Wall clock time and date at job start Tue Mar 31 2020 20:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46719 * 2 1 4 4 C 1.52993 * 109.46974 * 240.00425 * 2 1 3 5 5 C 1.53001 * 109.47523 * 64.99857 * 4 2 1 6 6 C 1.50696 * 109.47556 * 179.97438 * 5 4 2 7 7 C 1.38221 * 120.01004 * 99.99595 * 6 5 4 8 8 C 1.38229 * 120.02594 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.04920 * 359.97438 * 8 7 6 10 10 C 1.38175 * 120.02891 * 0.02562 * 9 8 7 11 11 C 1.38435 * 120.01469 * 280.00255 * 6 5 4 12 12 F 1.35093 * 120.02480 * 0.02562 * 11 6 5 13 13 C 1.50697 * 109.47057 * 120.00251 * 2 1 3 14 14 O 1.21281 * 119.99960 * 120.00110 * 13 2 1 15 15 N 1.34774 * 119.99937 * 300.00037 * 13 2 1 16 16 C 1.46502 * 120.00052 * 0.02562 * 15 13 2 17 17 C 1.46501 * 119.99820 * 180.02562 * 15 13 2 18 18 H 1.09002 * 109.47217 * 359.97438 * 17 15 13 19 19 C 1.53001 * 109.47064 * 239.99922 * 17 15 13 20 20 C 1.52997 * 109.47243 * 120.00269 * 17 15 13 21 21 N 1.46504 * 109.46866 * 304.99605 * 20 17 15 22 22 C 1.36941 * 119.99961 * 180.02562 * 21 20 17 23 23 H 1.07996 * 120.00024 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99678 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00572 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99808 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46986 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47433 * 119.99713 * 26 24 22 29 29 H 1.48495 * 109.47375 * 239.99942 * 26 24 22 30 30 H 1.08996 * 109.47403 * 59.99945 * 1 2 3 31 31 H 1.09006 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47184 * 299.99428 * 1 2 3 33 33 H 1.09001 * 109.47398 * 304.99825 * 4 2 1 34 34 H 1.09001 * 109.47279 * 185.00000 * 4 2 1 35 35 H 1.09001 * 109.46810 * 59.99608 * 5 4 2 36 36 H 1.09001 * 109.46960 * 300.00339 * 5 4 2 37 37 H 1.08002 * 119.98827 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.97486 * 180.02562 * 8 7 6 39 39 H 1.07998 * 119.99008 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.01835 * 179.74986 * 10 9 8 41 41 H 1.08996 * 109.47043 * 90.00472 * 16 15 13 42 42 H 1.09011 * 109.46795 * 209.99742 * 16 15 13 43 43 H 1.08996 * 109.47260 * 329.99520 * 16 15 13 44 44 H 1.08999 * 109.47053 * 59.99867 * 19 17 15 45 45 H 1.09003 * 109.47731 * 179.97438 * 19 17 15 46 46 H 1.08999 * 109.47226 * 300.00465 * 19 17 15 47 47 H 1.09000 * 109.47521 * 64.99661 * 20 17 15 48 48 H 1.09000 * 109.47441 * 185.00237 * 20 17 15 49 49 H 0.96998 * 119.99866 * 0.02562 * 21 20 17 50 50 H 0.96993 * 119.99811 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6353 0.0691 -2.4953 6 6 2.1381 -0.6409 -3.7258 7 6 1.2790 -1.4280 -4.4694 8 6 1.7400 -2.0798 -5.5978 9 6 3.0606 -1.9449 -5.9843 10 6 3.9213 -1.1586 -5.2426 11 6 3.4606 -0.5052 -4.1118 12 9 4.3013 0.2633 -3.3854 13 6 2.0324 -0.7105 1.2304 14 8 2.7297 -1.6965 1.1191 15 7 1.7068 -0.2500 2.4545 16 6 0.8641 0.9408 2.5890 17 6 2.1956 -0.9404 3.6506 18 1 2.8011 -1.7968 3.3539 19 6 1.0059 -1.4217 4.4837 20 6 3.0453 0.0216 4.4833 21 7 4.1156 0.5745 3.6496 22 6 5.0084 1.4652 4.1833 23 1 4.9238 1.7598 5.2189 24 6 6.0222 1.9894 3.3932 25 7 6.1251 1.6307 2.1310 26 14 7.2405 3.2038 4.1213 27 1 6.9102 3.4402 5.5498 28 1 8.6143 2.6499 4.0167 29 1 7.1660 4.4865 3.3768 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 3.1264 -0.7994 -1.2056 35 1 2.0699 1.0676 -2.4493 36 1 0.5489 0.1473 -2.5389 37 1 0.2471 -1.5338 -4.1686 38 1 1.0679 -2.6943 -6.1784 39 1 3.4197 -2.4542 -6.8664 40 1 4.9538 -1.0565 -5.5424 41 1 -0.1837 0.6424 2.6225 42 1 1.1218 1.4663 3.5086 43 1 1.0272 1.5995 1.7361 44 1 0.4005 -2.1070 3.8905 45 1 1.3695 -1.9357 5.3735 46 1 0.4000 -0.5655 4.7803 47 1 2.4182 0.8323 4.8543 48 1 3.4815 -0.5150 5.3259 49 1 4.1918 0.3096 2.7196 50 1 6.8337 1.9968 1.5791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271102707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:32 Heat of formation + Delta-G solvation = -52.985307 kcal Electronic energy + Delta-G solvation = -29792.559465 eV Core-core repulsion = 25734.295338 eV Total energy + Delta-G solvation = -4058.264127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.80012 -39.98375 -39.16766 -36.59782 -35.44430 -33.99598 -32.70141 -31.36442 -30.63181 -29.97577 -28.19665 -26.71765 -25.60902 -25.12394 -23.16751 -22.84523 -22.33540 -21.14242 -19.95019 -18.55966 -17.61976 -17.02523 -16.84668 -16.50440 -16.11510 -15.59991 -15.48042 -15.15992 -14.71985 -14.47385 -14.32901 -13.90783 -13.62084 -13.47653 -13.23734 -13.21243 -12.99708 -12.82835 -12.59961 -12.42885 -12.22774 -12.14024 -12.04744 -12.01490 -11.76989 -11.48622 -11.44068 -11.21569 -11.09936 -10.82718 -10.74053 -10.62524 -10.50839 -10.39218 -9.97799 -9.65468 -9.20859 -9.06680 -8.82519 -8.69712 -8.15982 -6.84640 -5.68211 -2.97828 1.04551 1.07236 3.13683 3.37915 3.46386 3.49063 3.51640 3.54373 4.23044 4.49766 4.61738 4.63174 4.74754 4.78186 4.98426 5.06700 5.11037 5.21069 5.25668 5.35681 5.40593 5.47046 5.48608 5.56737 5.58995 5.63633 5.67037 5.72912 5.80345 5.85964 5.89079 5.94885 5.97489 6.00188 6.07293 6.11214 6.17039 6.20473 6.23709 6.25148 6.40849 6.43925 6.51384 6.56868 6.78384 6.79218 7.08148 7.74834 7.85821 8.49038 8.68234 9.60512 10.19706 10.55150 11.53761 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003337 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.220261 B = 8387.789027 C =10447.893432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 H 0.100 0.900 4 C -0.092 4.092 5 C -0.082 4.082 6 C -0.110 4.110 7 C -0.091 4.091 8 C -0.133 4.133 9 C -0.099 4.099 10 C -0.155 4.155 11 C 0.105 3.895 12 F -0.130 7.130 13 C 0.524 3.476 14 O -0.541 6.541 15 N -0.597 5.597 16 C 0.082 3.918 17 C 0.125 3.875 18 H 0.099 0.901 19 C -0.153 4.153 20 C 0.144 3.856 21 N -0.728 5.728 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.927 5.927 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.020 0.980 48 H 0.027 0.973 49 H 0.387 0.613 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -5.429 -12.770 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.129 4.129 3 H 0.118 0.882 4 C -0.130 4.130 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.109 4.109 8 C -0.151 4.151 9 C -0.117 4.117 10 C -0.173 4.173 11 C 0.085 3.915 12 F -0.108 7.108 13 C 0.312 3.688 14 O -0.417 6.417 15 N -0.329 5.329 16 C -0.061 4.061 17 C 0.021 3.979 18 H 0.117 0.883 19 C -0.212 4.212 20 C 0.015 3.985 21 N -0.372 5.372 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.575 5.575 26 Si 0.736 3.264 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.037 0.963 48 H 0.044 0.956 49 H 0.221 0.779 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.103 -5.814 -12.665 21.296 hybrid contribution 1.048 0.888 0.234 1.394 sum -15.055 -4.925 -12.431 20.136 Atomic orbital electron populations 1.22089 0.93523 1.02577 1.03091 1.21243 0.96986 1.01416 0.93262 0.88170 1.21326 1.02720 0.98315 0.90612 1.20660 1.01248 0.99053 0.90954 1.20014 0.92359 1.00302 0.98434 1.20953 0.99566 0.95844 0.94531 1.21169 0.95977 1.00530 0.97445 1.20973 0.93409 0.97893 0.99471 1.21195 1.01324 0.99462 0.95354 1.17668 0.87953 0.94052 0.91801 1.91566 1.70284 1.72611 1.76367 1.20470 0.79614 0.84377 0.84374 1.90675 1.37684 1.27054 1.86319 1.47630 1.51035 1.28711 1.05553 1.21826 0.93014 0.87565 1.03736 1.21360 0.94950 0.96618 0.84947 0.88331 1.22041 0.98155 1.01074 0.99914 1.20995 0.90153 0.94026 0.93328 1.42313 1.31259 1.52324 1.11330 1.19239 1.05758 1.17019 0.95183 0.91307 1.24748 0.99391 1.00850 0.95903 1.69697 1.34728 1.47318 1.05774 0.86160 0.81440 0.80863 0.77966 1.20653 1.21912 1.21946 0.91667 0.92446 0.91020 0.91383 0.90459 0.90364 0.90307 0.85178 0.85567 0.85306 0.84814 0.93181 0.90672 0.91099 0.92772 0.91565 0.92483 0.96264 0.95576 0.77917 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.58 37.16 0.32 -1.29 16 2 C -0.11 -1.55 1.92 -91.77 -0.18 -1.72 16 3 H 0.10 1.49 7.40 -51.93 -0.38 1.10 16 4 C -0.09 -1.33 4.01 -26.73 -0.11 -1.44 16 5 C -0.08 -0.96 4.82 -27.88 -0.13 -1.09 16 6 C -0.11 -1.32 5.14 -104.56 -0.54 -1.86 16 7 C -0.09 -0.88 9.67 -39.59 -0.38 -1.26 16 8 C -0.13 -1.15 10.04 -39.58 -0.40 -1.54 16 9 C -0.10 -0.90 10.04 -39.60 -0.40 -1.30 16 10 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 11 C 0.10 1.41 7.24 -39.42 -0.29 1.12 16 12 F -0.13 -2.10 16.66 2.25 0.04 -2.07 16 13 C 0.52 9.61 6.78 -10.99 -0.07 9.54 16 14 O -0.54 -12.07 15.25 5.56 0.08 -11.99 16 15 N -0.60 -10.05 2.24 -173.93 -0.39 -10.44 16 16 C 0.08 1.10 7.86 59.85 0.47 1.57 16 17 C 0.12 2.20 2.80 -67.93 -0.19 2.01 16 18 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 19 C -0.15 -2.02 9.19 37.16 0.34 -1.68 16 20 C 0.14 2.97 5.50 -4.04 -0.02 2.95 16 21 N -0.73 -19.25 5.43 -59.91 -0.33 -19.57 16 22 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 26 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.68 4.53 -51.93 -0.24 0.44 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.40 7.96 -51.93 -0.41 0.99 16 35 H 0.08 0.97 7.95 -51.93 -0.41 0.55 16 36 H 0.08 0.71 6.43 -51.93 -0.33 0.38 16 37 H 0.13 0.96 8.04 -52.49 -0.42 0.53 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.05 0.52 6.95 -51.93 -0.36 0.16 16 42 H 0.07 1.08 6.53 -51.92 -0.34 0.74 16 43 H 0.07 0.91 6.01 -51.93 -0.31 0.60 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 47 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.39 11.13 7.06 -40.82 -0.29 10.84 16 50 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -35.32 400.54 -8.96 -44.28 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.88 Total: 9.90 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.22 Total: -5.65 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.01 Total: -58.49 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.32 -8.96 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271102707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.709 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds