Wall clock time and date at job start Tue Mar 31 2020 21:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47355 * 2 1 4 4 C 1.53004 * 109.47384 * 120.00046 * 2 1 3 5 5 C 1.53005 * 109.47085 * 185.00200 * 4 2 1 6 6 N 1.46502 * 109.46708 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99818 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99948 * 0.02562 * 7 6 5 9 9 C 1.47709 * 120.00121 * 180.02562 * 7 6 5 10 10 C 1.41494 * 126.52007 * 179.97438 * 9 7 6 11 11 C 1.35367 * 105.50576 * 179.97438 * 10 9 7 12 12 N 1.35031 * 107.22543 * 0.23337 * 11 10 9 13 13 C 1.46500 * 124.88418 * 179.76759 * 12 11 10 14 14 C 1.53184 * 109.54307 * 34.55346 * 13 12 11 15 15 C 1.53093 * 109.16201 * 183.15628 * 14 13 12 16 16 O 1.42899 * 109.41581 * 57.60564 * 15 14 13 17 17 C 1.42904 * 114.10032 * 298.83846 * 16 15 14 18 18 C 1.53091 * 109.41147 * 61.16201 * 17 16 15 19 19 N 1.28472 * 110.23159 * 359.60437 * 12 11 10 20 20 N 1.46494 * 109.47458 * 240.00202 * 2 1 3 21 21 C 1.36937 * 120.00304 * 84.99594 * 20 2 1 22 22 H 1.08007 * 119.99724 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00656 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99426 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00423 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47308 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47255 * 120.00143 * 25 23 21 28 28 H 1.48504 * 109.47303 * 240.00243 * 25 23 21 29 29 H 1.08997 * 109.47236 * 299.99632 * 1 2 3 30 30 H 1.09001 * 109.47385 * 59.99877 * 1 2 3 31 31 H 1.09004 * 109.47355 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47216 * 65.00083 * 4 2 1 33 33 H 1.09004 * 109.46698 * 305.00151 * 4 2 1 34 34 H 1.09000 * 109.46793 * 60.00521 * 5 4 2 35 35 H 1.08996 * 109.47017 * 300.00152 * 5 4 2 36 36 H 0.97003 * 120.00221 * 359.97438 * 6 5 4 37 37 H 1.08008 * 127.24760 * 359.94878 * 10 9 7 38 38 H 1.08002 * 126.38433 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.54496 * 154.81541 * 13 12 11 40 40 H 1.09003 * 109.51528 * 303.05678 * 14 13 12 41 41 H 1.08996 * 109.52294 * 63.24816 * 14 13 12 42 42 H 1.09006 * 109.47698 * 297.62234 * 15 14 13 43 43 H 1.09001 * 109.48034 * 177.59056 * 15 14 13 44 44 H 1.08997 * 109.48255 * 301.18414 * 17 16 15 45 45 H 1.08996 * 109.48098 * 181.14088 * 17 16 15 46 46 H 1.08998 * 109.52177 * 182.48758 * 18 17 16 47 47 H 1.09001 * 109.57796 * 62.32677 * 18 17 16 48 48 H 0.97000 * 120.00031 * 264.99840 * 20 2 1 49 49 H 0.97009 * 119.99747 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5102 7 6 5.3740 -1.3385 2.7759 8 8 6.1602 -0.7972 2.0230 9 6 5.8664 -2.0348 3.9820 10 6 7.2150 -2.1570 4.3921 11 6 7.1803 -2.8694 5.5426 12 7 5.8856 -3.1571 5.7959 13 6 5.4076 -3.9225 6.9499 14 6 6.2900 -3.6217 8.1654 15 6 5.8324 -4.4845 9.3444 16 8 5.8960 -5.8638 8.9765 17 6 5.0548 -6.2135 7.8755 18 6 5.4812 -5.4203 6.6375 19 7 5.1328 -2.6601 4.8810 20 7 2.0183 -0.6905 -1.1961 21 6 2.1491 -0.0074 -2.3757 22 1 1.8925 1.0406 -2.4241 23 6 2.6113 -0.6618 -3.5093 24 7 2.9235 -1.9391 -3.4504 25 14 2.7904 0.2703 -5.1182 26 1 2.3775 1.6829 -4.9205 27 1 4.2072 0.2265 -5.5606 28 1 1.9292 -0.3575 -6.1524 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1370 34 1 3.8531 0.4371 1.3574 35 1 3.9995 -1.0727 0.4259 36 1 3.4257 -1.7343 3.1115 37 1 8.0884 -1.7647 3.8922 38 1 8.0302 -3.1579 6.1434 39 1 4.3762 -3.6460 7.1691 40 1 7.3285 -3.8517 7.9272 41 1 6.2004 -2.5679 8.4287 42 1 4.8069 -4.2254 9.6079 43 1 6.4839 -4.3060 10.1999 44 1 4.0192 -5.9770 8.1198 45 1 5.1461 -7.2805 7.6728 46 1 4.8131 -5.6526 5.8082 47 1 6.5032 -5.6863 6.3674 48 1 2.2490 -1.6317 -1.1526 49 1 3.2462 -2.3965 -4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267128794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:39 Heat of formation + Delta-G solvation = -25.855717 kcal Electronic energy + Delta-G solvation = -28441.484804 eV Core-core repulsion = 24404.317065 eV Total energy + Delta-G solvation = -4037.167739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.78710 -40.63631 -40.12215 -38.14142 -35.89117 -35.82695 -34.14925 -32.32525 -32.02312 -31.77591 -30.85498 -29.54638 -26.68594 -25.82243 -24.83697 -24.51462 -23.15101 -22.97627 -21.71334 -20.95693 -20.74098 -19.31227 -18.99920 -17.92692 -17.34062 -17.05805 -16.92515 -16.81214 -16.66654 -16.21587 -15.79641 -15.59366 -15.36252 -15.33470 -14.84385 -14.69190 -14.56797 -14.36014 -14.13970 -14.04457 -13.56301 -13.41550 -13.24524 -12.85488 -12.64485 -12.63926 -12.42093 -12.29753 -12.25210 -12.10765 -12.05705 -11.95363 -11.70856 -11.60489 -11.50571 -11.23759 -10.94649 -10.72572 -10.38243 -10.18133 -9.98724 -8.97407 -7.91907 -5.18841 0.46620 1.12822 1.35053 1.45739 1.47594 1.56696 2.14761 2.32899 2.57544 2.90618 3.15250 3.42238 3.50618 3.55868 3.81369 3.82277 3.85322 3.90641 3.97847 4.10837 4.18355 4.24111 4.32241 4.36723 4.46384 4.57024 4.66036 4.66860 4.69280 4.71707 4.75723 4.78547 4.88720 4.93600 4.97115 5.01308 5.06471 5.10032 5.19727 5.28456 5.39238 5.40133 5.55011 5.61721 5.80471 6.19128 6.31020 6.42100 6.86475 7.14744 7.36695 8.14480 8.35936 9.31938 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.001931 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.685844 B =14497.743123 C =14891.917670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 H 0.045 0.955 4 C -0.115 4.115 5 C 0.133 3.867 6 N -0.702 5.702 7 C 0.593 3.407 8 O -0.579 6.579 9 C -0.041 4.041 10 C -0.202 4.202 11 C 0.003 3.997 12 N -0.269 5.269 13 C 0.141 3.859 14 C -0.160 4.160 15 C 0.064 3.936 16 O -0.397 6.397 17 C 0.067 3.933 18 C -0.163 4.163 19 N -0.268 5.268 20 N -0.735 5.735 21 C -0.230 4.230 22 H 0.076 0.924 23 C -0.082 4.082 24 N -0.971 5.971 25 Si 0.968 3.032 26 H -0.265 1.265 27 H -0.299 1.299 28 H -0.294 1.294 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.415 0.585 37 H 0.160 0.840 38 H 0.220 0.780 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.371 0.629 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -7.035 33.948 34.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.353 5.353 7 C 0.378 3.622 8 O -0.457 6.457 9 C -0.199 4.199 10 C -0.230 4.230 11 C -0.140 4.140 12 N -0.057 5.057 13 C 0.042 3.958 14 C -0.198 4.198 15 C -0.013 4.013 16 O -0.316 6.316 17 C -0.010 4.010 18 C -0.202 4.202 19 N -0.104 5.104 20 N -0.376 5.376 21 C -0.362 4.362 22 H 0.094 0.906 23 C -0.273 4.273 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.189 1.189 27 H -0.226 1.226 28 H -0.221 1.221 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.252 0.748 37 H 0.178 0.822 38 H 0.236 0.764 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.054 -6.927 33.741 34.683 hybrid contribution 0.730 0.256 -1.852 2.007 sum 4.784 -6.671 31.890 32.929 Atomic orbital electron populations 1.22252 0.96979 1.01048 1.00946 1.20454 0.93250 0.95232 0.85463 0.93698 1.21917 0.92258 1.02059 0.99116 1.21200 0.95572 0.96284 0.86047 1.45786 1.06819 1.55951 1.26734 1.17360 0.82503 0.78873 0.83425 1.90788 1.56766 1.47986 1.50150 1.21737 0.93820 1.06823 0.97564 1.21990 0.96633 1.05879 0.98474 1.23233 0.89305 1.02281 0.99152 1.46022 1.04587 1.36938 1.18161 1.21964 1.01466 0.90730 0.81656 1.22644 1.00741 1.02896 0.93557 1.22731 1.02728 0.79809 0.96048 1.87978 1.66558 1.26602 1.50474 1.22641 0.94273 1.00301 0.83757 1.22637 1.04200 0.92681 1.00683 1.73417 1.24323 1.12714 0.99981 1.42667 1.78354 1.10236 1.06332 1.19653 1.34135 0.94110 0.88341 0.90646 1.25527 1.03432 0.96927 1.01463 1.69829 1.53092 1.10191 1.29108 0.85134 0.76551 0.78324 0.80186 1.18933 1.22623 1.22088 0.90584 0.94665 0.93686 0.91180 0.87784 0.92497 0.94182 0.74782 0.82197 0.76358 0.86536 0.88909 0.88560 0.91338 0.86216 0.91204 0.87074 0.90310 0.90309 0.79714 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.49 71.98 0.68 -4.45 16 2 C 0.16 6.35 2.89 44.99 0.13 6.48 16 3 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 4 C -0.12 -3.56 4.87 30.60 0.15 -3.41 16 5 C 0.13 4.83 5.56 86.38 0.48 5.31 16 6 N -0.70 -22.33 5.55 -466.09 -2.59 -24.92 16 7 C 0.59 21.38 7.82 86.75 0.68 22.06 16 8 O -0.58 -25.90 16.93 -3.95 -0.07 -25.97 16 9 C -0.04 -1.19 7.13 42.45 0.30 -0.89 16 10 C -0.20 -4.87 10.81 22.41 0.24 -4.63 16 11 C 0.00 0.05 10.54 83.54 0.88 0.93 16 12 N -0.27 -4.51 3.23 -326.79 -1.05 -5.56 16 13 C 0.14 1.33 3.16 45.11 0.14 1.48 16 14 C -0.16 -0.74 5.10 30.69 0.16 -0.59 16 15 C 0.06 0.25 6.84 72.01 0.49 0.74 16 16 O -0.40 -3.55 10.77 -148.98 -1.60 -5.16 16 17 C 0.07 0.44 6.84 72.01 0.49 0.93 16 18 C -0.16 -1.46 5.75 30.69 0.18 -1.29 16 19 N -0.27 -6.39 11.67 -48.18 -0.56 -6.95 16 20 N -0.74 -37.43 4.57 -322.95 -1.48 -38.91 16 21 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 24 N -0.97 -61.76 13.06 21.65 0.28 -61.47 16 25 Si 0.97 48.20 29.55 68.60 2.03 50.23 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.84 7.75 -2.39 -0.02 1.82 16 36 H 0.42 10.72 8.20 -92.71 -0.76 9.96 16 37 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.22 1.51 7.08 -2.91 -0.02 1.49 16 39 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 0.35 6.90 -2.39 -0.02 0.34 16 41 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.37 20.51 7.80 -92.71 -0.72 19.79 16 49 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -80.20 402.87 0.74 -79.46 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.53 Total: 33.24 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.31 Total: 6.01 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -5.40 Total: -137.81 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.67 Total: -31.13 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -80.20 0.74 -79.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267128794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.607 kcal (2) G-P(sol) polarization free energy of solvation -80.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds