Wall clock time and date at job start Tue Mar 31 2020 19:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.88788 * 2 1 4 4 C 1.55129 * 111.22778 * 236.08355 * 2 1 3 5 5 N 1.47423 * 104.72464 * 279.18317 * 4 2 1 6 6 C 1.34776 * 125.65193 * 155.81538 * 5 4 2 7 7 O 1.21274 * 120.00108 * 179.68665 * 6 5 4 8 8 C 1.50701 * 119.99571 * 359.69204 * 6 5 4 9 9 O 1.42905 * 109.46919 * 180.02562 * 8 6 5 10 10 C 1.42902 * 113.99937 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47115 * 180.02562 * 10 9 8 12 12 N 1.30502 * 125.64425 * 270.27059 * 11 10 9 13 13 C 1.34127 * 109.25683 * 180.14781 * 12 11 10 14 14 C 1.34672 * 108.01948 * 359.61488 * 13 12 11 15 15 N 1.35041 * 125.65474 * 89.99185 * 11 10 9 16 16 C 1.46499 * 126.39624 * 0.02562 * 15 11 10 17 17 C 1.47020 * 108.70243 * 335.54998 * 5 4 2 18 18 C 1.54330 * 107.27021 * 1.28777 * 17 5 4 19 19 H 1.08999 * 110.71990 * 263.82740 * 18 17 5 20 20 C 1.53002 * 110.71895 * 140.73644 * 18 17 5 21 21 N 1.46495 * 109.47501 * 66.45448 * 20 18 17 22 22 C 1.36940 * 120.00177 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99514 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99895 * 179.97438 * 22 21 20 25 25 N 1.31611 * 119.99966 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 120.00231 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47141 * 89.99783 * 26 24 22 28 28 H 1.48501 * 109.47067 * 210.00130 * 26 24 22 29 29 H 1.48504 * 109.46647 * 330.00058 * 26 24 22 30 30 H 1.08996 * 109.47700 * 296.12199 * 1 2 3 31 31 H 1.09004 * 109.47460 * 56.11982 * 1 2 3 32 32 H 1.09003 * 109.47367 * 176.11663 * 1 2 3 33 33 H 1.08996 * 110.49734 * 160.33593 * 4 2 1 34 34 H 1.09008 * 110.33987 * 37.94522 * 4 2 1 35 35 H 1.09003 * 109.47679 * 60.00059 * 8 6 5 36 36 H 1.09001 * 109.46865 * 299.99720 * 8 6 5 37 37 H 1.08994 * 109.47262 * 59.99700 * 10 9 8 38 38 H 1.09006 * 109.46443 * 299.99463 * 10 9 8 39 39 H 1.08002 * 125.99481 * 179.88589 * 13 12 11 40 40 H 1.07997 * 126.59503 * 180.24939 * 14 13 12 41 41 H 1.09002 * 109.47096 * 269.97154 * 16 15 11 42 42 H 1.08994 * 109.47272 * 29.97187 * 16 15 11 43 43 H 1.09002 * 109.47111 * 149.97482 * 16 15 11 44 44 H 1.09002 * 109.88457 * 120.70293 * 17 5 4 45 45 H 1.09000 * 109.88659 * 241.87644 * 17 5 4 46 46 H 1.08996 * 109.47188 * 186.45797 * 20 18 17 47 47 H 1.09003 * 109.46629 * 306.45034 * 20 18 17 48 48 H 0.97006 * 119.99664 * 359.97438 * 21 20 18 49 49 H 0.97004 * 120.00403 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0916 -0.8069 -1.2000 5 7 2.0152 -2.2158 -0.7728 6 6 1.9492 -3.2829 -1.5934 7 8 1.8951 -4.4021 -1.1294 8 6 1.9428 -3.0853 -3.0874 9 8 1.8673 -4.3566 -3.7356 10 6 1.8557 -4.2816 -5.1626 11 6 1.7740 -5.6720 -5.7381 12 7 2.7916 -6.4330 -6.0356 13 6 2.3441 -7.5978 -6.5274 14 6 0.9979 -7.5604 -6.5272 15 7 0.6357 -6.3389 -6.0265 16 6 -0.7313 -5.8468 -5.8391 17 6 2.0293 -2.2643 0.6965 18 6 2.0860 -0.8075 1.2025 19 1 3.1130 -0.5151 1.4217 20 6 1.1993 -0.6281 2.4364 21 7 1.7521 -1.4007 3.5516 22 6 1.1230 -1.3936 4.7679 23 1 0.2194 -0.8181 4.9051 24 6 1.6465 -2.1260 5.8244 25 7 1.0416 -2.1196 6.9932 26 14 3.2090 -3.1220 5.5869 27 1 4.3875 -2.2792 5.9123 28 1 3.1833 -4.3048 6.4844 29 1 3.2981 -3.5737 4.1750 30 1 -0.3634 0.4524 0.9226 31 1 -0.3634 0.5729 -0.8532 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1260 -0.5260 -1.3981 34 1 1.4775 -0.6452 -2.0860 35 1 2.8577 -2.5762 -3.3906 36 1 1.0803 -2.4819 -3.3703 37 1 2.7691 -3.7979 -5.5085 38 1 0.9918 -3.7024 -5.4889 39 1 2.9560 -8.4230 -6.8608 40 1 0.3320 -8.3436 -6.8580 41 1 -1.0815 -6.1173 -4.8429 42 1 -0.7451 -4.7623 -5.9470 43 1 -1.3846 -6.2948 -6.5879 44 1 1.1227 -2.7480 1.0602 45 1 2.9072 -2.8108 1.0410 46 1 1.1634 0.4269 2.7078 47 1 0.1920 -0.9806 2.2142 48 1 2.5635 -1.9178 3.4282 49 1 1.4076 -2.6312 7.7317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271630343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:56 Heat of formation + Delta-G solvation = -18.804232 kcal Electronic energy + Delta-G solvation = -28822.835493 eV Core-core repulsion = 24785.973530 eV Total energy + Delta-G solvation = -4036.861963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.06755 -41.39042 -39.58007 -38.38565 -36.61208 -34.98629 -34.30290 -33.10727 -32.09003 -31.01610 -29.36624 -28.05321 -27.59164 -27.10489 -26.33042 -24.50378 -22.97057 -22.40702 -21.09810 -20.75558 -20.44110 -19.45922 -18.55781 -17.99477 -17.86984 -17.44903 -16.90242 -16.68488 -16.59683 -16.17703 -15.91537 -15.66965 -15.19504 -15.03132 -14.89589 -14.68727 -14.38320 -14.12692 -14.03936 -13.98191 -13.81745 -13.52973 -13.40783 -13.27403 -13.07342 -13.03395 -12.84687 -12.82382 -12.61518 -12.21841 -11.87485 -11.66608 -11.55166 -11.47342 -11.05233 -11.00901 -10.92752 -10.84695 -10.61856 -9.73055 -9.48856 -9.30998 -8.05949 -5.38294 0.84489 1.33682 1.37037 1.43002 1.50539 1.60597 1.87767 2.08043 2.44208 2.92938 3.24308 3.30321 3.44727 3.58114 3.69186 3.75980 3.84138 3.91387 3.98900 4.11572 4.17572 4.24172 4.26278 4.28978 4.35603 4.39641 4.49499 4.53721 4.60603 4.66605 4.68952 4.76338 4.76982 4.85589 4.97537 5.02206 5.09051 5.21817 5.25319 5.26133 5.31900 5.53761 5.73779 5.76565 5.90991 6.16714 6.18463 6.47327 7.05265 7.05998 7.08187 7.82564 7.98964 9.15536 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.002197 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.812897 B =12743.767257 C =13664.822293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.126 0.874 4 C 0.098 3.902 5 N -0.611 5.611 6 C 0.514 3.486 7 O -0.589 6.589 8 C 0.059 3.941 9 O -0.399 6.399 10 C 0.149 3.851 11 C 0.176 3.824 12 N -0.519 5.519 13 C -0.062 4.062 14 C -0.041 4.041 15 N -0.451 5.451 16 C 0.062 3.938 17 C 0.118 3.882 18 C -0.098 4.098 19 H 0.096 0.904 20 C 0.165 3.835 21 N -0.762 5.762 22 C -0.230 4.230 23 H 0.061 0.939 24 C -0.063 4.063 25 N -0.982 5.982 26 Si 0.949 3.051 27 H -0.271 1.271 28 H -0.298 1.298 29 H -0.262 1.262 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.185 0.815 40 H 0.213 0.787 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.026 0.974 48 H 0.363 0.637 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 2.776 -36.623 36.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.144 0.856 4 C -0.023 4.023 5 N -0.346 5.346 6 C 0.304 3.696 7 O -0.468 6.468 8 C -0.019 4.019 9 O -0.317 6.317 10 C 0.072 3.928 11 C -0.086 4.086 12 N -0.240 5.240 13 C -0.210 4.210 14 C -0.175 4.175 15 N -0.134 5.134 16 C -0.079 4.079 17 C -0.005 4.005 18 C -0.117 4.117 19 H 0.114 0.886 20 C 0.039 3.961 21 N -0.407 5.407 22 C -0.361 4.361 23 H 0.079 0.921 24 C -0.254 4.254 25 N -0.632 5.632 26 Si 0.777 3.223 27 H -0.197 1.197 28 H -0.224 1.224 29 H -0.188 1.188 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.202 0.798 40 H 0.229 0.771 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.196 0.804 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.598 2.315 -36.074 36.184 hybrid contribution 0.039 -1.475 0.929 1.744 sum -1.559 0.840 -35.145 35.190 Atomic orbital electron populations 1.21796 0.94197 1.01225 1.02977 1.22430 0.96434 1.00156 0.91418 0.85592 1.22920 1.03418 0.77299 0.98666 1.48527 1.72153 1.07893 1.06010 1.20834 0.75896 0.83042 0.89852 1.90742 1.51455 1.26045 1.78607 1.22329 1.06150 0.86479 0.86984 1.88058 1.95689 1.28943 1.19000 1.20747 1.04600 0.88042 0.79418 1.23104 0.81634 0.98157 1.05683 1.70136 1.31569 1.04961 1.17340 1.22782 0.93745 0.97374 1.07123 1.23361 0.97757 0.89918 1.06498 1.45574 1.08684 1.13290 1.45853 1.22408 0.78288 1.02861 1.04339 1.21800 1.00119 0.98324 0.80263 1.22447 1.01084 0.93009 0.95192 0.88573 1.20876 0.95210 0.94751 0.85285 1.42825 1.30484 1.58398 1.09040 1.19046 1.06221 1.23146 0.87691 0.92102 1.25447 1.02397 1.02111 0.95487 1.69863 1.43113 1.47524 1.02748 0.85497 0.80647 0.78483 0.77690 1.19722 1.22444 1.18769 0.92780 0.89420 0.94711 0.88316 0.86547 0.86557 0.85743 0.88652 0.87583 0.79795 0.77077 0.90701 0.87525 0.86718 0.94036 0.93993 0.94148 0.95611 0.80449 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.16 71.98 0.59 -1.85 16 2 C -0.09 -1.31 3.54 -9.33 -0.03 -1.34 16 3 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.10 1.16 6.17 86.93 0.54 1.70 16 5 N -0.61 -14.45 3.31 -811.35 -2.69 -17.14 16 6 C 0.51 14.24 7.93 87.66 0.69 14.94 16 7 O -0.59 -24.40 16.83 16.03 0.27 -24.13 16 8 C 0.06 0.93 5.42 71.24 0.39 1.31 16 9 O -0.40 -9.20 9.86 -129.94 -1.28 -10.48 16 10 C 0.15 2.24 6.24 71.24 0.44 2.69 16 11 C 0.18 3.80 7.53 138.13 1.04 4.84 16 12 N -0.52 -13.90 11.25 -188.13 -2.12 -16.01 16 13 C -0.06 -1.30 11.87 83.52 0.99 -0.31 16 14 C -0.04 -0.64 11.58 83.09 0.96 0.33 16 15 N -0.45 -7.35 3.15 -537.61 -1.69 -9.04 16 16 C 0.06 0.45 10.97 127.77 1.40 1.85 16 17 C 0.12 3.70 5.83 86.73 0.51 4.21 16 18 C -0.10 -2.54 2.86 -9.60 -0.03 -2.57 16 19 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 20 C 0.16 5.88 4.53 86.38 0.39 6.27 16 21 N -0.76 -35.95 5.25 -343.46 -1.80 -37.76 16 22 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 23 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 24 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 25 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 26 Si 0.95 47.66 27.74 68.60 1.90 49.56 16 27 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 28 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 29 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 30 H 0.05 1.09 6.77 -2.39 -0.02 1.08 16 31 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.03 0.74 7.91 -2.39 -0.02 0.72 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 0.53 7.40 -2.38 -0.02 0.51 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.13 0.82 7.85 -2.39 -0.02 0.80 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 0.65 7.06 -2.38 -0.02 0.63 16 39 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.11 0.32 7.04 -2.39 -0.02 0.30 16 43 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.04 1.58 7.77 -2.39 -0.02 1.56 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.03 0.98 6.69 -2.39 -0.02 0.96 16 48 H 0.36 16.75 5.38 -92.70 -0.50 16.25 16 49 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -96.34 398.48 2.51 -93.83 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.39 Total: 18.84 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 9.23 Total: 16.25 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -8.00 Total: -143.87 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.01 Total: -34.61 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.90 Total: 49.56 kcal Total: -96.34 2.51 -93.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271630343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.022 kcal (2) G-P(sol) polarization free energy of solvation -96.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds