Wall clock time and date at job start Tue Mar 31 2020 19:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.88788 * 2 1 4 4 C 1.55129 * 111.22778 * 236.08355 * 2 1 3 5 5 N 1.47423 * 104.72464 * 279.18317 * 4 2 1 6 6 C 1.34776 * 125.65193 * 155.81538 * 5 4 2 7 7 O 1.21274 * 120.00108 * 179.68665 * 6 5 4 8 8 C 1.50701 * 119.99571 * 359.69204 * 6 5 4 9 9 O 1.42905 * 109.46919 * 180.02562 * 8 6 5 10 10 C 1.42902 * 113.99937 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47115 * 180.02562 * 10 9 8 12 12 N 1.30502 * 125.64425 * 270.27059 * 11 10 9 13 13 C 1.34127 * 109.25683 * 180.14781 * 12 11 10 14 14 C 1.34672 * 108.01948 * 359.61488 * 13 12 11 15 15 N 1.35041 * 125.65474 * 89.99185 * 11 10 9 16 16 C 1.46499 * 126.39624 * 0.02562 * 15 11 10 17 17 C 1.47020 * 108.70243 * 335.54998 * 5 4 2 18 18 C 1.54330 * 107.27021 * 1.28777 * 17 5 4 19 19 H 1.08999 * 110.71990 * 263.82740 * 18 17 5 20 20 C 1.53002 * 110.71895 * 140.73644 * 18 17 5 21 21 N 1.46495 * 109.47501 * 66.45448 * 20 18 17 22 22 C 1.36940 * 120.00177 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99514 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99895 * 179.97438 * 22 21 20 25 25 N 1.31611 * 119.99966 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 120.00231 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47141 * 89.99783 * 26 24 22 28 28 H 1.48501 * 109.47067 * 210.00130 * 26 24 22 29 29 H 1.48504 * 109.46647 * 330.00058 * 26 24 22 30 30 H 1.08996 * 109.47700 * 296.12199 * 1 2 3 31 31 H 1.09004 * 109.47460 * 56.11982 * 1 2 3 32 32 H 1.09003 * 109.47367 * 176.11663 * 1 2 3 33 33 H 1.08996 * 110.49734 * 160.33593 * 4 2 1 34 34 H 1.09008 * 110.33987 * 37.94522 * 4 2 1 35 35 H 1.09003 * 109.47679 * 60.00059 * 8 6 5 36 36 H 1.09001 * 109.46865 * 299.99720 * 8 6 5 37 37 H 1.08994 * 109.47262 * 59.99700 * 10 9 8 38 38 H 1.09006 * 109.46443 * 299.99463 * 10 9 8 39 39 H 1.08002 * 125.99481 * 179.88589 * 13 12 11 40 40 H 1.07997 * 126.59503 * 180.24939 * 14 13 12 41 41 H 1.09002 * 109.47096 * 269.97154 * 16 15 11 42 42 H 1.08994 * 109.47272 * 29.97187 * 16 15 11 43 43 H 1.09002 * 109.47111 * 149.97482 * 16 15 11 44 44 H 1.09002 * 109.88457 * 120.70293 * 17 5 4 45 45 H 1.09000 * 109.88659 * 241.87644 * 17 5 4 46 46 H 1.08996 * 109.47188 * 186.45797 * 20 18 17 47 47 H 1.09003 * 109.46629 * 306.45034 * 20 18 17 48 48 H 0.97006 * 119.99664 * 359.97438 * 21 20 18 49 49 H 0.97004 * 120.00403 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0916 -0.8069 -1.2000 5 7 2.0152 -2.2158 -0.7728 6 6 1.9492 -3.2829 -1.5934 7 8 1.8951 -4.4021 -1.1294 8 6 1.9428 -3.0853 -3.0874 9 8 1.8673 -4.3566 -3.7356 10 6 1.8557 -4.2816 -5.1626 11 6 1.7740 -5.6720 -5.7381 12 7 2.7916 -6.4330 -6.0356 13 6 2.3441 -7.5978 -6.5274 14 6 0.9979 -7.5604 -6.5272 15 7 0.6357 -6.3389 -6.0265 16 6 -0.7313 -5.8468 -5.8391 17 6 2.0293 -2.2643 0.6965 18 6 2.0860 -0.8075 1.2025 19 1 3.1130 -0.5151 1.4217 20 6 1.1993 -0.6281 2.4364 21 7 1.7521 -1.4007 3.5516 22 6 1.1230 -1.3936 4.7679 23 1 0.2194 -0.8181 4.9051 24 6 1.6465 -2.1260 5.8244 25 7 1.0416 -2.1196 6.9932 26 14 3.2090 -3.1220 5.5869 27 1 4.3875 -2.2792 5.9123 28 1 3.1833 -4.3048 6.4844 29 1 3.2981 -3.5737 4.1750 30 1 -0.3634 0.4524 0.9226 31 1 -0.3634 0.5729 -0.8532 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1260 -0.5260 -1.3981 34 1 1.4775 -0.6452 -2.0860 35 1 2.8577 -2.5762 -3.3906 36 1 1.0803 -2.4819 -3.3703 37 1 2.7691 -3.7979 -5.5085 38 1 0.9918 -3.7024 -5.4889 39 1 2.9560 -8.4230 -6.8608 40 1 0.3320 -8.3436 -6.8580 41 1 -1.0815 -6.1173 -4.8429 42 1 -0.7451 -4.7623 -5.9470 43 1 -1.3846 -6.2948 -6.5879 44 1 1.1227 -2.7480 1.0602 45 1 2.9072 -2.8108 1.0410 46 1 1.1634 0.4269 2.7078 47 1 0.1920 -0.9806 2.2142 48 1 2.5635 -1.9178 3.4282 49 1 1.4076 -2.6312 7.7317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271630343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:57 Heat of formation + Delta-G solvation = 10.355183 kcal Electronic energy + Delta-G solvation = -28821.571046 eV Core-core repulsion = 24785.973530 eV Total energy + Delta-G solvation = -4035.597516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41529 -40.36665 -38.63461 -37.41442 -34.88079 -34.38703 -32.88086 -31.42194 -31.35122 -29.79823 -28.35278 -27.48972 -26.81139 -26.18415 -25.11910 -22.94685 -21.75135 -21.56464 -20.42327 -19.58518 -19.38971 -17.89472 -17.46025 -17.30447 -16.98903 -16.62310 -16.00489 -15.77047 -15.40849 -15.03961 -14.81771 -14.31035 -14.21002 -14.03963 -13.77347 -13.67456 -13.31734 -13.22824 -13.10010 -12.94193 -12.72344 -12.61600 -12.48409 -12.26111 -12.09719 -11.99862 -11.71991 -11.34812 -10.90977 -10.62561 -10.57730 -10.39591 -10.31036 -10.20483 -10.06803 -9.95777 -9.82411 -9.58213 -8.89447 -8.81139 -8.66630 -7.23519 -5.76154 -3.12144 1.51171 2.32650 2.50406 2.53714 2.88595 3.40455 3.44519 3.48813 3.60381 4.09626 4.24205 4.26701 4.34895 4.40135 4.56793 4.61051 4.66385 4.68378 4.74269 4.77605 4.83994 4.91844 4.97157 5.10755 5.14259 5.23095 5.31120 5.39783 5.41371 5.55578 5.61862 5.70632 5.74008 5.87929 5.87961 6.02946 6.10058 6.16962 6.21487 6.30432 6.40872 6.55788 6.57116 6.70071 6.76035 7.42645 7.75442 7.98716 8.11334 8.42499 9.21176 9.93802 10.12565 11.42059 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.002197 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.812897 B =12743.767257 C =13664.822293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.093 0.907 4 C 0.099 3.901 5 N -0.616 5.616 6 C 0.525 3.475 7 O -0.515 6.515 8 C 0.051 3.949 9 O -0.356 6.356 10 C 0.149 3.851 11 C 0.202 3.798 12 N -0.470 5.470 13 C -0.028 4.028 14 C -0.050 4.050 15 N -0.450 5.450 16 C 0.069 3.931 17 C 0.117 3.883 18 C -0.106 4.106 19 H 0.086 0.914 20 C 0.167 3.833 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.361 0.639 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 0.684 -32.752 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.111 0.889 4 C -0.024 4.024 5 N -0.353 5.353 6 C 0.312 3.688 7 O -0.390 6.390 8 C -0.029 4.029 9 O -0.273 6.273 10 C 0.071 3.929 11 C -0.060 4.060 12 N -0.190 5.190 13 C -0.177 4.177 14 C -0.183 4.183 15 N -0.133 5.133 16 C -0.073 4.073 17 C -0.005 4.005 18 C -0.126 4.126 19 H 0.104 0.896 20 C 0.040 3.960 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.713 3.287 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.190 0.810 40 H 0.195 0.805 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.193 0.807 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.823 0.139 -32.130 32.181 hybrid contribution 0.247 -0.860 -0.245 0.928 sum -1.576 -0.721 -32.375 32.421 Atomic orbital electron populations 1.21797 0.93896 1.02258 1.02268 1.22352 0.96761 0.98984 0.93402 0.88879 1.22538 1.00923 0.80810 0.98081 1.48452 1.73358 1.05919 1.07527 1.19740 0.77570 0.83956 0.87537 1.90780 1.48010 1.23117 1.77044 1.22197 1.02642 0.86767 0.91264 1.88116 1.95235 1.26993 1.16961 1.20494 1.02315 0.88807 0.81278 1.22575 0.81176 0.97025 1.05219 1.70215 1.29572 1.03484 1.15753 1.22359 0.92230 0.97231 1.05858 1.22789 0.97896 0.89462 1.08194 1.45276 1.07725 1.13434 1.46855 1.22111 0.79960 1.01323 1.03926 1.22061 1.03099 0.97653 0.77692 1.22556 1.01228 0.93259 0.95519 0.89606 1.20690 0.94769 0.95460 0.85062 1.42738 1.30569 1.57732 1.09219 1.19020 1.07493 1.25040 0.85917 0.89210 1.24669 0.98668 1.00097 0.95620 1.69696 1.40981 1.45752 1.01697 0.86574 0.84415 0.80347 0.77392 1.21071 1.21672 1.20185 0.91082 0.92870 0.92413 0.91006 0.90696 0.89880 0.90173 0.89610 0.91560 0.80974 0.80534 0.89853 0.89508 0.89369 0.90353 0.91507 0.94965 0.94831 0.80666 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.16 37.15 0.30 -1.14 16 2 C -0.10 -0.93 3.54 -88.35 -0.31 -1.25 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.10 0.85 6.17 -2.41 -0.01 0.84 16 5 N -0.62 -7.90 3.31 -170.38 -0.56 -8.46 16 6 C 0.53 7.58 7.93 -10.99 -0.09 7.49 16 7 O -0.52 -10.29 16.83 -14.35 -0.24 -10.53 16 8 C 0.05 0.49 5.42 36.01 0.20 0.69 16 9 O -0.36 -4.42 9.86 -55.14 -0.54 -4.96 16 10 C 0.15 1.31 6.24 36.01 0.22 1.53 16 11 C 0.20 2.27 7.53 -155.42 -1.17 1.10 16 12 N -0.47 -6.23 11.25 -10.81 -0.12 -6.35 16 13 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 14 C -0.05 -0.42 11.58 -16.56 -0.19 -0.61 16 15 N -0.45 -4.03 3.15 -121.28 -0.38 -4.41 16 16 C 0.07 0.34 10.97 59.85 0.66 1.00 16 17 C 0.12 1.82 5.83 -3.06 -0.02 1.80 16 18 C -0.11 -1.47 2.86 -88.78 -0.25 -1.73 16 19 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.17 3.02 4.53 -4.04 -0.02 3.00 16 21 N -0.76 -17.72 5.25 -59.91 -0.31 -18.03 16 22 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.01 0.16 5.50 -17.44 -0.10 0.06 16 25 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 26 Si 0.88 22.60 27.74 -169.99 -4.71 17.89 16 27 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 29 H -0.28 -6.74 6.52 56.52 0.37 -6.38 16 30 H 0.07 0.78 6.77 -51.93 -0.35 0.43 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.44 7.40 -51.92 -0.38 0.06 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.35 7.06 -51.93 -0.37 -0.02 16 39 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.28 7.04 -51.93 -0.37 -0.08 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.08 1.41 7.77 -51.93 -0.40 1.01 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.62 6.69 -51.93 -0.35 0.27 16 48 H 0.36 8.36 5.38 -40.82 -0.22 8.14 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -40.06 398.48 -9.18 -49.24 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.92 Total: 3.20 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.15 Total: 5.20 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -0.61 Total: -66.05 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.79 Total: -15.49 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -40.06 -9.18 -49.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271630343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.594 kcal (2) G-P(sol) polarization free energy of solvation -40.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds