Wall clock time and date at job start Tue Mar 31 2020 19:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46479 * 2 1 4 4 C 1.52995 * 109.47119 * 240.00244 * 2 1 3 5 5 C 1.50697 * 109.47515 * 64.99836 * 4 2 1 6 6 C 1.38253 * 119.97504 * 269.72774 * 5 4 2 7 7 C 1.38198 * 120.02579 * 179.72436 * 6 5 4 8 8 C 1.38460 * 119.97230 * 0.56441 * 7 6 5 9 9 F 1.35098 * 120.02198 * 179.68177 * 8 7 6 10 10 C 1.38461 * 119.95014 * 359.70970 * 8 7 6 11 11 C 1.38194 * 119.97359 * 359.97438 * 10 8 7 12 12 C 1.50696 * 109.47007 * 120.00028 * 2 1 3 13 13 O 1.21285 * 120.00136 * 120.00284 * 12 2 1 14 14 N 1.34780 * 120.00086 * 299.99696 * 12 2 1 15 15 C 1.46498 * 120.00160 * 0.02562 * 14 12 2 16 16 C 1.46503 * 119.99861 * 180.02562 * 14 12 2 17 17 C 1.52993 * 109.47235 * 90.00376 * 16 14 12 18 18 C 1.52998 * 109.47477 * 179.97438 * 17 16 14 19 19 N 1.46494 * 109.47250 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99622 * 90.00457 * 19 18 17 21 21 C 1.36935 * 120.00465 * 269.99975 * 19 18 17 22 22 H 1.08002 * 119.99866 * 23.05255 * 21 19 18 23 23 C 1.38808 * 120.00363 * 203.04495 * 21 19 18 24 24 N 1.31618 * 119.99853 * 12.93082 * 23 21 19 25 25 Si 1.86801 * 120.00226 * 192.93013 * 23 21 19 26 26 H 1.48497 * 109.47009 * 60.00577 * 25 23 21 27 27 H 1.48503 * 109.47004 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46919 * 300.00094 * 25 23 21 29 29 H 1.08997 * 109.46878 * 60.00228 * 1 2 3 30 30 H 1.09000 * 109.46966 * 299.99613 * 1 2 3 31 31 H 1.09007 * 109.46642 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47018 * 185.00217 * 4 2 1 33 33 H 1.09008 * 109.46921 * 304.99747 * 4 2 1 34 34 H 1.08006 * 119.98376 * 359.97438 * 6 5 4 35 35 H 1.07997 * 120.01291 * 180.25576 * 7 6 5 36 36 H 1.08003 * 120.01337 * 180.02562 * 10 8 7 37 37 H 1.07999 * 119.98793 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.47268 * 89.98974 * 15 14 12 39 39 H 1.08993 * 109.47231 * 209.99695 * 15 14 12 40 40 H 1.09004 * 109.47046 * 329.99824 * 15 14 12 41 41 H 1.08998 * 109.46724 * 210.00363 * 16 14 12 42 42 H 1.08998 * 109.47183 * 330.00097 * 16 14 12 43 43 H 1.09004 * 109.47238 * 300.00376 * 17 16 14 44 44 H 1.09000 * 109.46889 * 59.99391 * 17 16 14 45 45 H 1.08998 * 109.46932 * 300.00262 * 18 17 16 46 46 H 1.09005 * 109.46568 * 60.00182 * 18 17 16 47 47 H 1.09000 * 109.46963 * 95.12085 * 20 19 18 48 48 H 1.08998 * 109.46944 * 215.11870 * 20 19 18 49 49 H 1.09003 * 109.47157 * 335.12272 * 20 19 18 50 50 H 0.97004 * 120.00373 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 6 0.4379 -0.2093 -3.1027 7 6 0.0687 0.5076 -4.2250 8 6 0.9099 1.4850 -4.7291 9 9 0.5528 2.1821 -5.8299 10 6 2.1175 1.7471 -4.1045 11 6 2.4817 1.0334 -2.9786 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 0.8642 0.9409 2.5890 16 6 2.1956 -0.9402 3.6507 17 6 3.5432 -0.3473 4.0669 18 6 4.0534 -1.0678 5.3165 19 7 5.3440 -0.5004 5.7146 20 6 5.3914 0.6296 6.6458 21 6 6.5061 -1.0262 5.2164 22 1 6.4951 -1.5762 4.2870 23 6 7.6983 -0.8522 5.9058 24 7 7.6830 -0.4129 7.1464 25 14 9.3243 -1.2416 5.0728 26 1 9.4795 -0.3888 3.8671 27 1 10.4400 -0.9730 6.0153 28 1 9.3460 -2.6718 4.6738 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 -0.2158 -0.9753 -2.7122 35 1 -0.8734 0.3022 -4.7115 36 1 2.7743 2.5096 -4.4967 37 1 3.4234 1.2378 -2.4910 38 1 -0.1837 0.6427 2.6224 39 1 1.1219 1.4664 3.5085 40 1 1.0273 1.5997 1.7360 41 1 1.4777 -0.8151 4.4613 42 1 2.3171 -2.0015 3.4336 43 1 4.2611 -0.4724 3.2563 44 1 3.4216 0.7139 4.2839 45 1 3.3354 -0.9423 6.1269 46 1 4.1748 -2.1291 5.0997 47 1 5.5380 0.2585 7.6602 48 1 6.2175 1.2877 6.3768 49 1 4.4538 1.1832 6.5934 50 1 8.5160 -0.2917 7.6283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273591296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:32 Heat of formation + Delta-G solvation = -40.087734 kcal Electronic energy + Delta-G solvation = -28602.455759 eV Core-core repulsion = 24544.750913 eV Total energy + Delta-G solvation = -4057.704847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.21018 -40.44235 -39.34808 -36.35919 -35.38210 -35.09277 -32.37524 -31.53749 -30.97174 -29.86334 -27.32091 -26.63348 -25.98286 -25.53238 -23.64950 -23.22637 -22.11821 -21.03869 -20.16095 -19.01107 -18.00318 -17.32114 -16.69598 -16.62868 -16.19991 -15.89756 -15.62087 -15.47747 -14.85946 -14.51567 -14.46885 -14.09861 -13.99784 -13.90441 -13.65322 -13.39289 -13.18506 -12.92709 -12.74754 -12.67697 -12.47936 -12.37953 -12.12502 -11.72479 -11.66403 -11.46037 -11.31401 -11.20649 -11.13468 -10.91038 -10.75361 -10.68652 -10.41317 -10.13778 -9.81460 -9.70978 -9.65045 -9.45653 -8.87276 -8.65355 -8.43109 -6.65967 -5.65569 -3.11861 0.76138 0.85621 2.67178 2.98503 3.24026 3.44214 3.48285 3.50732 3.91513 4.22552 4.33723 4.51942 4.56192 4.56576 4.67453 4.75324 4.90117 4.91838 4.97313 5.13223 5.18594 5.35070 5.38048 5.41794 5.46411 5.48708 5.53071 5.55640 5.61409 5.68111 5.75684 5.82302 5.86451 5.87533 5.94707 6.06414 6.11819 6.20156 6.22902 6.49755 6.53007 6.66135 6.77965 6.88208 7.07503 7.41213 7.42379 7.77254 7.88079 8.22503 8.47653 9.31430 9.95031 10.43845 11.39346 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.002134 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.254059 B =13114.903430 C =14258.179262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.063 4.063 5 C -0.085 4.085 6 C -0.086 4.086 7 C -0.153 4.153 8 C 0.090 3.910 9 F -0.143 7.143 10 C -0.151 4.151 11 C -0.087 4.087 12 C 0.515 3.485 13 O -0.534 6.534 14 N -0.613 5.613 15 C 0.076 3.924 16 C 0.116 3.884 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.603 5.603 20 C 0.164 3.836 21 C -0.251 4.251 22 H 0.067 0.933 23 C -0.001 4.001 24 N -0.911 5.911 25 Si 0.904 3.096 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.030 0.970 48 H 0.038 0.962 49 H -0.005 1.005 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.338 5.072 -19.183 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.125 4.125 3 H 0.115 0.885 4 C -0.101 4.101 5 C -0.086 4.086 6 C -0.104 4.104 7 C -0.172 4.172 8 C 0.070 3.930 9 F -0.121 7.121 10 C -0.170 4.170 11 C -0.105 4.105 12 C 0.302 3.698 13 O -0.410 6.410 14 N -0.347 5.347 15 C -0.067 4.067 16 C -0.007 4.007 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.326 5.326 20 C 0.019 3.981 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.199 4.199 24 N -0.556 5.556 25 Si 0.734 3.266 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.014 0.986 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.825 4.605 -19.122 27.926 hybrid contribution 0.876 0.214 -0.597 1.082 sum -18.948 4.819 -19.719 27.769 Atomic orbital electron populations 1.22134 0.93033 1.03011 1.03467 1.21239 0.97715 1.00834 0.92680 0.88481 1.20429 1.02715 0.98022 0.88930 1.19995 0.94489 0.96916 0.97159 1.20975 0.96095 0.99006 0.94349 1.21144 1.00555 0.97076 0.98416 1.17747 0.95281 0.94132 0.85792 1.91496 1.91988 1.77689 1.50976 1.21171 0.96036 1.02259 0.97492 1.21017 0.99822 0.94636 0.94985 1.20550 0.80144 0.84685 0.84413 1.90730 1.37457 1.26442 1.86349 1.47911 1.51179 1.29213 1.06347 1.21944 0.94138 0.87446 1.03178 1.21593 0.96213 0.97664 0.85189 1.22597 0.95042 1.00163 1.01335 1.20625 0.87878 0.95995 0.92771 1.43876 1.00757 1.34881 1.53085 1.20765 0.95002 0.88450 0.93837 1.19159 0.85380 1.30981 1.02521 0.91528 1.25018 0.98389 1.01180 0.95273 1.70060 1.25651 1.51091 1.08809 0.86336 0.83476 0.78307 0.78469 1.21159 1.21672 1.20893 0.91303 0.90939 0.92077 0.89575 0.89952 0.84917 0.84833 0.84744 0.84770 0.92403 0.90863 0.91053 0.91035 0.90051 0.91825 0.92998 0.94789 0.93453 0.95150 0.94273 0.98603 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.41 37.16 0.31 -0.77 16 2 C -0.10 -0.94 1.91 -91.77 -0.18 -1.12 16 3 H 0.10 0.80 7.40 -51.93 -0.38 0.42 16 4 C -0.06 -0.59 4.19 -27.89 -0.12 -0.70 16 5 C -0.09 -0.68 4.71 -104.62 -0.49 -1.18 16 6 C -0.09 -0.61 7.98 -39.59 -0.32 -0.93 16 7 C -0.15 -1.13 10.03 -39.51 -0.40 -1.53 16 8 C 0.09 0.78 7.30 -39.42 -0.29 0.49 16 9 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 10 C -0.15 -1.21 10.03 -39.52 -0.40 -1.60 16 11 C -0.09 -0.69 9.70 -39.59 -0.38 -1.07 16 12 C 0.51 6.81 7.08 -10.99 -0.08 6.73 16 13 O -0.53 -9.37 15.50 5.55 0.09 -9.28 16 14 N -0.61 -7.47 2.87 -181.58 -0.52 -7.99 16 15 C 0.08 0.62 8.80 59.85 0.53 1.15 16 16 C 0.12 1.64 5.41 -4.04 -0.02 1.62 16 17 C -0.15 -2.69 5.86 -26.74 -0.16 -2.85 16 18 C 0.16 3.25 5.64 -4.05 -0.02 3.23 16 19 N -0.60 -15.70 2.92 -181.12 -0.53 -16.23 16 20 C 0.16 4.14 8.98 59.85 0.54 4.67 16 21 C -0.25 -7.18 9.65 -15.06 -0.15 -7.32 16 22 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 23 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 24 N -0.91 -27.29 10.71 55.49 0.59 -26.70 16 25 Si 0.90 22.64 29.57 -169.99 -5.03 17.61 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 29 H 0.07 0.41 6.28 -51.93 -0.33 0.08 16 30 H 0.07 0.43 4.53 -51.93 -0.24 0.19 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.08 0.78 8.08 -51.92 -0.42 0.36 16 34 H 0.13 0.72 8.05 -52.48 -0.42 0.30 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.06 0.37 6.95 -51.93 -0.36 0.00 16 39 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.07 0.48 6.01 -51.93 -0.31 0.17 16 41 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.08 1.28 7.42 -51.93 -0.39 0.89 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 47 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 48 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 49 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -33.94 403.30 -9.18 -43.12 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -8.20 Total: -3.98 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.70 Total: -1.29 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.46 Total: -50.92 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.94 -9.18 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273591296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.030 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds