Wall clock time and date at job start Tue Mar 31 2020 19:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.29047 * 2 1 4 4 C 1.54005 * 110.32281 * 122.13485 * 2 1 3 5 5 N 1.47490 * 107.08237 * 120.19885 * 4 2 1 6 6 C 1.34777 * 127.03149 * 154.51761 * 5 4 2 7 7 O 1.21278 * 119.99854 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 0.02562 * 6 5 4 9 9 O 1.42898 * 109.47171 * 180.02562 * 8 6 5 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 N 1.30497 * 125.65065 * 90.02498 * 11 10 9 13 13 C 1.34126 * 109.25459 * 180.02562 * 12 11 10 14 14 C 1.34667 * 108.02250 * 359.97438 * 13 12 11 15 15 N 1.35043 * 125.64754 * 269.71868 * 11 10 9 16 16 C 1.46501 * 126.40030 * 359.97438 * 15 11 10 17 17 C 1.48114 * 105.93301 * 334.77436 * 5 4 2 18 18 C 1.54599 * 103.41982 * 39.02681 * 17 5 4 19 19 H 1.08999 * 110.57898 * 81.17503 * 18 17 5 20 20 C 1.53003 * 110.83180 * 204.44696 * 18 17 5 21 21 N 1.46503 * 109.46977 * 288.56124 * 20 18 17 22 22 C 1.36939 * 119.99908 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99931 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99976 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99921 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00173 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47106 * 90.00071 * 26 24 22 28 28 H 1.48497 * 109.47330 * 210.00148 * 26 24 22 29 29 H 1.48507 * 109.46925 * 330.00214 * 26 24 22 30 30 H 1.09001 * 109.46952 * 299.31970 * 1 2 3 31 31 H 1.09000 * 109.47094 * 59.31973 * 1 2 3 32 32 H 1.09005 * 109.47367 * 179.32340 * 1 2 3 33 33 H 1.09001 * 109.91884 * 0.83542 * 4 2 1 34 34 H 1.08998 * 109.91042 * 239.55499 * 4 2 1 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 38 38 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 39 39 H 1.08009 * 125.98610 * 180.02562 * 13 12 11 40 40 H 1.08005 * 126.59024 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.47117 * 90.00360 * 16 15 11 42 42 H 1.08997 * 109.47103 * 209.99683 * 16 15 11 43 43 H 1.08995 * 109.47062 * 330.00585 * 16 15 11 44 44 H 1.08999 * 110.66097 * 157.51073 * 17 5 4 45 45 H 1.08994 * 110.66019 * 280.62855 * 17 5 4 46 46 H 1.09003 * 109.47460 * 48.55928 * 20 18 17 47 47 H 1.08999 * 109.47142 * 168.56396 * 20 18 17 48 48 H 0.97003 * 119.99866 * 0.02562 * 21 20 18 49 49 H 0.97003 * 119.99850 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8803 -1.8851 0.7103 6 6 3.8922 -2.5095 1.3449 7 8 4.4803 -3.4194 0.7998 8 6 4.2928 -2.0771 2.7319 9 8 5.3810 -2.8840 3.1867 10 6 5.8398 -2.5547 4.4994 11 6 6.9819 -3.4633 4.8749 12 7 8.2459 -3.2287 4.6507 13 6 8.9755 -4.2522 5.1186 14 6 8.1317 -5.1552 5.6536 15 7 6.8673 -4.6525 5.5045 16 6 5.6220 -5.2876 5.9428 17 6 2.3640 -2.1760 -0.6471 18 6 2.0671 -0.7736 -1.2262 19 1 2.9805 -0.3135 -1.6031 20 6 1.0051 -0.8522 -2.3249 21 7 1.5799 -1.4837 -3.5153 22 6 0.8108 -1.6633 -4.6340 23 1 -0.2193 -1.3390 -4.6389 24 6 1.3556 -2.2611 -5.7622 25 7 2.6112 -2.6559 -5.7564 26 14 0.3068 -2.5054 -7.2885 27 1 0.4260 -1.3140 -8.1668 28 1 0.7727 -3.7096 -8.0218 29 1 -1.1123 -2.6867 -6.8901 30 1 -0.3633 0.5032 0.8960 31 1 -0.3633 0.5244 -0.8838 32 1 -0.3634 -1.0276 -0.0121 33 1 1.2329 -1.1554 1.8112 34 1 2.6807 -0.1092 1.8349 35 1 3.4458 -2.1943 3.4079 36 1 4.5998 -1.0314 2.7120 37 1 6.1785 -1.5187 4.5166 38 1 5.0249 -2.6825 5.2118 39 1 10.0514 -4.3370 5.0748 40 1 8.4012 -6.0934 6.1158 41 1 5.2348 -5.9187 5.1428 42 1 5.8162 -5.8976 6.8250 43 1 4.8885 -4.5192 6.1867 44 1 3.1194 -2.6861 -1.2448 45 1 1.4507 -2.7684 -0.5924 46 1 0.1603 -1.4437 -1.9720 47 1 0.6658 0.1530 -2.5748 48 1 2.5051 -1.7753 -3.5108 49 1 2.9918 -3.0740 -6.5446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271630344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:01 Heat of formation + Delta-G solvation = -19.702269 kcal Electronic energy + Delta-G solvation = -28593.256415 eV Core-core repulsion = 24556.355510 eV Total energy + Delta-G solvation = -4036.900905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.05884 -41.31367 -39.57482 -38.37802 -36.44029 -34.97689 -34.35522 -32.84200 -32.08679 -30.83826 -29.26509 -28.03097 -27.31724 -26.93435 -26.32216 -24.75293 -23.31604 -22.39726 -21.10576 -20.48788 -20.30800 -19.05797 -18.53163 -18.00577 -17.76526 -17.41379 -16.93354 -16.68612 -16.39572 -16.17960 -15.95576 -15.41126 -15.29389 -15.17735 -15.07926 -14.56602 -14.37094 -14.12820 -13.84179 -13.79559 -13.54917 -13.48751 -13.38673 -13.13110 -13.04760 -12.91400 -12.79385 -12.76026 -12.64131 -12.16288 -11.85164 -11.62506 -11.51301 -11.33363 -11.03938 -10.93561 -10.89285 -10.84350 -10.60824 -9.77976 -9.47793 -8.99709 -7.94980 -5.24551 0.85221 1.45749 1.48416 1.50803 1.56823 1.60490 1.88572 2.08562 2.55609 2.93320 3.33245 3.39062 3.58025 3.61666 3.74962 3.85146 3.86541 3.92497 4.11522 4.16006 4.18456 4.24609 4.26992 4.36350 4.38938 4.40722 4.54400 4.55116 4.60579 4.67632 4.71721 4.77177 4.81408 4.85340 4.93974 5.02562 5.15800 5.25975 5.26963 5.28134 5.41755 5.50330 5.58691 5.77528 5.91742 6.17876 6.26570 6.51756 7.07245 7.08614 7.31889 8.09425 8.30262 9.28899 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.002006 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.555984 B =13952.423327 C =15065.908323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.104 0.896 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.518 3.482 7 O -0.588 6.588 8 C 0.060 3.940 9 O -0.398 6.398 10 C 0.149 3.851 11 C 0.175 3.825 12 N -0.520 5.520 13 C -0.063 4.063 14 C -0.040 4.040 15 N -0.451 5.451 16 C 0.062 3.938 17 C 0.120 3.880 18 C -0.098 4.098 19 H 0.063 0.937 20 C 0.166 3.834 21 N -0.751 5.751 22 C -0.241 4.241 23 H 0.082 0.918 24 C -0.083 4.083 25 N -0.974 5.974 26 Si 0.976 3.024 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.265 1.265 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.185 0.815 40 H 0.214 0.786 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.369 0.631 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 2.838 33.706 33.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.123 0.877 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.307 3.693 7 O -0.468 6.468 8 C -0.018 4.018 9 O -0.317 6.317 10 C 0.072 3.928 11 C -0.086 4.086 12 N -0.241 5.241 13 C -0.211 4.211 14 C -0.175 4.175 15 N -0.133 5.133 16 C -0.079 4.079 17 C -0.003 4.003 18 C -0.118 4.118 19 H 0.081 0.919 20 C 0.040 3.960 21 N -0.393 5.393 22 C -0.372 4.372 23 H 0.099 0.901 24 C -0.275 4.275 25 N -0.625 5.625 26 Si 0.805 3.195 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.202 0.798 40 H 0.230 0.770 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.200 0.800 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.203 2.813 32.976 33.096 hybrid contribution 0.142 -1.306 -1.282 1.835 sum 0.345 1.507 31.694 31.731 Atomic orbital electron populations 1.21900 0.92912 1.02149 1.03117 1.22066 0.97446 0.99813 0.91469 0.87739 1.22642 0.95561 0.87180 0.96668 1.48864 1.33178 1.35993 1.17228 1.20821 0.78255 0.81590 0.88592 1.90750 1.54570 1.32356 1.69133 1.22311 0.91833 0.96505 0.91189 1.88059 1.51332 1.59348 1.32941 1.20746 0.91713 0.96246 0.84110 1.23085 0.94183 0.89318 1.02051 1.70137 1.02626 1.29341 1.21995 1.22783 1.01119 0.92411 1.04773 1.23363 0.83036 1.02862 1.08202 1.45571 1.08893 1.16016 1.42866 1.22416 0.83147 1.00077 1.02261 1.22215 0.97901 0.97573 0.82592 1.22304 0.98811 0.94798 0.95872 0.91881 1.20892 0.94282 0.95704 0.85129 1.42721 1.12417 1.72465 1.11716 1.19674 0.94960 1.31068 0.91533 0.90051 1.25663 0.97577 1.02450 1.01796 1.69856 1.14508 1.48179 1.29995 0.85095 0.78362 0.76670 0.79380 1.21302 1.22621 1.18958 0.89483 0.92586 0.93115 0.88328 0.87111 0.85518 0.86784 0.88781 0.87458 0.79833 0.76976 0.90657 0.86662 0.87519 0.94334 0.90963 0.94911 0.94962 0.80007 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.78 71.98 0.56 -1.80 16 2 C -0.09 -1.64 3.53 -9.90 -0.03 -1.68 16 3 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.10 1.47 6.42 86.53 0.56 2.03 16 5 N -0.62 -16.23 3.29 -810.08 -2.67 -18.90 16 6 C 0.52 15.55 7.97 87.66 0.70 16.25 16 7 O -0.59 -25.85 16.71 16.01 0.27 -25.58 16 8 C 0.06 1.05 5.50 71.24 0.39 1.45 16 9 O -0.40 -9.83 9.86 -129.94 -1.28 -11.12 16 10 C 0.15 2.43 6.24 71.24 0.44 2.88 16 11 C 0.18 3.98 7.53 138.13 1.04 5.02 16 12 N -0.52 -14.58 11.25 -188.13 -2.12 -16.70 16 13 C -0.06 -1.38 11.87 83.52 0.99 -0.39 16 14 C -0.04 -0.65 11.58 83.09 0.96 0.31 16 15 N -0.45 -7.65 3.15 -537.61 -1.69 -9.34 16 16 C 0.06 0.46 10.97 127.77 1.40 1.87 16 17 C 0.12 4.11 6.44 86.61 0.56 4.66 16 18 C -0.10 -3.03 2.99 -9.70 -0.03 -3.06 16 19 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 20 C 0.17 6.32 4.44 86.38 0.38 6.70 16 21 N -0.75 -39.00 5.52 -343.44 -1.90 -40.90 16 22 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 23 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 24 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 25 N -0.97 -62.64 13.06 21.65 0.28 -62.36 16 26 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.08 6.76 -2.39 -0.02 1.06 16 32 H 0.05 0.94 7.51 -2.38 -0.02 0.93 16 33 H 0.10 0.99 7.68 -2.39 -0.02 0.97 16 34 H 0.11 0.84 7.54 -2.39 -0.02 0.82 16 35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.29 7.91 -2.39 -0.02 1.27 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 0.76 7.06 -2.39 -0.02 0.74 16 39 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.11 0.35 7.04 -2.39 -0.02 0.33 16 44 H 0.04 1.68 7.85 -2.39 -0.02 1.67 16 45 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 46 H 0.03 1.22 6.80 -2.39 -0.02 1.20 16 47 H 0.03 1.20 7.37 -2.39 -0.02 1.18 16 48 H 0.37 21.11 7.67 -92.71 -0.71 20.40 16 49 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -94.53 400.84 2.39 -92.14 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.24 Total: 26.45 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 9.23 Total: 16.97 kcal Atomic # 7 Polarization: -140.10 SS G_CDS: -8.09 Total: -148.19 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.01 Total: -36.70 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -94.53 2.39 -92.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271630344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.437 kcal (2) G-P(sol) polarization free energy of solvation -94.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds