Wall clock time and date at job start Tue Mar 31 2020 20:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46951 * 2 1 4 4 C 1.53002 * 109.46861 * 119.99688 * 2 1 3 5 5 C 1.53001 * 109.47195 * 294.99941 * 4 2 1 6 6 C 1.50694 * 109.47340 * 179.97438 * 5 4 2 7 7 C 1.38222 * 120.01595 * 264.98166 * 6 5 4 8 8 C 1.38224 * 120.02676 * 180.02562 * 7 6 5 9 9 C 1.38266 * 120.05048 * 0.02562 * 8 7 6 10 10 C 1.38169 * 120.02533 * 359.97438 * 9 8 7 11 11 C 1.38434 * 120.01298 * 85.00144 * 6 5 4 12 12 F 1.35103 * 120.02456 * 359.95933 * 11 6 5 13 13 C 1.50698 * 109.47153 * 239.99728 * 2 1 3 14 14 O 1.21276 * 119.99718 * 263.61264 * 13 2 1 15 15 N 1.34779 * 119.99949 * 83.62257 * 13 2 1 16 16 C 1.46496 * 119.99786 * 184.26973 * 15 13 2 17 17 C 1.46504 * 120.00111 * 4.26487 * 15 13 2 18 18 H 1.08997 * 109.46943 * 354.46144 * 17 15 13 19 19 C 1.53000 * 109.47025 * 114.45618 * 17 15 13 20 20 C 1.52993 * 109.47059 * 234.46042 * 17 15 13 21 21 N 1.46493 * 109.47367 * 54.99975 * 20 17 15 22 22 C 1.36939 * 120.00029 * 180.02562 * 21 20 17 23 23 H 1.08001 * 120.00346 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00139 * 180.02562 * 22 21 20 25 25 N 1.31614 * 119.99939 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99734 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47095 * 90.00261 * 26 24 22 28 28 H 1.48507 * 109.47111 * 210.00281 * 26 24 22 29 29 H 1.48502 * 109.47271 * 330.00171 * 26 24 22 30 30 H 1.08991 * 109.47507 * 291.70533 * 1 2 3 31 31 H 1.09003 * 109.46808 * 51.70486 * 1 2 3 32 32 H 1.08999 * 109.46704 * 171.70274 * 1 2 3 33 33 H 1.09004 * 109.47027 * 175.00324 * 4 2 1 34 34 H 1.08991 * 109.47280 * 55.00155 * 4 2 1 35 35 H 1.09004 * 109.46821 * 60.00256 * 5 4 2 36 36 H 1.08997 * 109.47512 * 300.00545 * 5 4 2 37 37 H 1.08003 * 119.98453 * 0.03592 * 7 6 5 38 38 H 1.08000 * 119.97044 * 180.27513 * 8 7 6 39 39 H 1.07998 * 119.98250 * 179.97438 * 9 8 7 40 40 H 1.08004 * 120.00941 * 180.02562 * 10 9 8 41 41 H 1.09000 * 109.47105 * 84.66497 * 16 15 13 42 42 H 1.09002 * 109.47127 * 204.66364 * 16 15 13 43 43 H 1.08992 * 109.47474 * 324.66455 * 16 15 13 44 44 H 1.09002 * 109.47428 * 300.00393 * 19 17 15 45 45 H 1.09004 * 109.46700 * 60.00067 * 19 17 15 46 46 H 1.08995 * 109.47208 * 179.97438 * 19 17 15 47 47 H 1.09004 * 109.47112 * 175.00032 * 20 17 15 48 48 H 1.09006 * 109.47314 * 294.99673 * 20 17 15 49 49 H 0.97003 * 120.00376 * 0.02562 * 21 20 17 50 50 H 0.97008 * 119.99978 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.1369 -0.6416 3.7259 7 6 1.3064 -1.5089 4.4104 8 6 1.7661 -2.1604 5.5394 9 6 3.0570 -1.9450 5.9857 10 6 3.8890 -1.0785 5.3031 11 6 3.4297 -0.4257 4.1714 12 9 4.2425 0.4215 3.5030 13 6 2.0324 -0.7105 -1.2304 14 8 2.3446 -1.8808 -1.1698 15 7 2.1348 -0.0452 -2.3981 16 6 2.5334 -0.7577 -3.6145 17 6 1.8473 1.3904 -2.4509 18 1 1.4753 1.7223 -1.4817 19 6 3.1275 2.1545 -2.7946 20 6 0.7893 1.6595 -3.5228 21 7 -0.3934 0.8363 -3.2591 22 6 -1.4773 0.9081 -4.0929 23 1 -1.4604 1.5719 -4.9447 24 6 -2.5983 0.1284 -3.8428 25 7 -3.6402 0.1978 -4.6439 26 14 -2.6278 -1.0191 -2.3692 27 1 -3.1730 -0.2980 -1.1911 28 1 -3.4865 -2.1922 -2.6724 29 1 -1.2475 -1.4795 -2.0725 30 1 -0.3634 0.3800 0.9547 31 1 -0.3633 0.6369 -0.8066 32 1 -0.3633 -1.0169 -0.1483 33 1 3.1263 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 0.5489 0.1472 2.5389 36 1 2.0697 1.0676 2.4494 37 1 0.2978 -1.6777 4.0628 38 1 1.1179 -2.8413 6.0710 39 1 3.4149 -2.4544 6.8682 40 1 4.8973 -0.9108 5.6517 41 1 1.6568 -1.2197 -4.0687 42 1 2.9791 -0.0544 -4.3179 43 1 3.2608 -1.5291 -3.3619 44 1 3.8813 1.9627 -2.0310 45 1 3.4996 1.8225 -3.7639 46 1 2.9136 3.2225 -2.8344 47 1 0.5107 2.7131 -3.5019 48 1 1.1942 1.4102 -4.5037 49 1 -0.4088 0.2404 -2.4939 50 1 -4.4234 -0.3473 -4.4693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271102703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:17 Heat of formation + Delta-G solvation = -68.903467 kcal Electronic energy + Delta-G solvation = -30146.060484 eV Core-core repulsion = 26087.106094 eV Total energy + Delta-G solvation = -4058.954391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.87920 -41.49350 -40.01737 -38.30467 -36.83339 -35.86874 -33.48199 -33.40659 -31.95737 -31.45219 -29.56168 -28.25147 -27.61918 -26.16986 -24.23981 -23.76450 -23.47678 -22.51339 -21.72005 -20.25823 -19.20036 -18.72810 -18.35669 -17.43985 -17.16770 -16.73584 -16.65840 -16.56005 -16.48112 -15.96564 -15.60341 -15.38744 -15.09072 -14.85919 -14.63535 -14.48249 -14.23848 -14.08555 -13.89257 -13.84027 -13.63186 -13.59699 -13.25757 -13.18736 -12.95407 -12.90016 -12.85172 -12.66404 -12.60469 -12.36056 -12.20353 -12.11082 -11.89390 -11.80912 -11.66786 -11.58321 -11.03496 -10.75261 -9.89161 -9.71547 -9.58005 -9.31393 -8.07123 -5.38186 0.20596 0.27350 1.26316 1.32128 1.35812 1.52235 1.98473 2.40474 2.65073 3.24585 3.33046 3.34929 3.49865 3.58368 3.72607 3.82097 3.90825 3.97555 4.09402 4.15126 4.26258 4.27918 4.34075 4.36788 4.42052 4.45393 4.49737 4.57133 4.60609 4.75500 4.80626 4.82459 4.85358 4.89495 4.93900 4.95727 5.00929 5.08764 5.11968 5.16875 5.25091 5.29096 5.32123 5.45025 5.50485 5.52615 5.74819 5.98169 6.17569 6.35153 7.05113 7.09317 7.82787 7.99767 9.14363 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003312 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.156519 B = 8452.100131 C = 9725.357293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.082 4.082 5 C -0.079 4.079 6 C -0.125 4.125 7 C -0.100 4.100 8 C -0.129 4.129 9 C -0.097 4.097 10 C -0.161 4.161 11 C 0.073 3.927 12 F -0.149 7.149 13 C 0.507 3.493 14 O -0.585 6.585 15 N -0.601 5.601 16 C 0.089 3.911 17 C 0.117 3.883 18 H 0.108 0.892 19 C -0.151 4.151 20 C 0.138 3.862 21 N -0.758 5.758 22 C -0.224 4.224 23 H 0.065 0.935 24 C -0.058 4.058 25 N -0.980 5.980 26 Si 0.929 3.071 27 H -0.261 1.261 28 H -0.302 1.302 29 H -0.266 1.266 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.030 0.970 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.053 0.947 48 H 0.031 0.969 49 H 0.367 0.633 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.138 1.477 21.858 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.124 4.124 3 H 0.140 0.860 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.147 4.147 9 C -0.115 4.115 10 C -0.180 4.180 11 C 0.054 3.946 12 F -0.128 7.128 13 C 0.297 3.703 14 O -0.465 6.465 15 N -0.333 5.333 16 C -0.053 4.053 17 C 0.014 3.986 18 H 0.126 0.874 19 C -0.210 4.210 20 C 0.011 3.989 21 N -0.406 5.406 22 C -0.355 4.355 23 H 0.083 0.917 24 C -0.249 4.249 25 N -0.631 5.631 26 Si 0.758 3.242 27 H -0.186 1.186 28 H -0.229 1.229 29 H -0.192 1.192 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.165 0.835 41 H 0.049 0.951 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.202 0.798 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.240 1.001 21.651 27.695 hybrid contribution -0.456 -0.894 -0.161 1.016 sum 16.784 0.108 21.490 27.268 Atomic orbital electron populations 1.22142 0.93088 1.01940 1.04606 1.21379 0.97213 1.01836 0.92006 0.86019 1.21226 1.00399 0.98815 0.91540 1.20629 1.02733 0.98581 0.89609 1.20076 0.93053 1.00666 0.98814 1.21290 1.00352 0.94997 0.95173 1.21589 0.96672 0.99936 0.96497 1.21382 0.93373 0.96622 1.00098 1.21431 1.02371 0.99040 0.95138 1.17913 0.89023 0.93675 0.94023 1.91453 1.72402 1.68931 1.80026 1.21228 0.76687 0.86803 0.85609 1.90623 1.51550 1.18256 1.86114 1.47995 1.66697 1.10156 1.08442 1.21534 0.99399 0.97696 0.86706 1.21810 0.96555 0.79116 1.01131 0.87448 1.22068 0.95020 1.01086 1.02780 1.21281 0.85845 0.95022 0.96710 1.42878 1.14904 1.50712 1.32113 1.19069 0.92340 1.18617 1.05471 0.91710 1.25317 0.96342 1.01977 1.01301 1.69844 1.06565 1.45600 1.41126 0.85886 0.77566 0.79366 0.81412 1.18614 1.22938 1.19195 0.87532 0.92588 0.94066 0.92621 0.92344 0.88554 0.89741 0.83856 0.82940 0.82341 0.83477 0.95100 0.88450 0.91524 0.91131 0.91630 0.88924 0.92904 0.95084 0.79765 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 7.97 71.98 0.57 -4.04 16 2 C -0.10 -2.73 1.86 -11.54 -0.02 -2.75 16 3 H 0.12 2.51 6.31 -2.39 -0.02 2.50 16 4 C -0.08 -2.02 4.09 30.60 0.13 -1.90 16 5 C -0.08 -1.51 4.89 29.85 0.15 -1.36 16 6 C -0.13 -2.47 5.14 -19.82 -0.10 -2.57 16 7 C -0.10 -1.66 9.68 22.26 0.22 -1.44 16 8 C -0.13 -1.70 10.04 22.27 0.22 -1.48 16 9 C -0.10 -1.22 10.04 22.26 0.22 -1.00 16 10 C -0.16 -2.59 10.03 22.31 0.22 -2.37 16 11 C 0.07 1.50 7.24 22.37 0.16 1.66 16 12 F -0.15 -3.44 16.57 44.97 0.75 -2.69 16 13 C 0.51 17.22 6.78 87.66 0.59 17.81 16 14 O -0.58 -24.05 15.82 -3.02 -0.05 -24.10 16 15 N -0.60 -18.74 2.20 -822.63 -1.81 -20.56 16 16 C 0.09 2.77 9.39 127.77 1.20 3.97 16 17 C 0.12 3.05 2.49 44.99 0.11 3.16 16 18 H 0.11 2.54 4.91 -2.39 -0.01 2.53 16 19 C -0.15 -2.75 9.26 71.98 0.67 -2.08 16 20 C 0.14 4.72 5.45 86.38 0.47 5.19 16 21 N -0.76 -34.32 5.14 -343.46 -1.76 -36.08 16 22 C -0.22 -12.56 10.47 84.03 0.88 -11.68 16 23 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 24 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 25 N -0.98 -63.06 13.97 21.65 0.30 -62.75 16 26 Si 0.93 46.58 26.55 68.60 1.82 48.40 16 27 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 29 H -0.27 -12.91 5.67 99.48 0.56 -12.35 16 30 H 0.11 2.29 6.22 -2.39 -0.01 2.28 16 31 H 0.06 1.83 4.99 -2.39 -0.01 1.82 16 32 H 0.04 1.37 7.02 -2.39 -0.02 1.35 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.64 8.04 -2.39 -0.02 1.63 16 35 H 0.10 1.58 6.31 -2.39 -0.02 1.56 16 36 H 0.08 1.50 7.79 -2.39 -0.02 1.48 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 39 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 2.40 6.57 -2.39 -0.02 2.39 16 43 H 0.07 2.05 7.53 -2.39 -0.02 2.03 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.17 6.93 -2.38 -0.02 1.16 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 48 H 0.03 1.09 7.59 -2.38 -0.02 1.07 16 49 H 0.37 16.23 2.53 -92.71 -0.23 16.00 16 50 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -76.84 392.49 5.97 -70.87 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.57 Total: 30.74 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 6.16 Total: -3.82 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -3.27 Total: -119.39 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.75 Total: -2.69 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.82 Total: 48.40 kcal Total: -76.84 5.97 -70.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271102703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.967 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds