Wall clock time and date at job start Tue Mar 31 2020 20:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46719 * 2 1 4 4 C 1.52993 * 109.46974 * 240.00425 * 2 1 3 5 5 C 1.53001 * 109.47523 * 64.99857 * 4 2 1 6 6 C 1.50696 * 109.47556 * 179.97438 * 5 4 2 7 7 C 1.38221 * 120.01004 * 99.99595 * 6 5 4 8 8 C 1.38229 * 120.02594 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.04920 * 359.97438 * 8 7 6 10 10 C 1.38175 * 120.02891 * 0.02562 * 9 8 7 11 11 C 1.38435 * 120.01469 * 280.00255 * 6 5 4 12 12 F 1.35093 * 120.02480 * 0.02562 * 11 6 5 13 13 C 1.50697 * 109.47057 * 120.00251 * 2 1 3 14 14 O 1.21281 * 119.99960 * 120.00110 * 13 2 1 15 15 N 1.34774 * 119.99937 * 300.00037 * 13 2 1 16 16 C 1.46502 * 120.00052 * 0.02562 * 15 13 2 17 17 C 1.46501 * 119.99820 * 180.02562 * 15 13 2 18 18 H 1.09002 * 109.47217 * 359.97438 * 17 15 13 19 19 C 1.53001 * 109.47064 * 239.99922 * 17 15 13 20 20 C 1.52997 * 109.47243 * 120.00269 * 17 15 13 21 21 N 1.46504 * 109.46866 * 304.99605 * 20 17 15 22 22 C 1.36941 * 119.99961 * 180.02562 * 21 20 17 23 23 H 1.07996 * 120.00024 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99678 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00572 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99808 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46986 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47433 * 119.99713 * 26 24 22 29 29 H 1.48495 * 109.47375 * 239.99942 * 26 24 22 30 30 H 1.08996 * 109.47403 * 59.99945 * 1 2 3 31 31 H 1.09006 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47184 * 299.99428 * 1 2 3 33 33 H 1.09001 * 109.47398 * 304.99825 * 4 2 1 34 34 H 1.09001 * 109.47279 * 185.00000 * 4 2 1 35 35 H 1.09001 * 109.46810 * 59.99608 * 5 4 2 36 36 H 1.09001 * 109.46960 * 300.00339 * 5 4 2 37 37 H 1.08002 * 119.98827 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.97486 * 180.02562 * 8 7 6 39 39 H 1.07998 * 119.99008 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.01835 * 179.74986 * 10 9 8 41 41 H 1.08996 * 109.47043 * 90.00472 * 16 15 13 42 42 H 1.09011 * 109.46795 * 209.99742 * 16 15 13 43 43 H 1.08996 * 109.47260 * 329.99520 * 16 15 13 44 44 H 1.08999 * 109.47053 * 59.99867 * 19 17 15 45 45 H 1.09003 * 109.47731 * 179.97438 * 19 17 15 46 46 H 1.08999 * 109.47226 * 300.00465 * 19 17 15 47 47 H 1.09000 * 109.47521 * 64.99661 * 20 17 15 48 48 H 1.09000 * 109.47441 * 185.00237 * 20 17 15 49 49 H 0.96998 * 119.99866 * 0.02562 * 21 20 17 50 50 H 0.96993 * 119.99811 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6353 0.0691 -2.4953 6 6 2.1381 -0.6409 -3.7258 7 6 1.2790 -1.4280 -4.4694 8 6 1.7400 -2.0798 -5.5978 9 6 3.0606 -1.9449 -5.9843 10 6 3.9213 -1.1586 -5.2426 11 6 3.4606 -0.5052 -4.1118 12 9 4.3013 0.2633 -3.3854 13 6 2.0324 -0.7105 1.2304 14 8 2.7297 -1.6965 1.1191 15 7 1.7068 -0.2500 2.4545 16 6 0.8641 0.9408 2.5890 17 6 2.1956 -0.9404 3.6506 18 1 2.8011 -1.7968 3.3539 19 6 1.0059 -1.4217 4.4837 20 6 3.0453 0.0216 4.4833 21 7 4.1156 0.5745 3.6496 22 6 5.0084 1.4652 4.1833 23 1 4.9238 1.7598 5.2189 24 6 6.0222 1.9894 3.3932 25 7 6.1251 1.6307 2.1310 26 14 7.2405 3.2038 4.1213 27 1 6.9102 3.4402 5.5498 28 1 8.6143 2.6499 4.0167 29 1 7.1660 4.4865 3.3768 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 3.1264 -0.7994 -1.2056 35 1 2.0699 1.0676 -2.4493 36 1 0.5489 0.1473 -2.5389 37 1 0.2471 -1.5338 -4.1686 38 1 1.0679 -2.6943 -6.1784 39 1 3.4197 -2.4542 -6.8664 40 1 4.9538 -1.0565 -5.5424 41 1 -0.1837 0.6424 2.6225 42 1 1.1218 1.4663 3.5086 43 1 1.0272 1.5995 1.7361 44 1 0.4005 -2.1070 3.8905 45 1 1.3695 -1.9357 5.3735 46 1 0.4000 -0.5655 4.7803 47 1 2.4182 0.8323 4.8543 48 1 3.4815 -0.5150 5.3259 49 1 4.1918 0.3096 2.7196 50 1 6.8337 1.9968 1.5791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271102707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:31 Heat of formation + Delta-G solvation = -74.237859 kcal Electronic energy + Delta-G solvation = -29793.481045 eV Core-core repulsion = 25734.295338 eV Total energy + Delta-G solvation = -4059.185707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.90523 -41.33442 -40.00393 -38.05078 -36.66758 -35.86000 -33.98855 -32.83728 -31.68157 -31.39447 -29.12940 -27.90956 -27.41357 -26.13019 -24.66628 -23.94853 -23.65692 -22.16776 -21.24277 -19.93329 -19.12783 -18.56698 -18.14691 -17.45287 -17.31666 -16.78146 -16.71095 -16.49638 -16.34513 -15.75173 -15.33561 -15.29945 -15.11117 -14.94130 -14.52384 -14.27456 -14.09351 -13.96849 -13.73269 -13.63699 -13.60540 -13.36775 -13.25951 -13.06907 -12.96148 -12.84711 -12.69414 -12.51186 -12.43287 -12.27915 -12.11651 -11.99391 -11.82606 -11.73973 -11.65566 -11.58533 -11.00840 -10.59026 -9.88111 -9.57501 -9.52403 -9.02733 -7.95694 -5.26457 0.21195 0.28476 1.42463 1.44685 1.54723 1.72255 2.12335 2.53013 2.66622 3.37078 3.37824 3.53382 3.58753 3.78677 3.86866 3.97577 4.02394 4.09656 4.16568 4.26486 4.29674 4.33645 4.41420 4.46369 4.46901 4.50268 4.59254 4.66994 4.72708 4.79580 4.83832 4.92373 4.93955 4.95434 4.99310 5.06249 5.07482 5.14196 5.16012 5.28718 5.30913 5.31315 5.39496 5.45309 5.47136 5.50814 5.71126 5.99978 6.23217 6.51420 7.27744 7.30248 8.06490 8.29543 9.27320 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003337 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.220261 B = 8387.789027 C =10447.893432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.082 4.082 5 C -0.072 4.072 6 C -0.128 4.128 7 C -0.090 4.090 8 C -0.125 4.125 9 C -0.097 4.097 10 C -0.168 4.168 11 C 0.058 3.942 12 F -0.161 7.161 13 C 0.509 3.491 14 O -0.595 6.595 15 N -0.596 5.596 16 C 0.076 3.924 17 C 0.127 3.873 18 H 0.061 0.939 19 C -0.139 4.139 20 C 0.141 3.859 21 N -0.743 5.743 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.976 3.024 27 H -0.261 1.261 28 H -0.298 1.298 29 H -0.292 1.292 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.040 0.960 48 H 0.028 0.972 49 H 0.370 0.630 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.235 -5.317 -12.825 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.143 4.143 9 C -0.114 4.114 10 C -0.187 4.187 11 C 0.039 3.961 12 F -0.139 7.139 13 C 0.299 3.701 14 O -0.476 6.476 15 N -0.328 5.328 16 C -0.066 4.066 17 C 0.023 3.977 18 H 0.079 0.921 19 C -0.197 4.197 20 C 0.014 3.986 21 N -0.385 5.385 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.805 3.195 27 H -0.185 1.185 28 H -0.225 1.225 29 H -0.219 1.219 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.155 0.845 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.201 0.799 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.799 -5.680 -12.656 24.175 hybrid contribution 2.159 0.767 0.261 2.306 sum -17.640 -4.913 -12.395 22.112 Atomic orbital electron populations 1.22074 0.89431 1.03513 1.05199 1.21271 1.00205 0.99834 0.91025 0.89122 1.21187 0.99236 0.99093 0.92522 1.20593 1.03222 0.97599 0.89503 1.20189 0.92176 1.01447 0.99040 1.21346 1.00515 0.94615 0.94281 1.21657 0.96160 0.99579 0.96887 1.21394 0.93485 0.96768 0.99791 1.21426 1.02234 0.99896 0.95123 1.18237 0.88824 0.95781 0.93244 1.91478 1.71343 1.73759 1.77365 1.21292 0.78903 0.84036 0.85904 1.90639 1.40097 1.29697 1.87169 1.47780 1.50755 1.29389 1.04852 1.22100 0.94665 0.86304 1.03520 1.21248 0.96240 0.94643 0.85530 0.92079 1.21937 0.96219 1.02112 0.99469 1.21224 0.89338 0.94970 0.93084 1.42557 1.32537 1.52299 1.11154 1.19692 1.05724 1.16451 0.95514 0.90232 1.25641 1.01763 1.03370 0.96301 1.69900 1.35565 1.49219 1.07431 0.85038 0.78303 0.78097 0.78092 1.18514 1.22524 1.21904 0.88826 0.92005 0.89639 0.91368 0.95878 0.91909 0.86562 0.82165 0.81914 0.82231 0.84474 0.88803 0.91404 0.90771 0.91766 0.90426 0.90231 0.94266 0.95462 0.79873 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.58 71.99 0.62 -1.99 16 2 C -0.10 -2.99 1.92 -11.54 -0.02 -3.02 16 3 H 0.09 2.82 7.40 -2.39 -0.02 2.80 16 4 C -0.08 -2.54 4.01 30.59 0.12 -2.42 16 5 C -0.07 -1.71 4.82 29.85 0.14 -1.56 16 6 C -0.13 -3.11 5.14 -19.82 -0.10 -3.21 16 7 C -0.09 -1.53 9.67 22.26 0.22 -1.31 16 8 C -0.13 -1.77 10.04 22.27 0.22 -1.55 16 9 C -0.10 -1.58 10.04 22.26 0.22 -1.35 16 10 C -0.17 -3.90 10.03 22.31 0.22 -3.67 16 11 C 0.06 1.70 7.24 22.38 0.16 1.86 16 12 F -0.16 -5.91 16.66 44.97 0.75 -5.17 16 13 C 0.51 19.52 6.78 87.66 0.59 20.12 16 14 O -0.59 -28.71 15.25 -3.03 -0.05 -28.76 16 15 N -0.60 -20.09 2.24 -822.59 -1.85 -21.94 16 16 C 0.08 1.88 7.86 127.77 1.00 2.88 16 17 C 0.13 4.52 2.80 44.99 0.13 4.64 16 18 H 0.06 2.63 6.90 -2.39 -0.02 2.62 16 19 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 20 C 0.14 5.82 5.50 86.38 0.48 6.30 16 21 N -0.74 -40.40 5.43 -343.45 -1.87 -42.26 16 22 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 25 N -0.97 -63.87 13.06 21.65 0.28 -63.59 16 26 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 29 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 30 H 0.09 1.18 6.56 -2.39 -0.02 1.16 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.30 4.53 -2.39 -0.01 1.29 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.02 0.93 7.96 -2.39 -0.02 0.91 16 35 H 0.06 1.66 7.95 -2.39 -0.02 1.64 16 36 H 0.12 1.81 6.43 -2.39 -0.02 1.79 16 37 H 0.16 1.69 8.04 -2.91 -0.02 1.67 16 38 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.09 1.54 6.95 -2.39 -0.02 1.53 16 42 H 0.07 1.80 6.53 -2.38 -0.02 1.78 16 43 H 0.07 1.80 6.01 -2.39 -0.01 1.79 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 47 H 0.04 1.50 6.88 -2.39 -0.02 1.48 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.37 22.44 7.06 -92.71 -0.65 21.79 16 50 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -84.40 400.54 5.56 -78.84 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.29 Total: 37.15 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.98 Total: -4.53 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -3.43 Total: -127.79 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.75 Total: -5.17 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -84.40 5.56 -78.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271102707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.600 kcal (2) G-P(sol) polarization free energy of solvation -84.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds