Wall clock time and date at job start Tue Mar 31 2020 21:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08996 * 109.50590 * 330.09330 * 3 2 1 5 5 C 1.53135 * 109.50551 * 209.99859 * 3 2 1 6 6 C 1.53244 * 109.52010 * 170.25737 * 5 3 2 7 7 N 1.46591 * 108.78265 * 50.58918 * 6 5 3 8 8 C 1.34869 * 127.50308 * 162.81961 * 7 6 5 9 9 C 1.36562 * 106.78512 * 180.10853 * 8 7 6 10 10 C 1.47329 * 126.21215 * 179.97438 * 9 8 7 11 11 O 1.21626 * 119.99643 * 359.97438 * 10 9 8 12 12 N 1.34767 * 120.00433 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00241 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47123 * 35.00120 * 13 12 10 15 15 C 1.52999 * 109.47173 * 275.00104 * 13 12 10 16 16 C 1.53003 * 109.47264 * 154.99721 * 13 12 10 17 17 C 1.52994 * 109.47183 * 295.00403 * 16 13 12 18 18 N 1.46505 * 109.46857 * 180.02562 * 17 16 13 19 19 C 1.36943 * 119.99630 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99983 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99614 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46920 * 60.00724 * 23 21 19 25 25 H 1.48504 * 109.46849 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47484 * 300.00235 * 23 21 19 27 27 N 1.35888 * 107.58155 * 359.96093 * 9 8 7 28 28 C 1.29791 * 108.85251 * 359.97438 * 27 9 8 29 29 C 1.51096 * 127.17956 * 180.14984 * 28 27 9 30 30 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 33 33 H 1.08997 * 109.46870 * 290.27656 * 5 3 2 34 34 H 1.09004 * 109.45987 * 50.26091 * 5 3 2 35 35 H 1.09004 * 109.58790 * 170.37698 * 6 5 3 36 36 H 1.09003 * 109.59042 * 290.80108 * 6 5 3 37 37 H 1.07997 * 126.60392 * 0.12936 * 8 7 6 38 38 H 0.97001 * 119.99946 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47109 * 300.00025 * 15 13 12 40 40 H 1.08999 * 109.47383 * 59.99617 * 15 13 12 41 41 H 1.09005 * 109.46950 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.46901 * 55.00174 * 16 13 12 43 43 H 1.09000 * 109.47049 * 174.99527 * 16 13 12 44 44 H 1.09000 * 109.47016 * 299.99702 * 17 16 13 45 45 H 1.08994 * 109.47209 * 59.99867 * 17 16 13 46 46 H 0.96993 * 119.99869 * 359.97438 * 18 17 16 47 47 H 0.96998 * 119.99698 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.71957 * 44.32593 * 29 28 27 49 49 H 1.08996 * 109.71863 * 283.67414 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0002 -0.5123 5 6 3.3602 1.2642 -0.7217 6 6 3.8696 2.6934 -0.9371 7 7 3.8106 3.4128 0.3388 8 6 4.4444 4.5574 0.6662 9 6 4.0938 4.8480 1.9536 10 6 4.5463 6.0104 2.7376 11 8 5.3055 6.8205 2.2411 12 7 4.1198 6.1755 4.0054 13 6 4.5702 7.3310 4.7851 14 1 4.6783 8.1934 4.1274 15 6 5.9182 7.0134 5.4354 16 6 3.5408 7.6451 5.8726 17 6 2.2279 8.0835 5.2208 18 7 1.2424 8.3848 6.2621 19 6 -0.0154 8.8004 5.9148 20 1 -0.2806 8.9064 4.8733 21 6 -0.9492 9.0853 6.9014 22 7 -0.6257 8.9566 8.1707 23 14 -2.6647 9.6529 6.4277 24 1 -3.3219 8.6073 5.6031 25 1 -3.4644 9.8901 7.6564 26 1 -2.5715 10.9128 5.6474 27 7 3.2515 3.8708 2.3802 28 6 3.0807 3.0153 1.4192 29 6 2.2236 1.7712 1.4458 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0783 0.7099 -0.1175 34 1 3.2410 0.7721 -1.6870 35 1 4.8995 2.6645 -1.2929 36 1 3.2415 3.1986 -1.6707 37 1 5.1022 5.1332 0.0321 38 1 3.5146 5.5292 4.4015 39 1 5.8101 6.1510 6.0932 40 1 6.6516 6.7896 4.6607 41 1 6.2531 7.8730 6.0159 42 1 3.3669 6.7544 6.4764 43 1 3.9166 8.4470 6.5080 44 1 2.4018 8.9742 4.6170 45 1 1.8521 7.2816 4.5855 46 1 1.4809 8.2899 7.1975 47 1 -1.2782 9.1561 8.8602 48 1 1.2614 1.9972 1.9053 49 1 2.7281 0.9891 2.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272854571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:10 Heat of formation + Delta-G solvation = -20.637610 kcal Electronic energy + Delta-G solvation = -28771.897354 eV Core-core repulsion = 24734.955890 eV Total energy + Delta-G solvation = -4036.941464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68531 -39.48512 -38.87424 -36.37627 -35.79836 -34.23201 -33.25693 -31.84722 -30.81482 -29.91897 -28.77443 -27.76228 -27.08941 -24.89359 -23.99869 -23.23525 -22.52661 -21.45079 -20.50892 -20.03459 -19.61464 -17.89399 -17.29191 -17.03456 -16.50993 -16.23303 -16.03646 -15.71627 -15.38338 -14.84270 -14.53850 -14.27511 -14.14396 -13.99564 -13.86838 -13.65815 -13.47309 -13.33660 -13.18201 -13.02600 -12.72744 -12.43303 -12.16579 -12.04336 -11.87023 -11.72508 -11.42643 -11.10915 -10.93684 -10.70187 -10.55010 -10.50039 -10.42866 -10.23472 -10.00017 -9.98509 -9.83973 -9.62041 -8.88905 -8.78186 -8.56381 -6.84192 -5.69759 -2.97782 1.47259 2.23803 2.25104 2.97206 3.43299 3.48612 3.52175 3.53835 3.63185 3.81805 3.96683 4.00375 4.35514 4.48514 4.55376 4.58647 4.64105 4.73343 4.86615 4.92087 4.94697 5.08322 5.12837 5.17019 5.24882 5.28674 5.38528 5.40478 5.48598 5.51115 5.63161 5.81415 5.84378 5.90164 6.06181 6.14881 6.27634 6.36407 6.41177 6.45669 6.55082 6.70463 6.75221 6.94774 6.99991 7.55616 7.76451 7.89039 8.46431 8.49720 9.60347 10.19262 10.54382 11.53377 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.002669 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.265962 B =10488.659390 C =12861.005382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.087 3.913 4 H 0.071 0.929 5 C -0.133 4.133 6 C 0.105 3.895 7 N -0.458 5.458 8 C 0.036 3.964 9 C -0.058 4.058 10 C 0.605 3.395 11 O -0.552 6.552 12 N -0.703 5.703 13 C 0.145 3.855 14 H 0.088 0.912 15 C -0.160 4.160 16 C -0.134 4.134 17 C 0.154 3.846 18 N -0.734 5.734 19 C -0.236 4.236 20 H 0.068 0.932 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.449 5.449 28 C 0.212 3.788 29 C -0.055 4.055 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.189 0.811 38 H 0.409 0.591 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.100 0.900 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.897 -19.863 -20.373 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C 0.028 3.972 4 H 0.089 0.911 5 C -0.170 4.170 6 C -0.016 4.016 7 N -0.141 5.141 8 C -0.103 4.103 9 C -0.187 4.187 10 C 0.390 3.610 11 O -0.431 6.431 12 N -0.353 5.353 13 C 0.040 3.960 14 H 0.106 0.894 15 C -0.218 4.218 16 C -0.173 4.173 17 C 0.026 3.974 18 N -0.378 5.378 19 C -0.368 4.368 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 N -0.168 5.168 28 C -0.052 4.052 29 C -0.094 4.094 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.206 0.794 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.118 0.882 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.054 -19.467 -20.124 30.102 hybrid contribution -1.088 0.298 -0.498 1.233 sum 9.966 -19.169 -20.621 29.867 Atomic orbital electron populations 1.22890 0.80233 1.03245 1.00569 1.87922 1.20343 1.26395 1.94985 1.22131 0.94825 0.85643 0.94628 0.91073 1.21947 0.96692 0.95115 1.03291 1.22062 1.04057 0.92087 0.83437 1.45372 1.35787 1.19653 1.13299 1.22417 1.00850 0.89415 0.97575 1.20684 1.04938 0.98983 0.94074 1.16840 0.79855 0.83053 0.81206 1.90769 1.36835 1.44394 1.71075 1.45910 1.49038 1.27457 1.12928 1.20995 0.93488 0.88626 0.92867 0.89351 1.22160 0.96975 1.02004 1.00710 1.22054 0.95653 1.02232 0.97312 1.20639 0.87860 0.96876 0.92018 1.42360 1.10001 1.81117 1.04298 1.19200 0.88576 1.36598 0.92381 0.91354 1.24729 0.98430 1.02739 0.95238 1.69652 1.34656 1.55673 0.98465 0.86262 0.84493 0.78560 0.76865 1.21331 1.21693 1.21314 1.70397 1.15932 1.02606 1.27891 1.23245 0.99412 0.99178 0.83376 1.20706 0.99310 0.91187 0.98174 0.93754 0.89194 0.93346 0.89534 0.88163 0.88061 0.89055 0.79354 0.75482 0.92530 0.92431 0.91560 0.91330 0.90269 0.96487 0.96168 0.78335 0.93536 0.88185 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.38 -2.60 10.35 -35.23 -0.36 -2.96 16 3 C 0.09 0.52 2.63 -26.46 -0.07 0.46 16 4 H 0.07 0.40 7.76 -51.93 -0.40 0.00 16 5 C -0.13 -0.57 5.59 -26.54 -0.15 -0.72 16 6 C 0.11 0.47 6.96 -3.87 -0.03 0.45 16 7 N -0.46 -4.11 3.11 -113.41 -0.35 -4.47 16 8 C 0.04 0.40 11.32 -16.82 -0.19 0.21 16 9 C -0.06 -0.83 6.98 -82.98 -0.58 -1.41 16 10 C 0.60 9.82 7.78 -12.57 -0.10 9.72 16 11 O -0.55 -10.05 16.54 5.25 0.09 -9.96 16 12 N -0.70 -10.93 4.53 -54.91 -0.25 -11.18 16 13 C 0.14 2.22 2.57 -67.93 -0.17 2.04 16 14 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 16 C -0.13 -2.28 4.87 -26.73 -0.13 -2.41 16 17 C 0.15 3.32 6.15 -4.04 -0.02 3.29 16 18 N -0.73 -19.54 5.60 -59.91 -0.34 -19.87 16 19 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.94 -29.07 13.06 55.49 0.72 -28.35 16 23 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 N -0.45 -6.37 11.00 -7.01 -0.08 -6.44 16 28 C 0.21 2.32 7.64 -154.64 -1.18 1.14 16 29 C -0.05 -0.44 5.96 -27.49 -0.16 -0.60 16 30 H 0.04 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.42 8.11 -51.93 -0.42 0.00 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.41 6.31 8.31 -40.82 -0.34 5.97 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.45 7.75 -51.93 -0.40 0.05 16 46 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 47 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -36.48 404.62 -9.24 -45.71 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.16 Total: 9.35 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.59 Total: 4.00 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -0.29 Total: -70.31 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.28 Total: -12.92 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.48 -9.24 -45.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272854571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.077 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds