Wall clock time and date at job start Tue Mar 31 2020 20:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46728 * 120.00199 * 2 1 3 5 5 C 1.52999 * 109.47049 * 294.99904 * 4 2 1 6 6 C 1.50702 * 109.47345 * 180.02562 * 5 4 2 7 7 C 1.38218 * 120.01633 * 99.99757 * 6 5 4 8 8 C 1.38213 * 120.02811 * 179.97438 * 7 6 5 9 9 C 1.38270 * 120.05420 * 0.02562 * 8 7 6 10 10 C 1.38174 * 120.02213 * 359.97438 * 9 8 7 11 11 C 1.38442 * 120.01247 * 279.72816 * 6 5 4 12 12 F 1.35099 * 120.02154 * 359.97438 * 11 6 5 13 13 C 1.50702 * 109.47127 * 239.99929 * 2 1 3 14 14 O 1.21281 * 119.99701 * 239.99896 * 13 2 1 15 15 N 1.34770 * 120.00080 * 60.00621 * 13 2 1 16 16 C 1.46496 * 120.00152 * 180.02562 * 15 13 2 17 17 C 1.53000 * 109.47167 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47114 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.46918 * 180.02562 * 18 17 16 20 20 C 1.46496 * 120.00254 * 90.00105 * 19 18 17 21 21 C 1.36941 * 119.99615 * 269.99551 * 19 18 17 22 22 H 1.07998 * 119.99992 * 23.04832 * 21 19 18 23 23 C 1.38813 * 119.99868 * 203.04734 * 21 19 18 24 24 N 1.31625 * 120.00024 * 12.93176 * 23 21 19 25 25 Si 1.86796 * 120.00141 * 192.92908 * 23 21 19 26 26 H 1.48493 * 109.47076 * 90.00131 * 25 23 21 27 27 H 1.48503 * 109.47431 * 210.00107 * 25 23 21 28 28 H 1.48501 * 109.46894 * 330.00130 * 25 23 21 29 29 H 1.09006 * 109.46897 * 60.00003 * 1 2 3 30 30 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47510 * 300.00334 * 1 2 3 32 32 H 1.08994 * 109.47247 * 54.99881 * 4 2 1 33 33 H 1.09001 * 109.47162 * 175.00268 * 4 2 1 34 34 H 1.09004 * 109.47570 * 300.00164 * 5 4 2 35 35 H 1.09004 * 109.47330 * 60.00332 * 5 4 2 36 36 H 1.08007 * 119.98514 * 359.95702 * 7 6 5 37 37 H 1.08010 * 119.97539 * 180.02562 * 8 7 6 38 38 H 1.07995 * 119.98813 * 179.97438 * 9 8 7 39 39 H 1.08001 * 120.01404 * 179.97438 * 10 9 8 40 40 H 0.97007 * 120.00122 * 359.97438 * 15 13 2 41 41 H 1.09003 * 109.46739 * 299.99496 * 16 15 13 42 42 H 1.08990 * 109.47280 * 59.99418 * 16 15 13 43 43 H 1.09003 * 109.46982 * 299.99472 * 17 16 15 44 44 H 1.09000 * 109.47574 * 59.99554 * 17 16 15 45 45 H 1.09003 * 109.46815 * 299.99636 * 18 17 16 46 46 H 1.08990 * 109.47258 * 59.99591 * 18 17 16 47 47 H 1.09005 * 109.47481 * 95.11702 * 20 19 18 48 48 H 1.08999 * 109.46928 * 215.11794 * 20 19 18 49 49 H 1.09004 * 109.46991 * 335.12034 * 20 19 18 50 50 H 0.96995 * 120.00036 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 0.0689 2.4953 6 6 2.1378 -0.6412 3.7258 7 6 3.2926 -0.2089 4.3503 8 6 3.7536 -0.8596 5.4791 9 6 3.0607 -1.9441 5.9848 10 6 1.9061 -2.3781 5.3622 11 6 1.4402 -1.7235 4.2344 12 9 0.3081 -2.1432 3.6283 13 6 2.0323 -0.7104 -1.2305 14 8 2.7296 -1.6965 -1.1191 15 7 1.7068 -0.2499 -2.4545 16 6 2.1947 -0.9409 -3.6507 17 6 1.6844 -0.2198 -4.8999 18 6 2.1945 -0.9411 -6.1492 19 7 1.7063 -0.2503 -7.3453 20 6 2.4982 0.8274 -7.9433 21 6 0.5098 -0.6121 -7.9045 22 1 -0.2376 -1.1106 -7.3051 23 6 0.2576 -0.3383 -9.2418 24 7 1.2411 0.0310 -10.0348 25 14 -1.4775 -0.4938 -9.9160 26 1 -2.1821 0.8055 -9.7739 27 1 -1.4190 -0.8709 -11.3512 28 1 -2.2107 -1.5399 -9.1589 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6052 -1.7198 1.2951 33 1 3.1262 -0.7995 1.2057 34 1 2.0697 1.0675 2.4495 35 1 0.5487 0.1471 2.5390 36 1 3.8351 0.6377 3.9558 37 1 4.6559 -0.5208 5.9667 38 1 3.4221 -2.4520 6.8667 39 1 1.3652 -3.2255 5.7571 40 1 1.1489 0.5386 -2.5436 41 1 3.2847 -0.9413 -3.6508 42 1 1.8310 -1.9683 -3.6505 43 1 0.5944 -0.2198 -4.8996 44 1 2.0478 0.8078 -4.9003 45 1 3.2845 -0.9407 -6.1493 46 1 1.8315 -1.9688 -6.1490 47 1 3.1132 0.4233 -8.7474 48 1 1.8301 1.5894 -8.3447 49 1 3.1405 1.2714 -7.1827 50 1 1.0650 0.2220 -10.9693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265035865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:19 Heat of formation + Delta-G solvation = -80.139614 kcal Electronic energy + Delta-G solvation = -27769.676761 eV Core-core repulsion = 23710.235134 eV Total energy + Delta-G solvation = -4059.441627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.87720 -41.01831 -39.96639 -38.01184 -36.74566 -36.12381 -33.90938 -33.22952 -31.59770 -31.37580 -29.20332 -27.95036 -27.12609 -26.10945 -24.10112 -23.68863 -23.01831 -22.16258 -21.81295 -20.62582 -18.72465 -18.55608 -18.00541 -17.42466 -17.26730 -16.83625 -16.74959 -16.53520 -16.44441 -16.00548 -15.48914 -15.21023 -15.08905 -14.84831 -14.61957 -14.54597 -14.42692 -14.11128 -13.77359 -13.69797 -13.39443 -13.26257 -13.04793 -12.80305 -12.71091 -12.64301 -12.57077 -12.49707 -12.41171 -12.28624 -12.09567 -12.08531 -11.84182 -11.66119 -11.60941 -11.48554 -10.81252 -10.61564 -10.07259 -9.87358 -9.56138 -8.77445 -7.82152 -5.31911 0.22111 0.29106 1.47177 1.47576 1.56778 1.65401 2.21618 2.51975 2.67664 3.31056 3.35495 3.58081 3.65551 3.71791 3.80567 3.94969 4.03438 4.11800 4.16553 4.27636 4.32269 4.41920 4.45977 4.49066 4.50348 4.57521 4.65120 4.71813 4.80649 4.86300 4.89803 4.93887 4.95821 5.01806 5.04272 5.15042 5.23799 5.26017 5.29133 5.34355 5.36347 5.47027 5.47538 5.51392 5.51567 5.64005 5.71897 6.00058 6.33588 6.58610 7.16017 7.27067 7.88106 8.31752 9.20931 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.027261 B = 0.001594 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.857624 B =17563.064459 C =18061.363158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.129 0.871 4 C -0.087 4.087 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.166 4.166 11 C 0.068 3.932 12 F -0.152 7.152 13 C 0.509 3.491 14 O -0.590 6.590 15 N -0.717 5.717 16 C 0.131 3.869 17 C -0.126 4.126 18 C 0.149 3.851 19 N -0.620 5.620 20 C 0.176 3.824 21 C -0.262 4.262 22 H 0.071 0.929 23 C -0.056 4.056 24 N -0.941 5.941 25 Si 0.969 3.031 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.269 1.269 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.002 0.998 48 H 0.015 0.985 49 H 0.033 0.967 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 3.566 35.037 35.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.147 0.853 4 C -0.125 4.125 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.114 4.114 8 C -0.147 4.147 9 C -0.117 4.117 10 C -0.185 4.185 11 C 0.049 3.951 12 F -0.131 7.131 13 C 0.297 3.703 14 O -0.471 6.471 15 N -0.369 5.369 16 C 0.006 3.994 17 C -0.167 4.167 18 C 0.023 3.977 19 N -0.344 5.344 20 C 0.031 3.969 21 C -0.392 4.392 22 H 0.089 0.911 23 C -0.250 4.250 24 N -0.588 5.588 25 Si 0.797 3.203 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.194 1.194 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.034 0.966 49 H 0.052 0.948 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.000 2.881 34.890 35.137 hybrid contribution -1.283 -0.237 -1.228 1.792 sum 1.717 2.644 33.662 33.810 Atomic orbital electron populations 1.21860 0.91663 1.02381 1.04314 1.21345 0.98463 1.01652 0.90684 0.85277 1.21246 1.00853 0.98208 0.92199 1.20632 1.02030 0.99263 0.89358 1.20172 0.97135 0.96473 0.98955 1.21326 0.94257 1.00458 0.95337 1.21617 1.00972 0.95784 0.96350 1.21374 0.93551 0.96600 1.00209 1.21424 0.99350 1.01892 0.95789 1.17993 0.85042 0.97130 0.94909 1.91453 1.49078 1.89624 1.82948 1.21343 0.79180 0.84100 0.85714 1.90679 1.40283 1.28573 1.87551 1.46030 1.53382 1.32310 1.05171 1.21147 0.98772 0.95870 0.83612 1.22143 1.01127 1.00079 0.93312 1.20779 0.96800 0.94567 0.85566 1.44149 1.22000 1.38539 1.29695 1.20538 0.93145 0.89340 0.93852 1.19532 0.92493 1.34720 0.92459 0.91108 1.25817 1.01055 1.01911 0.96252 1.70240 1.31269 1.52627 1.04626 0.85235 0.80092 0.77948 0.76990 1.21126 1.22284 1.19362 0.90746 0.93773 0.89225 0.93911 0.92207 0.87836 0.90037 0.82969 0.82754 0.82656 0.84050 0.74924 0.92097 0.92950 0.92206 0.91441 0.93320 0.94059 0.97939 0.96617 0.94849 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.84 71.98 0.64 -1.35 16 2 C -0.10 -1.64 2.72 -11.54 -0.03 -1.67 16 3 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.09 -1.61 4.01 30.59 0.12 -1.49 16 5 C -0.08 -1.00 4.83 29.85 0.14 -0.86 16 6 C -0.13 -1.98 5.14 -19.82 -0.10 -2.08 16 7 C -0.10 -1.11 9.67 22.26 0.22 -0.90 16 8 C -0.13 -1.25 10.04 22.27 0.22 -1.03 16 9 C -0.10 -1.05 10.04 22.26 0.22 -0.82 16 10 C -0.17 -2.44 10.03 22.31 0.22 -2.22 16 11 C 0.07 1.27 7.24 22.38 0.16 1.43 16 12 F -0.15 -3.35 16.66 44.97 0.75 -2.60 16 13 C 0.51 12.78 7.15 87.66 0.63 13.40 16 14 O -0.59 -20.42 15.92 -3.03 -0.05 -20.47 16 15 N -0.72 -16.49 5.45 -463.08 -2.52 -19.01 16 16 C 0.13 3.66 5.67 86.38 0.49 4.15 16 17 C -0.13 -3.95 5.65 30.60 0.17 -3.77 16 18 C 0.15 5.93 5.64 86.38 0.49 6.42 16 19 N -0.62 -31.00 2.92 -726.93 -2.12 -33.13 16 20 C 0.18 8.70 8.98 127.77 1.15 9.85 16 21 C -0.26 -14.36 9.65 84.03 0.81 -13.54 16 22 H 0.07 3.76 7.86 -2.91 -0.02 3.73 16 23 C -0.06 -3.13 5.10 84.86 0.43 -2.69 16 24 N -0.94 -56.20 10.71 21.65 0.23 -55.97 16 25 Si 0.97 45.14 29.57 68.60 2.03 47.16 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 29 H 0.07 0.86 7.56 -2.38 -0.02 0.84 16 30 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 0.89 6.57 -2.39 -0.02 0.87 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 34 H 0.10 0.85 8.00 -2.38 -0.02 0.83 16 35 H 0.08 1.05 6.36 -2.39 -0.02 1.03 16 36 H 0.15 1.05 8.04 -2.91 -0.02 1.03 16 37 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.41 7.17 7.89 -92.70 -0.73 6.44 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 46 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 47 H 0.00 0.13 7.34 -2.38 -0.02 0.11 16 48 H 0.01 0.81 7.34 -2.39 -0.02 0.79 16 49 H 0.03 1.37 8.03 -2.38 -0.02 1.35 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -73.65 411.53 4.49 -69.16 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.19 Total: 12.04 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.99 Total: 2.82 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -4.42 Total: -108.11 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.75 Total: -2.60 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.65 4.49 -69.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265035865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.978 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds