Wall clock time and date at job start Tue Mar 31 2020 19:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47461 * 2 1 4 4 C 1.53006 * 109.47527 * 120.00003 * 2 1 3 5 5 C 1.50701 * 109.46689 * 295.00140 * 4 2 1 6 6 C 1.38240 * 119.97723 * 89.99871 * 5 4 2 7 7 C 1.38198 * 120.02941 * 179.97438 * 6 5 4 8 8 C 1.38457 * 119.97412 * 0.23101 * 7 6 5 9 9 F 1.35105 * 120.02969 * 179.73000 * 8 7 6 10 10 C 1.38468 * 119.94668 * 359.49381 * 8 7 6 11 11 C 1.38202 * 119.97180 * 0.52743 * 10 8 7 12 12 C 1.50700 * 109.47505 * 239.99972 * 2 1 3 13 13 O 1.21285 * 120.00070 * 254.20496 * 12 2 1 14 14 N 1.34775 * 119.99816 * 74.19798 * 12 2 1 15 15 C 1.46504 * 120.00050 * 3.69901 * 14 12 2 16 16 C 1.46509 * 119.99698 * 183.70127 * 14 12 2 17 17 C 1.52996 * 109.47018 * 90.00424 * 16 14 12 18 18 C 1.53001 * 109.46718 * 180.02562 * 17 16 14 19 19 N 1.46505 * 109.46745 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99978 * 89.99908 * 19 18 17 21 21 C 1.36934 * 120.00260 * 269.99337 * 19 18 17 22 22 H 1.08002 * 119.99707 * 20.29928 * 21 19 18 23 23 C 1.38804 * 120.00571 * 200.29400 * 21 19 18 24 24 N 1.31620 * 119.99834 * 13.43635 * 23 21 19 25 25 Si 1.86800 * 120.00596 * 193.43322 * 23 21 19 26 26 H 1.48506 * 109.46853 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47208 * 119.99726 * 25 23 21 28 28 H 1.48500 * 109.47609 * 240.00534 * 25 23 21 29 29 H 1.08999 * 109.47043 * 187.24558 * 1 2 3 30 30 H 1.09001 * 109.47143 * 307.23816 * 1 2 3 31 31 H 1.08996 * 109.47235 * 67.23960 * 1 2 3 32 32 H 1.08991 * 109.47352 * 175.00380 * 4 2 1 33 33 H 1.08998 * 109.46669 * 54.99332 * 4 2 1 34 34 H 1.08002 * 119.98615 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.01501 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.01395 * 180.25550 * 10 8 7 37 37 H 1.08000 * 119.98486 * 179.70219 * 11 10 8 38 38 H 1.08997 * 109.46637 * 85.84371 * 15 14 12 39 39 H 1.09000 * 109.46536 * 205.83733 * 15 14 12 40 40 H 1.08997 * 109.46959 * 325.84117 * 15 14 12 41 41 H 1.09005 * 109.46462 * 209.99727 * 16 14 12 42 42 H 1.08990 * 109.47039 * 329.99887 * 16 14 12 43 43 H 1.09011 * 109.47022 * 299.99445 * 17 16 14 44 44 H 1.08995 * 109.47761 * 59.99372 * 17 16 14 45 45 H 1.08994 * 109.47091 * 299.99305 * 18 17 16 46 46 H 1.08991 * 109.47545 * 59.99968 * 18 17 16 47 47 H 1.09003 * 109.46728 * 94.67386 * 20 19 18 48 48 H 1.09000 * 109.46707 * 214.67259 * 20 19 18 49 49 H 1.08997 * 109.47075 * 334.67537 * 20 19 18 50 50 H 0.96996 * 120.00278 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6414 0.0571 2.4766 6 6 0.4354 -0.2054 3.0994 7 6 0.0690 0.5074 4.2252 8 6 0.9080 1.4880 4.7266 9 9 0.5484 2.1893 5.8240 10 6 2.1183 1.7461 4.1054 11 6 2.4824 1.0324 2.9793 12 6 2.0324 -0.7104 -1.2304 13 8 2.5041 -1.8239 -1.1377 14 7 1.9574 -0.1084 -2.4339 15 6 1.4628 1.2669 -2.5355 16 6 2.3704 -0.8294 -3.6406 17 6 1.1695 -1.5759 -4.2248 18 6 1.6011 -2.3294 -5.4846 19 7 0.4513 -3.0447 -6.0436 20 6 -0.4118 -2.3879 -7.0286 21 6 0.1833 -4.3273 -5.6457 22 1 0.5864 -4.6994 -4.7154 23 6 -0.6065 -5.1491 -6.4378 24 7 -0.8786 -4.8035 -7.6783 25 14 -1.2833 -6.7458 -5.7434 26 1 -0.8360 -6.9023 -4.3360 27 1 -2.7672 -6.7163 -5.7903 28 1 -0.7849 -7.8877 -6.5515 29 1 -0.3633 -1.0195 0.1296 30 1 -0.3633 0.6219 0.8182 31 1 -0.3633 0.3976 -0.9476 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7197 1.2952 34 1 -0.2206 -0.9677 2.7059 35 1 -0.8735 0.3025 4.7114 36 1 2.7754 2.5080 4.4980 37 1 3.4241 1.2368 2.4918 38 1 2.2859 1.9620 -2.3702 39 1 1.0435 1.4297 -3.5284 40 1 0.6911 1.4319 -1.7836 41 1 2.7498 -0.1197 -4.3758 42 1 3.1538 -1.5434 -3.3869 43 1 0.7901 -2.2857 -3.4895 44 1 0.3860 -0.8619 -4.4784 45 1 1.9807 -1.6201 -6.2200 46 1 2.3843 -3.0435 -5.2305 47 1 -0.0826 -2.6521 -8.0336 48 1 -1.4414 -2.7159 -6.8855 49 1 -0.3534 -1.3072 -6.8995 50 1 -1.4302 -5.3779 -8.2320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273591295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:26 Heat of formation + Delta-G solvation = -60.149636 kcal Electronic energy + Delta-G solvation = -28633.926754 eV Core-core repulsion = 24575.351958 eV Total energy + Delta-G solvation = -4058.574796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.87222 -41.31963 -40.04204 -37.98036 -36.69838 -35.93786 -34.04532 -32.22114 -32.08017 -31.19322 -28.10934 -27.88876 -27.53014 -26.97739 -24.72355 -23.93524 -23.30871 -22.07713 -21.72976 -19.83047 -18.78234 -18.61205 -18.20966 -17.31900 -17.27437 -16.75289 -16.56903 -16.48403 -16.31287 -15.76814 -15.50012 -15.39107 -14.95817 -14.63276 -14.56814 -14.45643 -14.40565 -14.30601 -13.96902 -13.52750 -13.40803 -13.26193 -13.10250 -13.05616 -12.84089 -12.68953 -12.56379 -12.48617 -12.39889 -12.23850 -12.10514 -12.07263 -12.02563 -11.87078 -11.78983 -11.42259 -10.72787 -10.62672 -10.02942 -9.63911 -9.49655 -8.78914 -7.85075 -5.30979 0.14911 0.30066 1.42096 1.43150 1.54473 1.64913 2.08750 2.49000 2.62767 3.27245 3.31899 3.45314 3.70012 3.75396 3.86238 3.96096 4.01317 4.04975 4.16268 4.30220 4.35190 4.38370 4.38896 4.42610 4.55937 4.62491 4.71698 4.75475 4.76757 4.82228 4.86116 4.87003 4.94459 4.98414 5.03032 5.05713 5.18944 5.19561 5.27742 5.28410 5.30532 5.31534 5.51273 5.59530 5.62078 5.63805 5.71525 5.95016 6.31022 6.46252 7.14373 7.22705 7.87953 8.28450 9.18222 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002085 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.164779 B =13422.913220 C =14335.468527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.122 0.878 4 C -0.058 4.058 5 C -0.087 4.087 6 C -0.089 4.089 7 C -0.155 4.155 8 C 0.072 3.928 9 F -0.152 7.152 10 C -0.152 4.152 11 C -0.086 4.086 12 C 0.506 3.494 13 O -0.587 6.587 14 N -0.614 5.614 15 C 0.064 3.936 16 C 0.123 3.877 17 C -0.128 4.128 18 C 0.152 3.848 19 N -0.624 5.624 20 C 0.180 3.820 21 C -0.257 4.257 22 H 0.060 0.940 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.287 1.287 28 H -0.289 1.289 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.034 0.966 47 H 0.003 0.997 48 H 0.015 0.985 49 H 0.034 0.966 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 20.544 21.981 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.140 0.860 4 C -0.096 4.096 5 C -0.087 4.087 6 C -0.107 4.107 7 C -0.174 4.174 8 C 0.053 3.947 9 F -0.131 7.131 10 C -0.170 4.170 11 C -0.104 4.104 12 C 0.296 3.704 13 O -0.467 6.467 14 N -0.346 5.346 15 C -0.078 4.078 16 C -0.001 4.001 17 C -0.169 4.169 18 C 0.025 3.975 19 N -0.347 5.347 20 C 0.035 3.965 21 C -0.388 4.388 22 H 0.078 0.922 23 C -0.251 4.251 24 N -0.586 5.586 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.214 1.214 28 H -0.215 1.215 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.021 0.979 48 H 0.034 0.966 49 H 0.052 0.948 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.476 19.943 21.930 30.143 hybrid contribution -0.672 -1.231 0.149 1.410 sum 4.805 18.711 22.079 29.337 Atomic orbital electron populations 1.21913 0.91902 1.02762 1.03743 1.21260 0.98278 1.01311 0.90433 0.85996 1.20331 1.01677 0.97828 0.89749 1.19901 0.94889 0.97163 0.96795 1.21123 0.96242 0.99123 0.94194 1.21318 1.01083 0.96669 0.98301 1.18013 0.96081 0.94530 0.86074 1.91475 1.92088 1.77710 1.51794 1.21351 0.95759 1.02541 0.97394 1.21150 1.00201 0.94172 0.94886 1.21332 0.77535 0.85839 0.85724 1.90699 1.47248 1.21976 1.86825 1.48025 1.64381 1.16048 1.06147 1.22240 1.00725 0.80117 1.04695 1.21378 0.96081 0.96310 0.86284 1.22270 0.98357 0.98451 0.97833 1.20808 0.88641 0.94385 0.93632 1.44200 1.29380 1.12155 1.48985 1.20526 0.93131 0.91756 0.91108 1.19459 1.28050 0.89641 1.01627 0.92202 1.25708 1.02556 1.01264 0.95568 1.70242 1.42222 1.39269 1.06907 0.85221 0.77801 0.79716 0.77858 1.19785 1.21361 1.21542 0.93279 0.89317 0.91219 0.90572 0.91469 0.84149 0.83684 0.83204 0.83102 0.90230 0.90011 0.89253 0.87737 0.92041 0.95786 0.92221 0.92095 0.94774 0.97853 0.96620 0.94751 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.14 71.98 0.59 -1.63 16 2 C -0.09 -1.52 1.88 -11.54 -0.02 -1.54 16 3 H 0.12 1.33 7.45 -2.39 -0.02 1.31 16 4 C -0.06 -1.00 4.15 29.85 0.12 -0.88 16 5 C -0.09 -1.22 4.72 -19.86 -0.09 -1.31 16 6 C -0.09 -1.22 8.15 22.26 0.18 -1.04 16 7 C -0.16 -2.17 10.03 22.31 0.22 -1.94 16 8 C 0.07 1.12 7.30 22.38 0.16 1.28 16 9 F -0.15 -2.71 17.27 44.97 0.78 -1.94 16 10 C -0.15 -1.91 10.03 22.32 0.22 -1.68 16 11 C -0.09 -1.01 9.70 22.26 0.22 -0.80 16 12 C 0.51 13.05 6.89 87.66 0.60 13.65 16 13 O -0.59 -21.16 15.64 -3.04 -0.05 -21.21 16 14 N -0.61 -13.87 2.87 -846.74 -2.43 -16.30 16 15 C 0.06 0.82 9.78 127.77 1.25 2.07 16 16 C 0.12 3.31 5.42 86.38 0.47 3.78 16 17 C -0.13 -4.48 5.86 30.59 0.18 -4.30 16 18 C 0.15 6.25 5.65 86.38 0.49 6.74 16 19 N -0.62 -32.51 2.93 -726.93 -2.13 -34.64 16 20 C 0.18 9.03 8.97 127.77 1.15 10.18 16 21 C -0.26 -14.94 9.68 84.03 0.81 -14.13 16 22 H 0.06 3.51 7.86 -2.91 -0.02 3.48 16 23 C -0.06 -3.30 5.10 84.86 0.43 -2.87 16 24 N -0.94 -57.11 10.58 21.65 0.23 -56.88 16 25 Si 0.97 47.16 29.57 68.60 2.03 49.19 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 29 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 30 H 0.09 1.01 6.76 -2.39 -0.02 1.00 16 31 H 0.07 1.02 6.03 -2.39 -0.01 1.01 16 32 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 33 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 34 H 0.14 1.69 8.04 -2.91 -0.02 1.67 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 40 H 0.09 0.89 4.70 -2.39 -0.01 0.88 16 41 H 0.10 2.15 8.07 -2.38 -0.02 2.13 16 42 H 0.06 1.93 7.37 -2.39 -0.02 1.91 16 43 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 46 H 0.03 1.47 8.04 -2.39 -0.02 1.45 16 47 H 0.00 0.17 7.43 -2.39 -0.02 0.16 16 48 H 0.01 0.84 7.13 -2.39 -0.02 0.82 16 49 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 50 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -75.58 405.81 6.32 -69.26 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.91 Total: 6.95 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.98 Total: 5.57 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -4.33 Total: -107.82 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -75.58 6.32 -69.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273591295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.111 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds