Wall clock time and date at job start Tue Mar 31 2020 19:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47461 * 2 1 4 4 C 1.53006 * 109.47527 * 120.00003 * 2 1 3 5 5 C 1.50701 * 109.46689 * 295.00140 * 4 2 1 6 6 C 1.38240 * 119.97723 * 89.99871 * 5 4 2 7 7 C 1.38198 * 120.02941 * 179.97438 * 6 5 4 8 8 C 1.38457 * 119.97412 * 0.23101 * 7 6 5 9 9 F 1.35105 * 120.02969 * 179.73000 * 8 7 6 10 10 C 1.38468 * 119.94668 * 359.49381 * 8 7 6 11 11 C 1.38202 * 119.97180 * 0.52743 * 10 8 7 12 12 C 1.50700 * 109.47505 * 239.99972 * 2 1 3 13 13 O 1.21285 * 120.00070 * 254.20496 * 12 2 1 14 14 N 1.34775 * 119.99816 * 74.19798 * 12 2 1 15 15 C 1.46504 * 120.00050 * 3.69901 * 14 12 2 16 16 C 1.46509 * 119.99698 * 183.70127 * 14 12 2 17 17 C 1.52996 * 109.47018 * 90.00424 * 16 14 12 18 18 C 1.53001 * 109.46718 * 180.02562 * 17 16 14 19 19 N 1.46505 * 109.46745 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99978 * 89.99908 * 19 18 17 21 21 C 1.36934 * 120.00260 * 269.99337 * 19 18 17 22 22 H 1.08002 * 119.99707 * 20.29928 * 21 19 18 23 23 C 1.38804 * 120.00571 * 200.29400 * 21 19 18 24 24 N 1.31620 * 119.99834 * 13.43635 * 23 21 19 25 25 Si 1.86800 * 120.00596 * 193.43322 * 23 21 19 26 26 H 1.48506 * 109.46853 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47208 * 119.99726 * 25 23 21 28 28 H 1.48500 * 109.47609 * 240.00534 * 25 23 21 29 29 H 1.08999 * 109.47043 * 187.24558 * 1 2 3 30 30 H 1.09001 * 109.47143 * 307.23816 * 1 2 3 31 31 H 1.08996 * 109.47235 * 67.23960 * 1 2 3 32 32 H 1.08991 * 109.47352 * 175.00380 * 4 2 1 33 33 H 1.08998 * 109.46669 * 54.99332 * 4 2 1 34 34 H 1.08002 * 119.98615 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.01501 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.01395 * 180.25550 * 10 8 7 37 37 H 1.08000 * 119.98486 * 179.70219 * 11 10 8 38 38 H 1.08997 * 109.46637 * 85.84371 * 15 14 12 39 39 H 1.09000 * 109.46536 * 205.83733 * 15 14 12 40 40 H 1.08997 * 109.46959 * 325.84117 * 15 14 12 41 41 H 1.09005 * 109.46462 * 209.99727 * 16 14 12 42 42 H 1.08990 * 109.47039 * 329.99887 * 16 14 12 43 43 H 1.09011 * 109.47022 * 299.99445 * 17 16 14 44 44 H 1.08995 * 109.47761 * 59.99372 * 17 16 14 45 45 H 1.08994 * 109.47091 * 299.99305 * 18 17 16 46 46 H 1.08991 * 109.47545 * 59.99968 * 18 17 16 47 47 H 1.09003 * 109.46728 * 94.67386 * 20 19 18 48 48 H 1.09000 * 109.46707 * 214.67259 * 20 19 18 49 49 H 1.08997 * 109.47075 * 334.67537 * 20 19 18 50 50 H 0.96996 * 120.00278 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6414 0.0571 2.4766 6 6 0.4354 -0.2054 3.0994 7 6 0.0690 0.5074 4.2252 8 6 0.9080 1.4880 4.7266 9 9 0.5484 2.1893 5.8240 10 6 2.1183 1.7461 4.1054 11 6 2.4824 1.0324 2.9793 12 6 2.0324 -0.7104 -1.2304 13 8 2.5041 -1.8239 -1.1377 14 7 1.9574 -0.1084 -2.4339 15 6 1.4628 1.2669 -2.5355 16 6 2.3704 -0.8294 -3.6406 17 6 1.1695 -1.5759 -4.2248 18 6 1.6011 -2.3294 -5.4846 19 7 0.4513 -3.0447 -6.0436 20 6 -0.4118 -2.3879 -7.0286 21 6 0.1833 -4.3273 -5.6457 22 1 0.5864 -4.6994 -4.7154 23 6 -0.6065 -5.1491 -6.4378 24 7 -0.8786 -4.8035 -7.6783 25 14 -1.2833 -6.7458 -5.7434 26 1 -0.8360 -6.9023 -4.3360 27 1 -2.7672 -6.7163 -5.7903 28 1 -0.7849 -7.8877 -6.5515 29 1 -0.3633 -1.0195 0.1296 30 1 -0.3633 0.6219 0.8182 31 1 -0.3633 0.3976 -0.9476 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7197 1.2952 34 1 -0.2206 -0.9677 2.7059 35 1 -0.8735 0.3025 4.7114 36 1 2.7754 2.5080 4.4980 37 1 3.4241 1.2368 2.4918 38 1 2.2859 1.9620 -2.3702 39 1 1.0435 1.4297 -3.5284 40 1 0.6911 1.4319 -1.7836 41 1 2.7498 -0.1197 -4.3758 42 1 3.1538 -1.5434 -3.3869 43 1 0.7901 -2.2857 -3.4895 44 1 0.3860 -0.8619 -4.4784 45 1 1.9807 -1.6201 -6.2200 46 1 2.3843 -3.0435 -5.2305 47 1 -0.0826 -2.6521 -8.0336 48 1 -1.4414 -2.7159 -6.8855 49 1 -0.3534 -1.3072 -6.8995 50 1 -1.4302 -5.3779 -8.2320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273591295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:27 Heat of formation + Delta-G solvation = -42.321407 kcal Electronic energy + Delta-G solvation = -28633.153664 eV Core-core repulsion = 24575.351958 eV Total energy + Delta-G solvation = -4057.801706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.21857 -40.41120 -39.34895 -36.37641 -35.31778 -35.09479 -32.35264 -31.54801 -30.96159 -29.92365 -27.13607 -26.77625 -25.98647 -25.54555 -23.63473 -23.23301 -22.13277 -21.05141 -20.17956 -18.89067 -18.01162 -17.38097 -16.70019 -16.62127 -16.13597 -15.89616 -15.69146 -15.47815 -14.84747 -14.66423 -14.45007 -14.10374 -13.91915 -13.85341 -13.64227 -13.27415 -13.24203 -12.89189 -12.70439 -12.62487 -12.58243 -12.37868 -12.16749 -11.76128 -11.65015 -11.47959 -11.32252 -11.24115 -11.13513 -10.92333 -10.78023 -10.68834 -10.39610 -10.10276 -9.81319 -9.71055 -9.64602 -9.47262 -8.88533 -8.64647 -8.43667 -6.69907 -5.66382 -3.09903 0.75043 0.84557 2.65756 2.99194 3.23351 3.41878 3.49060 3.52465 3.90409 4.22302 4.32473 4.50893 4.55566 4.56097 4.69556 4.77726 4.89618 4.95167 5.00039 5.07927 5.20754 5.36264 5.41797 5.43766 5.46174 5.49238 5.52486 5.57606 5.61487 5.68166 5.74571 5.82374 5.84949 5.92388 5.97229 6.05736 6.11034 6.20042 6.21622 6.48728 6.51833 6.66258 6.78026 6.86976 7.06383 7.41636 7.45008 7.76602 7.88300 8.22562 8.45551 9.30836 9.94769 10.42273 11.39125 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002085 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.164779 B =13422.913220 C =14335.468527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.064 4.064 5 C -0.085 4.085 6 C -0.085 4.085 7 C -0.152 4.152 8 C 0.090 3.910 9 F -0.143 7.143 10 C -0.152 4.152 11 C -0.088 4.088 12 C 0.515 3.485 13 O -0.534 6.534 14 N -0.614 5.614 15 C 0.071 3.929 16 C 0.115 3.885 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.605 5.605 20 C 0.166 3.834 21 C -0.247 4.247 22 H 0.069 0.931 23 C -0.004 4.004 24 N -0.912 5.912 25 Si 0.903 3.097 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.028 0.972 48 H 0.043 0.957 49 H -0.006 1.006 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 18.237 20.997 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 H 0.111 0.889 4 C -0.101 4.101 5 C -0.085 4.085 6 C -0.103 4.103 7 C -0.170 4.170 8 C 0.070 3.930 9 F -0.121 7.121 10 C -0.171 4.171 11 C -0.106 4.106 12 C 0.303 3.697 13 O -0.410 6.410 14 N -0.347 5.347 15 C -0.072 4.072 16 C -0.008 4.008 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.327 5.327 20 C 0.021 3.979 21 C -0.377 4.377 22 H 0.087 0.913 23 C -0.201 4.201 24 N -0.558 5.558 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.013 0.987 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.205 17.576 20.928 27.821 hybrid contribution -0.639 -0.564 0.449 0.963 sum 4.566 17.013 21.377 27.699 Atomic orbital electron populations 1.21924 0.92578 1.03348 1.02821 1.21260 0.97986 1.00514 0.92637 0.88919 1.20448 1.02145 0.98512 0.89022 1.19987 0.94509 0.96895 0.97156 1.21023 0.96084 0.98982 0.94166 1.21174 1.00628 0.96920 0.98319 1.17750 0.95260 0.94020 0.85921 1.91499 1.91930 1.77445 1.51273 1.21143 0.96002 1.02341 0.97598 1.20959 0.99755 0.94822 0.95090 1.20545 0.78476 0.86328 0.84393 1.90723 1.44829 1.19520 1.85956 1.47920 1.64938 1.14672 1.07170 1.21936 0.99290 0.82305 1.03669 1.21604 0.98503 0.95903 0.84748 1.22600 0.96788 0.99333 1.00381 1.20620 0.90367 0.94272 0.92017 1.43926 1.27783 1.12375 1.48653 1.20769 0.94940 0.89724 0.92480 1.19270 1.28167 0.88274 1.01981 0.91307 1.24965 1.01930 0.98022 0.95172 1.70098 1.41552 1.38150 1.05985 0.86195 0.78606 0.83466 0.78429 1.20296 1.21707 1.21770 0.91556 0.91280 0.91501 0.90092 0.89512 0.84753 0.84749 0.84829 0.84968 0.92797 0.90623 0.90789 0.91044 0.89996 0.91867 0.92960 0.94751 0.93468 0.95418 0.93825 0.98723 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.14 37.15 0.30 -0.96 16 2 C -0.10 -0.94 1.88 -91.77 -0.17 -1.11 16 3 H 0.09 0.67 7.45 -51.93 -0.39 0.29 16 4 C -0.06 -0.58 4.15 -27.88 -0.12 -0.69 16 5 C -0.09 -0.67 4.72 -104.62 -0.49 -1.16 16 6 C -0.08 -0.64 8.15 -39.60 -0.32 -0.96 16 7 C -0.15 -1.16 10.03 -39.52 -0.40 -1.56 16 8 C 0.09 0.76 7.30 -39.42 -0.29 0.47 16 9 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 10 C -0.15 -1.12 10.03 -39.51 -0.40 -1.51 16 11 C -0.09 -0.62 9.70 -39.59 -0.38 -1.01 16 12 C 0.52 6.83 6.89 -10.99 -0.08 6.76 16 13 O -0.53 -9.36 15.64 5.55 0.09 -9.27 16 14 N -0.61 -7.53 2.87 -181.57 -0.52 -8.05 16 15 C 0.07 0.59 9.78 59.85 0.59 1.18 16 16 C 0.11 1.63 5.42 -4.04 -0.02 1.61 16 17 C -0.15 -2.67 5.86 -26.73 -0.16 -2.82 16 18 C 0.16 3.24 5.65 -4.04 -0.02 3.21 16 19 N -0.60 -15.68 2.93 -181.12 -0.53 -16.21 16 20 C 0.17 4.17 8.97 59.85 0.54 4.71 16 21 C -0.25 -7.05 9.68 -15.06 -0.15 -7.20 16 22 H 0.07 1.96 7.86 -52.49 -0.41 1.55 16 23 C 0.00 -0.10 5.10 -17.43 -0.09 -0.19 16 24 N -0.91 -27.28 10.58 55.49 0.59 -26.70 16 25 Si 0.90 22.58 29.57 -169.99 -5.03 17.56 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.07 0.48 6.76 -51.93 -0.35 0.13 16 31 H 0.07 0.57 6.03 -51.93 -0.31 0.26 16 32 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.13 0.87 8.04 -52.49 -0.42 0.45 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.61 8.04 -51.93 -0.42 0.20 16 40 H 0.07 0.51 4.70 -51.93 -0.24 0.27 16 41 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16 43 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 47 H 0.03 0.75 7.43 -51.93 -0.39 0.36 16 48 H 0.04 1.18 7.13 -51.93 -0.37 0.81 16 49 H -0.01 -0.13 8.04 -51.93 -0.42 -0.54 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 405.81 15.07 6.12 6.12 Total: -1.00 -33.86 405.81 -9.20 -43.05 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -8.29 Total: -3.95 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.66 Total: -1.25 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.47 Total: -50.95 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.86 -9.20 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273591295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.733 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds