Wall clock time and date at job start Tue Mar 31 2020 20:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46951 * 2 1 4 4 C 1.53002 * 109.46861 * 119.99688 * 2 1 3 5 5 C 1.53001 * 109.47195 * 294.99941 * 4 2 1 6 6 C 1.50694 * 109.47340 * 179.97438 * 5 4 2 7 7 C 1.38222 * 120.01595 * 264.98166 * 6 5 4 8 8 C 1.38224 * 120.02676 * 180.02562 * 7 6 5 9 9 C 1.38266 * 120.05048 * 0.02562 * 8 7 6 10 10 C 1.38169 * 120.02533 * 359.97438 * 9 8 7 11 11 C 1.38434 * 120.01298 * 85.00144 * 6 5 4 12 12 F 1.35103 * 120.02456 * 359.95933 * 11 6 5 13 13 C 1.50698 * 109.47153 * 239.99728 * 2 1 3 14 14 O 1.21276 * 119.99718 * 263.61264 * 13 2 1 15 15 N 1.34779 * 119.99949 * 83.62257 * 13 2 1 16 16 C 1.46496 * 119.99786 * 184.26973 * 15 13 2 17 17 C 1.46504 * 120.00111 * 4.26487 * 15 13 2 18 18 H 1.08997 * 109.46943 * 354.46144 * 17 15 13 19 19 C 1.53000 * 109.47025 * 114.45618 * 17 15 13 20 20 C 1.52993 * 109.47059 * 234.46042 * 17 15 13 21 21 N 1.46493 * 109.47367 * 54.99975 * 20 17 15 22 22 C 1.36939 * 120.00029 * 180.02562 * 21 20 17 23 23 H 1.08001 * 120.00346 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00139 * 180.02562 * 22 21 20 25 25 N 1.31614 * 119.99939 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99734 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47095 * 90.00261 * 26 24 22 28 28 H 1.48507 * 109.47111 * 210.00281 * 26 24 22 29 29 H 1.48502 * 109.47271 * 330.00171 * 26 24 22 30 30 H 1.08991 * 109.47507 * 291.70533 * 1 2 3 31 31 H 1.09003 * 109.46808 * 51.70486 * 1 2 3 32 32 H 1.08999 * 109.46704 * 171.70274 * 1 2 3 33 33 H 1.09004 * 109.47027 * 175.00324 * 4 2 1 34 34 H 1.08991 * 109.47280 * 55.00155 * 4 2 1 35 35 H 1.09004 * 109.46821 * 60.00256 * 5 4 2 36 36 H 1.08997 * 109.47512 * 300.00545 * 5 4 2 37 37 H 1.08003 * 119.98453 * 0.03592 * 7 6 5 38 38 H 1.08000 * 119.97044 * 180.27513 * 8 7 6 39 39 H 1.07998 * 119.98250 * 179.97438 * 9 8 7 40 40 H 1.08004 * 120.00941 * 180.02562 * 10 9 8 41 41 H 1.09000 * 109.47105 * 84.66497 * 16 15 13 42 42 H 1.09002 * 109.47127 * 204.66364 * 16 15 13 43 43 H 1.08992 * 109.47474 * 324.66455 * 16 15 13 44 44 H 1.09002 * 109.47428 * 300.00393 * 19 17 15 45 45 H 1.09004 * 109.46700 * 60.00067 * 19 17 15 46 46 H 1.08995 * 109.47208 * 179.97438 * 19 17 15 47 47 H 1.09004 * 109.47112 * 175.00032 * 20 17 15 48 48 H 1.09006 * 109.47314 * 294.99673 * 20 17 15 49 49 H 0.97003 * 120.00376 * 0.02562 * 21 20 17 50 50 H 0.97008 * 119.99978 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.1369 -0.6416 3.7259 7 6 1.3064 -1.5089 4.4104 8 6 1.7661 -2.1604 5.5394 9 6 3.0570 -1.9450 5.9857 10 6 3.8890 -1.0785 5.3031 11 6 3.4297 -0.4257 4.1714 12 9 4.2425 0.4215 3.5030 13 6 2.0324 -0.7105 -1.2304 14 8 2.3446 -1.8808 -1.1698 15 7 2.1348 -0.0452 -2.3981 16 6 2.5334 -0.7577 -3.6145 17 6 1.8473 1.3904 -2.4509 18 1 1.4753 1.7223 -1.4817 19 6 3.1275 2.1545 -2.7946 20 6 0.7893 1.6595 -3.5228 21 7 -0.3934 0.8363 -3.2591 22 6 -1.4773 0.9081 -4.0929 23 1 -1.4604 1.5719 -4.9447 24 6 -2.5983 0.1284 -3.8428 25 7 -3.6402 0.1978 -4.6439 26 14 -2.6278 -1.0191 -2.3692 27 1 -3.1730 -0.2980 -1.1911 28 1 -3.4865 -2.1922 -2.6724 29 1 -1.2475 -1.4795 -2.0725 30 1 -0.3634 0.3800 0.9547 31 1 -0.3633 0.6369 -0.8066 32 1 -0.3633 -1.0169 -0.1483 33 1 3.1263 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 0.5489 0.1472 2.5389 36 1 2.0697 1.0676 2.4494 37 1 0.2978 -1.6777 4.0628 38 1 1.1179 -2.8413 6.0710 39 1 3.4149 -2.4544 6.8682 40 1 4.8973 -0.9108 5.6517 41 1 1.6568 -1.2197 -4.0687 42 1 2.9791 -0.0544 -4.3179 43 1 3.2608 -1.5291 -3.3619 44 1 3.8813 1.9627 -2.0310 45 1 3.4996 1.8225 -3.7639 46 1 2.9136 3.2225 -2.8344 47 1 0.5107 2.7131 -3.5019 48 1 1.1942 1.4102 -4.5037 49 1 -0.4088 0.2404 -2.4939 50 1 -4.4234 -0.3473 -4.4693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271102703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:18 Heat of formation + Delta-G solvation = -49.240724 kcal Electronic energy + Delta-G solvation = -30145.207844 eV Core-core repulsion = 26087.106094 eV Total energy + Delta-G solvation = -4058.101750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.08654 -40.21595 -39.32961 -36.91826 -35.77178 -34.02834 -32.54481 -31.63133 -30.80742 -30.47259 -28.64779 -26.99979 -26.02297 -25.17660 -23.08442 -22.68578 -22.23605 -21.30824 -20.73741 -18.67783 -17.86108 -17.47112 -17.29445 -16.70319 -16.15387 -15.76588 -15.55715 -15.34064 -14.73932 -14.64135 -14.46118 -14.16394 -14.01929 -13.75330 -13.51378 -13.14660 -13.09858 -12.93302 -12.72503 -12.64004 -12.54825 -12.22783 -12.11213 -12.00733 -11.88920 -11.74323 -11.69330 -11.42876 -11.30800 -11.09479 -10.88996 -10.79479 -10.74256 -10.47989 -10.09949 -9.61285 -9.43842 -9.22005 -8.95754 -8.88150 -8.37782 -7.28456 -5.81089 -3.16843 0.87881 0.92037 2.86127 3.19554 3.32164 3.32557 3.37822 3.42671 4.01359 4.33488 4.44568 4.52698 4.55055 4.65641 4.80336 4.84096 4.95372 4.98183 5.08743 5.14805 5.25861 5.29503 5.31967 5.41985 5.47409 5.49729 5.59780 5.65437 5.70225 5.76038 5.79515 5.81799 5.84113 5.87329 5.91170 5.91437 5.97480 6.09290 6.15427 6.17834 6.23069 6.25367 6.37046 6.40562 6.52575 6.62255 6.79301 7.63122 7.95050 8.37605 8.41741 9.17033 9.89143 10.08351 11.36992 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003312 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.156519 B = 8452.100131 C = 9725.357293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.092 4.092 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.089 4.089 8 C -0.128 4.128 9 C -0.099 4.099 10 C -0.154 4.154 11 C 0.099 3.901 12 F -0.137 7.137 13 C 0.519 3.481 14 O -0.546 6.546 15 N -0.599 5.599 16 C 0.089 3.911 17 C 0.113 3.887 18 H 0.094 0.906 19 C -0.159 4.159 20 C 0.145 3.855 21 N -0.754 5.754 22 C -0.244 4.244 23 H 0.091 0.909 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.870 3.130 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.272 1.272 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.032 0.968 49 H 0.364 0.636 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.658 0.725 19.139 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.131 4.131 3 H 0.112 0.888 4 C -0.130 4.130 5 C -0.122 4.122 6 C -0.109 4.109 7 C -0.107 4.107 8 C -0.147 4.147 9 C -0.117 4.117 10 C -0.173 4.173 11 C 0.080 3.920 12 F -0.116 7.116 13 C 0.307 3.693 14 O -0.424 6.424 15 N -0.331 5.331 16 C -0.054 4.054 17 C 0.009 3.991 18 H 0.112 0.888 19 C -0.218 4.218 20 C 0.017 3.983 21 N -0.402 5.402 22 C -0.374 4.374 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.700 3.300 27 H -0.207 1.207 28 H -0.217 1.217 29 H -0.198 1.198 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.199 0.801 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.709 0.202 18.918 24.591 hybrid contribution -0.067 -0.684 0.736 1.007 sum 15.643 -0.482 19.653 25.123 Atomic orbital electron populations 1.22148 0.92446 1.03743 1.03533 1.21346 0.98019 1.00621 0.93161 0.88815 1.21354 1.01376 0.99417 0.90859 1.20691 1.02042 0.98740 0.90753 1.19993 0.92749 0.99769 0.98424 1.21040 0.99883 0.95082 0.94669 1.21227 0.96165 1.00259 0.97014 1.20995 0.93689 0.97410 0.99622 1.21144 1.01363 0.99173 0.95630 1.17596 0.88691 0.92773 0.92973 1.91494 1.72057 1.68412 1.79622 1.20551 0.77282 0.87034 0.84457 1.90648 1.49840 1.16523 1.85381 1.47803 1.67408 1.09288 1.08630 1.21548 1.00675 0.96903 0.86224 1.21696 0.95842 0.79804 1.01736 0.88795 1.22105 0.96948 1.00483 1.02236 1.21016 0.86620 0.95313 0.95326 1.42809 1.14594 1.49964 1.32810 1.19040 0.91304 1.20726 1.06355 0.89110 1.24637 0.96273 0.99619 0.98301 1.69688 1.05671 1.43840 1.38785 0.86836 0.77626 0.81640 0.83930 1.20685 1.21714 1.19780 0.90876 0.90683 0.91700 0.91491 0.90534 0.89719 0.90400 0.84870 0.85347 0.85193 0.84893 0.92000 0.91226 0.91507 0.92420 0.91935 0.91042 0.94196 0.94997 0.80119 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 7.97 37.16 0.30 -2.19 16 2 C -0.11 -1.56 1.86 -91.77 -0.17 -1.73 16 3 H 0.09 1.12 6.31 -51.93 -0.33 0.79 16 4 C -0.09 -1.19 4.09 -26.73 -0.11 -1.30 16 5 C -0.09 -0.90 4.89 -27.89 -0.14 -1.03 16 6 C -0.11 -1.14 5.14 -104.56 -0.54 -1.68 16 7 C -0.09 -0.82 9.68 -39.59 -0.38 -1.20 16 8 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 9 C -0.10 -0.76 10.04 -39.60 -0.40 -1.15 16 10 C -0.15 -1.38 10.03 -39.52 -0.40 -1.77 16 11 C 0.10 1.07 7.24 -39.42 -0.29 0.79 16 12 F -0.14 -1.63 16.57 2.25 0.04 -1.59 16 13 C 0.52 9.03 6.78 -10.99 -0.07 8.96 16 14 O -0.55 -11.16 15.82 5.56 0.09 -11.08 16 15 N -0.60 -9.75 2.20 -173.94 -0.38 -10.14 16 16 C 0.09 1.40 9.39 59.84 0.56 1.97 16 17 C 0.11 1.62 2.49 -67.93 -0.17 1.46 16 18 H 0.09 1.27 4.91 -51.93 -0.25 1.01 16 19 C -0.16 -1.74 9.26 37.16 0.34 -1.40 16 20 C 0.15 2.62 5.45 -4.05 -0.02 2.59 16 21 N -0.75 -17.35 5.14 -59.91 -0.31 -17.66 16 22 C -0.24 -6.81 10.47 -15.06 -0.16 -6.96 16 23 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 26 Si 0.87 22.21 26.55 -169.99 -4.51 17.70 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 29 H -0.27 -6.73 5.67 56.52 0.32 -6.41 16 30 H 0.07 0.90 6.22 -51.93 -0.32 0.58 16 31 H 0.07 1.31 4.99 -51.93 -0.26 1.05 16 32 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 35 H 0.08 0.81 6.31 -51.93 -0.33 0.48 16 36 H 0.08 0.78 7.79 -51.93 -0.40 0.37 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 43 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.67 6.93 -51.93 -0.36 0.31 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 49 H 0.36 8.23 2.53 -40.82 -0.10 8.12 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -34.28 392.49 -8.23 -42.51 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.71 Total: 8.74 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.13 Total: -5.94 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.08 Total: -56.26 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.51 Total: 17.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.28 -8.23 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271102703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.727 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds