Wall clock time and date at job start Tue Mar 31 2020 21:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47355 * 2 1 4 4 C 1.53004 * 109.47384 * 120.00046 * 2 1 3 5 5 C 1.53005 * 109.47085 * 185.00200 * 4 2 1 6 6 N 1.46502 * 109.46708 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99818 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99948 * 0.02562 * 7 6 5 9 9 C 1.47709 * 120.00121 * 180.02562 * 7 6 5 10 10 C 1.41494 * 126.52007 * 179.97438 * 9 7 6 11 11 C 1.35367 * 105.50576 * 179.97438 * 10 9 7 12 12 N 1.35031 * 107.22543 * 0.23337 * 11 10 9 13 13 C 1.46500 * 124.88418 * 179.76759 * 12 11 10 14 14 C 1.53184 * 109.54307 * 34.55346 * 13 12 11 15 15 C 1.53093 * 109.16201 * 183.15628 * 14 13 12 16 16 O 1.42899 * 109.41581 * 57.60564 * 15 14 13 17 17 C 1.42904 * 114.10032 * 298.83846 * 16 15 14 18 18 C 1.53091 * 109.41147 * 61.16201 * 17 16 15 19 19 N 1.28472 * 110.23159 * 359.60437 * 12 11 10 20 20 N 1.46494 * 109.47458 * 240.00202 * 2 1 3 21 21 C 1.36937 * 120.00304 * 84.99594 * 20 2 1 22 22 H 1.08007 * 119.99724 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00656 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99426 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00423 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47308 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47255 * 120.00143 * 25 23 21 28 28 H 1.48504 * 109.47303 * 240.00243 * 25 23 21 29 29 H 1.08997 * 109.47236 * 299.99632 * 1 2 3 30 30 H 1.09001 * 109.47385 * 59.99877 * 1 2 3 31 31 H 1.09004 * 109.47355 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47216 * 65.00083 * 4 2 1 33 33 H 1.09004 * 109.46698 * 305.00151 * 4 2 1 34 34 H 1.09000 * 109.46793 * 60.00521 * 5 4 2 35 35 H 1.08996 * 109.47017 * 300.00152 * 5 4 2 36 36 H 0.97003 * 120.00221 * 359.97438 * 6 5 4 37 37 H 1.08008 * 127.24760 * 359.94878 * 10 9 7 38 38 H 1.08002 * 126.38433 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.54496 * 154.81541 * 13 12 11 40 40 H 1.09003 * 109.51528 * 303.05678 * 14 13 12 41 41 H 1.08996 * 109.52294 * 63.24816 * 14 13 12 42 42 H 1.09006 * 109.47698 * 297.62234 * 15 14 13 43 43 H 1.09001 * 109.48034 * 177.59056 * 15 14 13 44 44 H 1.08997 * 109.48255 * 301.18414 * 17 16 15 45 45 H 1.08996 * 109.48098 * 181.14088 * 17 16 15 46 46 H 1.08998 * 109.52177 * 182.48758 * 18 17 16 47 47 H 1.09001 * 109.57796 * 62.32677 * 18 17 16 48 48 H 0.97000 * 120.00031 * 264.99840 * 20 2 1 49 49 H 0.97009 * 119.99747 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5102 7 6 5.3740 -1.3385 2.7759 8 8 6.1602 -0.7972 2.0230 9 6 5.8664 -2.0348 3.9820 10 6 7.2150 -2.1570 4.3921 11 6 7.1803 -2.8694 5.5426 12 7 5.8856 -3.1571 5.7959 13 6 5.4076 -3.9225 6.9499 14 6 6.2900 -3.6217 8.1654 15 6 5.8324 -4.4845 9.3444 16 8 5.8960 -5.8638 8.9765 17 6 5.0548 -6.2135 7.8755 18 6 5.4812 -5.4203 6.6375 19 7 5.1328 -2.6601 4.8810 20 7 2.0183 -0.6905 -1.1961 21 6 2.1491 -0.0074 -2.3757 22 1 1.8925 1.0406 -2.4241 23 6 2.6113 -0.6618 -3.5093 24 7 2.9235 -1.9391 -3.4504 25 14 2.7904 0.2703 -5.1182 26 1 2.3775 1.6829 -4.9205 27 1 4.2072 0.2265 -5.5606 28 1 1.9292 -0.3575 -6.1524 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1370 34 1 3.8531 0.4371 1.3574 35 1 3.9995 -1.0727 0.4259 36 1 3.4257 -1.7343 3.1115 37 1 8.0884 -1.7647 3.8922 38 1 8.0302 -3.1579 6.1434 39 1 4.3762 -3.6460 7.1691 40 1 7.3285 -3.8517 7.9272 41 1 6.2004 -2.5679 8.4287 42 1 4.8069 -4.2254 9.6079 43 1 6.4839 -4.3060 10.1999 44 1 4.0192 -5.9770 8.1198 45 1 5.1461 -7.2805 7.6728 46 1 4.8131 -5.6526 5.8082 47 1 6.5032 -5.6863 6.3674 48 1 2.2490 -1.6317 -1.1526 49 1 3.2462 -2.3965 -4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267128794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:40 Heat of formation + Delta-G solvation = -0.019357 kcal Electronic energy + Delta-G solvation = -28440.364455 eV Core-core repulsion = 24404.317065 eV Total energy + Delta-G solvation = -4036.047390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.93624 -39.91939 -39.06838 -36.50575 -35.27628 -34.27376 -32.22640 -31.95309 -31.20906 -30.83279 -29.15175 -28.04235 -25.92674 -24.42231 -23.99037 -23.27897 -22.34915 -21.85116 -20.39878 -20.17485 -19.46934 -18.25768 -17.24585 -16.91613 -16.81610 -16.44981 -16.02278 -15.54900 -15.46586 -15.20368 -14.65990 -14.48588 -14.24300 -13.94596 -13.82198 -13.71048 -13.44055 -13.18785 -13.05000 -12.84076 -12.42941 -12.20988 -12.09045 -11.98144 -11.62505 -11.48893 -11.18507 -11.08616 -11.01142 -10.86688 -10.69300 -10.58325 -10.41419 -10.23772 -9.99323 -9.74875 -9.58398 -9.43557 -9.22766 -8.86569 -8.68513 -6.89092 -5.69460 -2.97912 1.50798 2.01613 2.06084 3.18459 3.40700 3.49033 3.54576 3.56779 3.57173 3.67880 3.92918 4.14270 4.24435 4.38838 4.44455 4.51394 4.65979 4.69613 4.79484 4.88471 4.99328 5.01207 5.15723 5.23459 5.29752 5.37791 5.42427 5.47291 5.54457 5.62671 5.64428 5.76511 5.94447 6.14127 6.22352 6.25783 6.41488 6.45984 6.47712 6.52774 6.55189 6.75127 6.79761 6.92212 7.11697 7.59872 7.77908 7.88212 8.45043 8.48907 9.60247 10.17407 10.52012 11.53273 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.001931 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.685844 B =14497.743123 C =14891.917670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.715 5.715 7 C 0.597 3.403 8 O -0.529 6.529 9 C -0.008 4.008 10 C -0.177 4.177 11 C -0.021 4.021 12 N -0.280 5.280 13 C 0.150 3.850 14 C -0.167 4.167 15 C 0.066 3.934 16 O -0.379 6.379 17 C 0.065 3.935 18 C -0.168 4.168 19 N -0.263 5.263 20 N -0.723 5.723 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.401 0.599 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -7.082 30.781 32.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.366 5.366 7 C 0.380 3.620 8 O -0.404 6.404 9 C -0.169 4.169 10 C -0.205 4.205 11 C -0.163 4.163 12 N -0.068 5.068 13 C 0.049 3.951 14 C -0.206 4.206 15 C -0.011 4.011 16 O -0.298 6.298 17 C -0.012 4.012 18 C -0.207 4.207 19 N -0.098 5.098 20 N -0.365 5.365 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.235 0.765 37 H 0.180 0.820 38 H 0.196 0.804 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.217 0.783 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.791 -6.998 30.510 31.667 hybrid contribution 0.534 0.299 -1.066 1.229 sum 5.325 -6.699 29.445 30.663 Atomic orbital electron populations 1.22420 0.99164 1.00810 0.99923 1.20155 0.91849 0.95598 0.86024 0.93247 1.22058 0.93876 1.01830 0.99299 1.21502 0.94459 0.97194 0.86920 1.45966 1.06791 1.56421 1.27380 1.16890 0.82620 0.79504 0.82946 1.90830 1.55618 1.45717 1.48187 1.22097 0.92555 1.04758 0.97495 1.21813 0.97437 1.04332 0.96922 1.22735 0.88497 1.04675 1.00388 1.45585 1.04447 1.38312 1.18468 1.21570 1.00487 0.90896 0.82189 1.22646 1.00995 1.02310 0.94615 1.22572 1.01653 0.80947 0.95978 1.87994 1.66172 1.25331 1.50263 1.22600 0.93875 1.00116 0.84618 1.22685 1.04697 0.92971 1.00357 1.73491 1.23936 1.12698 0.99714 1.42463 1.78052 1.10675 1.05356 1.19271 1.36262 0.93846 0.87304 0.91149 1.24733 1.02279 0.95980 0.98062 1.69673 1.51089 1.08637 1.28681 0.86142 0.77293 0.78782 0.84135 1.20599 1.21906 1.22039 0.94588 0.92741 0.93542 0.91591 0.91922 0.91647 0.89536 0.76457 0.81977 0.80435 0.87161 0.89482 0.89321 0.92361 0.87666 0.92319 0.87701 0.89281 0.89841 0.78281 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.15 0.35 -2.56 16 2 C 0.17 3.43 2.89 -67.94 -0.20 3.23 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C -0.13 -2.13 4.87 -26.73 -0.13 -2.26 16 5 C 0.12 2.16 5.56 -4.04 -0.02 2.14 16 6 N -0.71 -11.21 5.55 -61.29 -0.34 -11.55 16 7 C 0.60 10.35 7.82 -12.39 -0.10 10.25 16 8 O -0.53 -11.15 16.93 5.30 0.09 -11.06 16 9 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 10 C -0.18 -2.16 10.81 -39.37 -0.43 -2.59 16 11 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 12 N -0.28 -2.63 3.23 -54.64 -0.18 -2.81 16 13 C 0.15 0.90 3.16 -67.74 -0.21 0.68 16 14 C -0.17 -0.66 5.10 -26.59 -0.14 -0.80 16 15 C 0.07 0.23 6.84 37.21 0.25 0.49 16 16 O -0.38 -2.19 10.77 -35.23 -0.38 -2.57 16 17 C 0.07 0.29 6.84 37.20 0.25 0.54 16 18 C -0.17 -0.92 5.75 -26.59 -0.15 -1.08 16 19 N -0.26 -3.27 11.67 33.42 0.39 -2.88 16 20 N -0.72 -18.09 4.57 -53.43 -0.24 -18.34 16 21 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 25 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.88 7.75 -51.93 -0.40 1.47 16 36 H 0.40 5.33 8.20 -40.82 -0.33 4.99 16 37 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.18 0.96 7.08 -52.49 -0.37 0.58 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.33 6.90 -51.93 -0.36 -0.03 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 49 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -35.35 402.87 -8.51 -43.86 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.09 Total: 9.64 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.53 Total: -0.31 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 0.35 Total: -63.60 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.29 Total: -13.63 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.35 -8.51 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267128794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.845 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds