Wall clock time and date at job start Tue Mar 31 2020 21:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08996 * 109.50590 * 330.09330 * 3 2 1 5 5 C 1.53135 * 109.50551 * 209.99859 * 3 2 1 6 6 C 1.53244 * 109.52010 * 170.25737 * 5 3 2 7 7 N 1.46591 * 108.78265 * 50.58918 * 6 5 3 8 8 C 1.34869 * 127.50308 * 162.81961 * 7 6 5 9 9 C 1.36562 * 106.78512 * 180.10853 * 8 7 6 10 10 C 1.47329 * 126.21215 * 179.97438 * 9 8 7 11 11 O 1.21626 * 119.99643 * 359.97438 * 10 9 8 12 12 N 1.34767 * 120.00433 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00241 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47123 * 35.00120 * 13 12 10 15 15 C 1.52999 * 109.47173 * 275.00104 * 13 12 10 16 16 C 1.53003 * 109.47264 * 154.99721 * 13 12 10 17 17 C 1.52994 * 109.47183 * 295.00403 * 16 13 12 18 18 N 1.46505 * 109.46857 * 180.02562 * 17 16 13 19 19 C 1.36943 * 119.99630 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99983 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99614 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46920 * 60.00724 * 23 21 19 25 25 H 1.48504 * 109.46849 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47484 * 300.00235 * 23 21 19 27 27 N 1.35888 * 107.58155 * 359.96093 * 9 8 7 28 28 C 1.29791 * 108.85251 * 359.97438 * 27 9 8 29 29 C 1.51096 * 127.17956 * 180.14984 * 28 27 9 30 30 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 33 33 H 1.08997 * 109.46870 * 290.27656 * 5 3 2 34 34 H 1.09004 * 109.45987 * 50.26091 * 5 3 2 35 35 H 1.09004 * 109.58790 * 170.37698 * 6 5 3 36 36 H 1.09003 * 109.59042 * 290.80108 * 6 5 3 37 37 H 1.07997 * 126.60392 * 0.12936 * 8 7 6 38 38 H 0.97001 * 119.99946 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47109 * 300.00025 * 15 13 12 40 40 H 1.08999 * 109.47383 * 59.99617 * 15 13 12 41 41 H 1.09005 * 109.46950 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.46901 * 55.00174 * 16 13 12 43 43 H 1.09000 * 109.47049 * 174.99527 * 16 13 12 44 44 H 1.09000 * 109.47016 * 299.99702 * 17 16 13 45 45 H 1.08994 * 109.47209 * 59.99867 * 17 16 13 46 46 H 0.96993 * 119.99869 * 359.97438 * 18 17 16 47 47 H 0.96998 * 119.99698 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.71957 * 44.32593 * 29 28 27 49 49 H 1.08996 * 109.71863 * 283.67414 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0002 -0.5123 5 6 3.3602 1.2642 -0.7217 6 6 3.8696 2.6934 -0.9371 7 7 3.8106 3.4128 0.3388 8 6 4.4444 4.5574 0.6662 9 6 4.0938 4.8480 1.9536 10 6 4.5463 6.0104 2.7376 11 8 5.3055 6.8205 2.2411 12 7 4.1198 6.1755 4.0054 13 6 4.5702 7.3310 4.7851 14 1 4.6783 8.1934 4.1274 15 6 5.9182 7.0134 5.4354 16 6 3.5408 7.6451 5.8726 17 6 2.2279 8.0835 5.2208 18 7 1.2424 8.3848 6.2621 19 6 -0.0154 8.8004 5.9148 20 1 -0.2806 8.9064 4.8733 21 6 -0.9492 9.0853 6.9014 22 7 -0.6257 8.9566 8.1707 23 14 -2.6647 9.6529 6.4277 24 1 -3.3219 8.6073 5.6031 25 1 -3.4644 9.8901 7.6564 26 1 -2.5715 10.9128 5.6474 27 7 3.2515 3.8708 2.3802 28 6 3.0807 3.0153 1.4192 29 6 2.2236 1.7712 1.4458 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0783 0.7099 -0.1175 34 1 3.2410 0.7721 -1.6870 35 1 4.8995 2.6645 -1.2929 36 1 3.2415 3.1986 -1.6707 37 1 5.1022 5.1332 0.0321 38 1 3.5146 5.5292 4.4015 39 1 5.8101 6.1510 6.0932 40 1 6.6516 6.7896 4.6607 41 1 6.2531 7.8730 6.0159 42 1 3.3669 6.7544 6.4764 43 1 3.9166 8.4470 6.5080 44 1 2.4018 8.9742 4.6170 45 1 1.8521 7.2816 4.5855 46 1 1.4809 8.2899 7.1975 47 1 -1.2782 9.1561 8.8602 48 1 1.2614 1.9972 1.9053 49 1 2.7281 0.9891 2.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272854571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:09 Heat of formation + Delta-G solvation = -46.253124 kcal Electronic energy + Delta-G solvation = -28773.008126 eV Core-core repulsion = 24734.955890 eV Total energy + Delta-G solvation = -4038.052236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.49736 -40.64211 -39.45345 -37.83004 -36.41647 -36.09156 -33.97636 -33.56980 -32.27177 -30.78868 -29.51556 -29.38465 -27.58838 -25.98627 -25.40478 -24.28422 -23.17110 -23.10251 -21.81793 -21.17269 -20.27889 -19.26783 -18.65899 -17.84284 -17.35186 -17.27996 -16.81703 -16.70510 -16.32715 -16.03976 -15.78378 -15.48975 -15.33513 -15.17306 -14.90116 -14.82107 -14.69161 -14.41071 -14.26075 -14.19615 -13.60482 -13.41083 -13.11036 -12.89298 -12.88423 -12.87135 -12.49501 -12.38859 -12.30971 -12.24830 -12.02641 -11.94670 -11.89005 -11.65174 -11.39976 -11.08924 -10.95370 -10.76289 -10.67313 -10.10370 -9.50184 -9.03021 -7.97164 -5.26785 0.54212 1.29616 1.44940 1.48859 1.55200 1.57704 2.29994 2.49188 2.53742 2.54294 3.13399 3.35645 3.43745 3.54976 3.62359 3.83717 3.89406 4.03958 4.05896 4.09055 4.16031 4.22209 4.35327 4.39656 4.44097 4.48308 4.54796 4.55115 4.64584 4.67383 4.75204 4.78626 4.85828 4.87412 4.91662 4.95961 4.98880 5.08013 5.21382 5.25264 5.32115 5.39975 5.45407 5.57824 5.97605 6.12899 6.25110 6.49700 6.83102 7.24595 7.31224 8.05573 8.31417 9.26120 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.002669 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.265962 B =10488.659390 C =12861.005382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.089 3.911 4 H 0.077 0.923 5 C -0.127 4.127 6 C 0.099 3.901 7 N -0.448 5.448 8 C 0.054 3.946 9 C -0.101 4.101 10 C 0.601 3.399 11 O -0.580 6.580 12 N -0.704 5.704 13 C 0.151 3.849 14 H 0.074 0.926 15 C -0.151 4.151 16 C -0.118 4.118 17 C 0.156 3.844 18 N -0.745 5.745 19 C -0.252 4.252 20 H 0.069 0.931 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.976 3.024 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.278 1.278 27 N -0.488 5.488 28 C 0.210 3.790 29 C -0.053 4.053 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.212 0.788 38 H 0.409 0.591 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.010 0.990 45 H 0.014 0.986 46 H 0.376 0.624 47 H 0.253 0.747 48 H 0.093 0.907 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.969 -20.957 -22.509 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.030 3.970 4 H 0.095 0.905 5 C -0.164 4.164 6 C -0.021 4.021 7 N -0.130 5.130 8 C -0.087 4.087 9 C -0.229 4.229 10 C 0.389 3.611 11 O -0.461 6.461 12 N -0.354 5.354 13 C 0.046 3.954 14 H 0.092 0.908 15 C -0.209 4.209 16 C -0.156 4.156 17 C 0.030 3.970 18 N -0.388 5.388 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.204 1.204 27 N -0.207 5.207 28 C -0.055 4.055 29 C -0.093 4.093 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.228 0.772 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.028 0.972 45 H 0.032 0.968 46 H 0.208 0.792 47 H 0.062 0.938 48 H 0.111 0.889 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.134 -20.594 -22.301 32.333 hybrid contribution -1.116 0.564 0.095 1.254 sum 10.018 -20.030 -22.206 31.539 Atomic orbital electron populations 1.23025 0.79499 1.04081 1.00889 1.87910 1.21264 1.26737 1.94942 1.22152 0.96039 0.85531 0.93238 0.90487 1.21949 0.95266 0.95085 1.04129 1.22506 1.06285 0.91746 0.81539 1.45641 1.34174 1.18876 1.14278 1.22724 0.99856 0.89590 0.96533 1.20596 1.07294 0.99445 0.95547 1.17156 0.79363 0.83400 0.81201 1.90732 1.38189 1.45592 1.71575 1.45934 1.49023 1.27324 1.13083 1.20909 0.94100 0.88314 0.92089 0.90776 1.22074 0.95145 1.03067 1.00624 1.21896 0.93639 1.02517 0.97572 1.20712 0.89010 0.96179 0.91139 1.42537 1.10261 1.81084 1.04871 1.19565 0.89879 1.36391 0.92552 0.91308 1.25590 1.02478 1.03265 0.95208 1.69806 1.35859 1.56764 0.99373 0.85188 0.79493 0.78335 0.76605 1.20358 1.21614 1.20428 1.70299 1.17006 1.03596 1.29846 1.23659 0.99275 0.99166 0.83403 1.20798 0.98410 0.90052 1.00009 0.92700 0.88199 0.93771 0.90043 0.85797 0.85445 0.87012 0.77172 0.75551 0.91634 0.92927 0.89966 0.90836 0.89502 0.97250 0.96808 0.79192 0.93795 0.88882 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.39 -4.70 10.35 -148.98 -1.54 -6.24 16 3 C 0.09 0.92 2.63 30.77 0.08 1.00 16 4 H 0.08 0.71 7.76 -2.39 -0.02 0.69 16 5 C -0.13 -0.73 5.59 30.72 0.17 -0.56 16 6 C 0.10 0.56 6.96 86.44 0.60 1.16 16 7 N -0.45 -7.25 3.11 -512.73 -1.60 -8.85 16 8 C 0.05 1.15 11.32 83.83 0.95 2.09 16 9 C -0.10 -2.93 6.98 40.52 0.28 -2.65 16 10 C 0.60 20.00 7.78 86.64 0.67 20.67 16 11 O -0.58 -21.48 16.54 -4.11 -0.07 -21.55 16 12 N -0.70 -22.43 4.53 -445.89 -2.02 -24.45 16 13 C 0.15 4.63 2.57 44.99 0.12 4.75 16 14 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 15 C -0.15 -3.84 9.48 71.98 0.68 -3.15 16 16 C -0.12 -4.01 4.87 30.59 0.15 -3.86 16 17 C 0.16 6.86 6.15 86.38 0.53 7.39 16 18 N -0.74 -40.28 5.60 -343.46 -1.92 -42.21 16 19 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 22 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 23 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 N -0.49 -14.09 11.00 -176.09 -1.94 -16.03 16 28 C 0.21 4.49 7.64 138.05 1.05 5.55 16 29 C -0.05 -0.83 5.96 30.10 0.18 -0.65 16 30 H 0.05 0.36 8.09 -2.39 -0.02 0.34 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 34 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.21 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.41 13.05 8.31 -92.71 -0.77 12.28 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.09 2.83 8.14 -2.39 -0.02 2.82 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.01 0.63 7.75 -2.39 -0.02 0.61 16 46 H 0.38 21.12 7.67 -92.71 -0.71 20.41 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -79.47 404.62 0.71 -78.77 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.52 Total: 36.23 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 8.01 Total: 15.18 kcal Atomic # 7 Polarization: -144.74 SS G_CDS: -7.19 Total: -151.93 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.61 Total: -27.79 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -79.47 0.71 -78.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272854571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.513 kcal (2) G-P(sol) polarization free energy of solvation -79.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds