Wall clock time and date at job start Tue Mar 31 2020 20:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46728 * 120.00199 * 2 1 3 5 5 C 1.52999 * 109.47049 * 294.99904 * 4 2 1 6 6 C 1.50702 * 109.47345 * 180.02562 * 5 4 2 7 7 C 1.38218 * 120.01633 * 99.99757 * 6 5 4 8 8 C 1.38213 * 120.02811 * 179.97438 * 7 6 5 9 9 C 1.38270 * 120.05420 * 0.02562 * 8 7 6 10 10 C 1.38174 * 120.02213 * 359.97438 * 9 8 7 11 11 C 1.38442 * 120.01247 * 279.72816 * 6 5 4 12 12 F 1.35099 * 120.02154 * 359.97438 * 11 6 5 13 13 C 1.50702 * 109.47127 * 239.99929 * 2 1 3 14 14 O 1.21281 * 119.99701 * 239.99896 * 13 2 1 15 15 N 1.34770 * 120.00080 * 60.00621 * 13 2 1 16 16 C 1.46496 * 120.00152 * 180.02562 * 15 13 2 17 17 C 1.53000 * 109.47167 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47114 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.46918 * 180.02562 * 18 17 16 20 20 C 1.46496 * 120.00254 * 90.00105 * 19 18 17 21 21 C 1.36941 * 119.99615 * 269.99551 * 19 18 17 22 22 H 1.07998 * 119.99992 * 23.04832 * 21 19 18 23 23 C 1.38813 * 119.99868 * 203.04734 * 21 19 18 24 24 N 1.31625 * 120.00024 * 12.93176 * 23 21 19 25 25 Si 1.86796 * 120.00141 * 192.92908 * 23 21 19 26 26 H 1.48493 * 109.47076 * 90.00131 * 25 23 21 27 27 H 1.48503 * 109.47431 * 210.00107 * 25 23 21 28 28 H 1.48501 * 109.46894 * 330.00130 * 25 23 21 29 29 H 1.09006 * 109.46897 * 60.00003 * 1 2 3 30 30 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47510 * 300.00334 * 1 2 3 32 32 H 1.08994 * 109.47247 * 54.99881 * 4 2 1 33 33 H 1.09001 * 109.47162 * 175.00268 * 4 2 1 34 34 H 1.09004 * 109.47570 * 300.00164 * 5 4 2 35 35 H 1.09004 * 109.47330 * 60.00332 * 5 4 2 36 36 H 1.08007 * 119.98514 * 359.95702 * 7 6 5 37 37 H 1.08010 * 119.97539 * 180.02562 * 8 7 6 38 38 H 1.07995 * 119.98813 * 179.97438 * 9 8 7 39 39 H 1.08001 * 120.01404 * 179.97438 * 10 9 8 40 40 H 0.97007 * 120.00122 * 359.97438 * 15 13 2 41 41 H 1.09003 * 109.46739 * 299.99496 * 16 15 13 42 42 H 1.08990 * 109.47280 * 59.99418 * 16 15 13 43 43 H 1.09003 * 109.46982 * 299.99472 * 17 16 15 44 44 H 1.09000 * 109.47574 * 59.99554 * 17 16 15 45 45 H 1.09003 * 109.46815 * 299.99636 * 18 17 16 46 46 H 1.08990 * 109.47258 * 59.99591 * 18 17 16 47 47 H 1.09005 * 109.47481 * 95.11702 * 20 19 18 48 48 H 1.08999 * 109.46928 * 215.11794 * 20 19 18 49 49 H 1.09004 * 109.46991 * 335.12034 * 20 19 18 50 50 H 0.96995 * 120.00036 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 0.0689 2.4953 6 6 2.1378 -0.6412 3.7258 7 6 3.2926 -0.2089 4.3503 8 6 3.7536 -0.8596 5.4791 9 6 3.0607 -1.9441 5.9848 10 6 1.9061 -2.3781 5.3622 11 6 1.4402 -1.7235 4.2344 12 9 0.3081 -2.1432 3.6283 13 6 2.0323 -0.7104 -1.2305 14 8 2.7296 -1.6965 -1.1191 15 7 1.7068 -0.2499 -2.4545 16 6 2.1947 -0.9409 -3.6507 17 6 1.6844 -0.2198 -4.8999 18 6 2.1945 -0.9411 -6.1492 19 7 1.7063 -0.2503 -7.3453 20 6 2.4982 0.8274 -7.9433 21 6 0.5098 -0.6121 -7.9045 22 1 -0.2376 -1.1106 -7.3051 23 6 0.2576 -0.3383 -9.2418 24 7 1.2411 0.0310 -10.0348 25 14 -1.4775 -0.4938 -9.9160 26 1 -2.1821 0.8055 -9.7739 27 1 -1.4190 -0.8709 -11.3512 28 1 -2.2107 -1.5399 -9.1589 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6052 -1.7198 1.2951 33 1 3.1262 -0.7995 1.2057 34 1 2.0697 1.0675 2.4495 35 1 0.5487 0.1471 2.5390 36 1 3.8351 0.6377 3.9558 37 1 4.6559 -0.5208 5.9667 38 1 3.4221 -2.4520 6.8667 39 1 1.3652 -3.2255 5.7571 40 1 1.1489 0.5386 -2.5436 41 1 3.2847 -0.9413 -3.6508 42 1 1.8310 -1.9683 -3.6505 43 1 0.5944 -0.2198 -4.8996 44 1 2.0478 0.8078 -4.9003 45 1 3.2845 -0.9407 -6.1493 46 1 1.8315 -1.9688 -6.1490 47 1 3.1132 0.4233 -8.7474 48 1 1.8301 1.5894 -8.3447 49 1 3.1405 1.2714 -7.1827 50 1 1.0650 0.2220 -10.9693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265035865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:20 Heat of formation + Delta-G solvation = -61.923749 kcal Electronic energy + Delta-G solvation = -27768.886862 eV Core-core repulsion = 23710.235134 eV Total energy + Delta-G solvation = -4058.651727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.18954 -40.02815 -39.39755 -36.45016 -35.82033 -34.72721 -32.85028 -31.85876 -30.92253 -29.94288 -28.51994 -26.06594 -25.74686 -25.10729 -23.17797 -22.92853 -21.82814 -21.18534 -20.48413 -19.57643 -17.95687 -17.11099 -16.82630 -16.71884 -16.25229 -15.87711 -15.78717 -15.67174 -14.94331 -14.84706 -14.58003 -14.16283 -13.91037 -13.83673 -13.55370 -13.37311 -13.14943 -13.06982 -12.88719 -12.69193 -12.59034 -12.16452 -11.93353 -11.87524 -11.64677 -11.51153 -11.39697 -11.04410 -11.00744 -10.92261 -10.79891 -10.77972 -10.47064 -10.19294 -9.86767 -9.79497 -9.69890 -9.35428 -9.00288 -8.93601 -8.53793 -6.73151 -5.71060 -3.18316 0.75756 0.79865 2.68219 3.13749 3.28497 3.38437 3.44676 3.46148 3.90084 4.17458 4.32655 4.49936 4.50290 4.55486 4.66246 4.71903 4.80798 4.91283 5.06812 5.14435 5.16603 5.25022 5.32442 5.44032 5.47042 5.47426 5.56575 5.59456 5.63294 5.69637 5.77556 5.83473 5.90168 5.92314 5.98710 6.05988 6.07754 6.11905 6.21441 6.42579 6.49978 6.60436 6.75319 6.77543 6.94822 7.38064 7.57683 7.74210 7.81611 8.27936 8.41486 9.25270 9.88820 10.37950 11.33723 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.027261 B = 0.001594 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.857624 B =17563.064459 C =18061.363158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 H 0.097 0.903 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.112 4.112 7 C -0.090 4.090 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.154 4.154 11 C 0.100 3.900 12 F -0.136 7.136 13 C 0.513 3.487 14 O -0.544 6.544 15 N -0.726 5.726 16 C 0.120 3.880 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.603 5.603 20 C 0.163 3.837 21 C -0.255 4.255 22 H 0.068 0.932 23 C 0.001 3.999 24 N -0.908 5.908 25 Si 0.904 3.096 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.399 0.601 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.031 0.969 48 H 0.039 0.961 49 H -0.003 1.003 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 2.109 32.824 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 H 0.115 0.885 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.108 4.108 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.172 4.172 11 C 0.081 3.919 12 F -0.115 7.115 13 C 0.298 3.702 14 O -0.421 6.421 15 N -0.377 5.377 16 C -0.004 4.004 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.326 5.326 20 C 0.018 3.982 21 C -0.385 4.385 22 H 0.086 0.914 23 C -0.197 4.197 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.134 1.410 32.633 32.814 hybrid contribution -1.412 0.271 -0.633 1.570 sum 1.723 1.681 32.001 32.091 Atomic orbital electron populations 1.21847 0.92835 1.03082 1.02697 1.21318 0.97712 1.00831 0.93302 0.88482 1.21356 1.02049 0.99100 0.90669 1.20666 1.01784 0.98669 0.90884 1.19974 0.96461 0.96399 0.98413 1.21001 0.94748 0.99852 0.95170 1.21226 1.00402 0.96336 0.96768 1.21015 0.94304 0.96562 0.99701 1.21177 0.98559 1.01541 0.95962 1.17601 0.84729 0.95807 0.93742 1.91505 1.48155 1.89296 1.82508 1.20603 0.80162 0.84667 0.84728 1.90696 1.38114 1.26414 1.86917 1.46168 1.53509 1.32095 1.05945 1.21447 0.99027 0.96543 0.83399 1.22522 1.01789 1.00189 0.94561 1.20599 0.96069 0.94841 0.85807 1.43893 1.22312 1.37918 1.28441 1.20784 0.93756 0.90017 0.93641 1.19198 0.91463 1.35576 0.92246 0.91431 1.25036 0.97476 1.01422 0.95799 1.70073 1.29454 1.51102 1.04688 0.86252 0.84351 0.77792 0.78134 1.21557 1.21738 1.20486 0.91904 0.91879 0.91290 0.90996 0.90770 0.90289 0.90191 0.84986 0.85345 0.85135 0.84815 0.76639 0.91874 0.91730 0.91590 0.92278 0.94440 0.93296 0.95098 0.94190 0.98446 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.11 -1.00 2.72 -91.77 -0.25 -1.25 16 3 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.09 -0.89 4.01 -26.73 -0.11 -1.00 16 5 C -0.08 -0.61 4.83 -27.88 -0.13 -0.74 16 6 C -0.11 -0.92 5.14 -104.55 -0.54 -1.45 16 7 C -0.09 -0.61 9.67 -39.60 -0.38 -0.99 16 8 C -0.13 -0.77 10.04 -39.58 -0.40 -1.17 16 9 C -0.10 -0.60 10.04 -39.59 -0.40 -0.99 16 10 C -0.15 -1.15 10.03 -39.52 -0.40 -1.55 16 11 C 0.10 0.92 7.24 -39.42 -0.29 0.63 16 12 F -0.14 -1.42 16.66 2.25 0.04 -1.38 16 13 C 0.51 6.69 7.15 -10.99 -0.08 6.61 16 14 O -0.54 -9.33 15.92 5.56 0.09 -9.24 16 15 N -0.73 -8.98 5.45 -60.30 -0.33 -9.31 16 16 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 17 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 18 C 0.16 3.15 5.64 -4.04 -0.02 3.13 16 19 N -0.60 -15.19 2.92 -181.12 -0.53 -15.72 16 20 C 0.16 4.02 8.98 59.84 0.54 4.56 16 21 C -0.26 -7.03 9.65 -15.06 -0.15 -7.17 16 22 H 0.07 1.82 7.86 -52.49 -0.41 1.40 16 23 C 0.00 0.02 5.10 -17.43 -0.09 -0.06 16 24 N -0.91 -26.71 10.71 55.49 0.59 -26.12 16 25 Si 0.90 21.91 29.57 -169.99 -5.03 16.89 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 34 H 0.08 0.45 8.00 -51.93 -0.42 0.03 16 35 H 0.08 0.57 6.36 -51.93 -0.33 0.24 16 36 H 0.13 0.64 8.04 -52.48 -0.42 0.22 16 37 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.40 4.00 7.89 -40.82 -0.32 3.68 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 46 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 47 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 48 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 49 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 411.53 15.07 6.20 6.20 Total: -1.00 -33.25 411.53 -9.92 -43.17 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.43 Total: -1.33 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.53 Total: -3.17 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.26 Total: -51.14 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.25 -9.92 -43.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265035865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.749 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds