88715 0.84276 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.10 10.56 113.37 1.20 1.10 16 2 O -0.36 -0.62 10.47 -51.37 -0.54 -1.16 16 3 C 0.47 2.00 7.13 71.24 0.51 2.50 16 4 O -0.52 -4.46 14.86 21.94 0.33 -4.13 16 5 C -0.02 -0.11 2.97 -12.29 -0.04 -0.14 16 6 H 0.13 0.46 6.99 -2.39 -0.02 0.45 16 7 C -0.14 -0.58 8.94 71.98 0.64 0.06 16 8 C -0.14 -0.98 4.41 -19.77 -0.09 -1.07 16 9 C -0.06 -0.51 7.93 22.25 0.18 -0.34 16 10 C -0.18 -1.24 10.04 22.28 0.22 -1.01 16 11 C -0.08 -0.50 10.04 22.25 0.22 -0.27 16 12 C -0.21 -1.42 8.78 22.36 0.20 -1.22 16 13 C 0.16 1.07 5.89 22.51 0.13 1.20 16 14 O -0.30 -1.22 4.92 -92.41 -0.45 -1.68 16 15 C 0.19 0.24 1.36 29.85 0.04 0.28 16 16 H 0.07 -0.20 3.90 -2.39 -0.01 -0.21 16 17 C -0.56 -7.56 8.30 25.60 0.21 -7.35 16 18 H 0.06 0.97 7.81 -2.91 -0.02 0.94 16 19 C 0.08 1.39 5.24 84.65 0.44 1.83 16 20 N -0.86 -14.27 10.93 21.45 0.23 -14.03 16 21 Si 0.91 17.96 29.54 68.60 2.03 19.99 16 22 H -0.28 -5.40 7.11 99.48 0.71 -4.70 16 23 H -0.30 -6.82 7.11 99.48 0.71 -6.12 16 24 H -0.29 -6.44 7.11 99.48 0.71 -5.74 16 25 C 0.02 -0.13 3.54 86.31 0.31 0.17 16 26 N -0.26 5.25 0.05 ******* -0.07 5.19 16 27 C -0.05 0.74 7.12 127.69 0.91 1.65 16 28 C -0.04 1.17 8.00 127.69 1.02 2.19 16 29 C -0.05 1.23 7.57 127.69 0.97 2.20 16 30 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H 0.07 -0.33 8.13 -2.39 -0.02 -0.35 16 32 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.16 8.11 -2.39 -0.02 0.14 16 35 H 0.06 0.23 7.39 -2.38 -0.02 0.21 16 36 H 0.12 0.84 7.52 -2.91 -0.02 0.82 16 37 H 0.13 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.14 0.70 5.74 -2.91 -0.02 0.68 16 40 H 0.27 4.99 8.31 -92.71 -0.77 4.22 16 41 H 0.14 -0.36 6.10 -2.39 -0.01 -0.38 16 42 H 0.14 -1.63 8.11 -2.39 -0.02 -1.65 16 43 H 0.11 -1.45 7.97 -2.38 -0.02 -1.47 16 44 H 0.13 -3.02 8.02 -2.39 -0.02 -3.03 16 45 H 0.10 -0.94 4.94 -2.39 -0.01 -0.95 16 46 H 0.13 -3.76 8.13 -2.39 -0.02 -3.78 16 47 H 0.14 -4.36 8.08 -2.39 -0.02 -4.38 16 48 H 0.11 -2.83 8.14 -2.39 -0.02 -2.85 16 49 H 0.09 -1.66 5.91 -2.39 -0.01 -1.67 16 50 H 0.14 -3.95 8.14 -2.38 -0.02 -3.97 16 51 H 0.14 -3.60 8.14 -2.38 -0.02 -3.62 16 Total: 0.00 -41.05 396.02 9.51 -31.54 By element: Atomic # 1 Polarization: -38.42 SS G_CDS: 0.91 Total: -37.51 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 7.08 Total: 1.79 kcal Atomic # 7 Polarization: -9.01 SS G_CDS: 0.17 Total: -8.85 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.67 Total: -6.97 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: 2.03 Total: 19.99 kcal Total: -41.05 9.51 -31.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234818589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.363 kcal (2) G-P(sol) polarization free energy of solvation -41.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds