Wall clock time and date at job start Tue Mar 31 2020 19:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47279 * 2 1 4 4 C 1.50700 * 109.46768 * 120.00200 * 2 1 3 5 5 O 1.21284 * 120.00083 * 94.79998 * 4 2 1 6 6 N 1.34783 * 119.99843 * 274.79221 * 4 2 1 7 7 C 1.46923 * 120.63013 * 4.72278 * 6 4 2 8 8 C 1.52761 * 109.00366 * 233.57944 * 7 6 4 9 9 C 1.53034 * 109.38584 * 305.58647 * 8 7 6 10 10 C 1.53039 * 109.53688 * 61.24166 * 9 8 7 11 11 C 1.52999 * 109.49808 * 178.68249 * 10 9 8 12 12 O 1.42903 * 109.47465 * 299.83964 * 11 10 9 13 13 N 1.46501 * 109.52486 * 58.60583 * 10 9 8 14 14 C 1.36937 * 119.99932 * 60.14450 * 13 10 9 15 15 H 1.07996 * 120.00052 * 359.97438 * 14 13 10 16 16 C 1.38812 * 119.99694 * 180.02562 * 14 13 10 17 17 N 1.31625 * 119.99968 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47147 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47343 * 119.99829 * 18 16 14 21 21 H 1.48498 * 109.47584 * 240.00360 * 18 16 14 22 22 C 1.46923 * 120.62704 * 184.99776 * 6 4 2 23 23 C 1.50698 * 109.47159 * 240.00091 * 2 1 3 24 24 C 1.39873 * 126.03601 * 299.99918 * 23 2 1 25 25 N 1.30847 * 108.19759 * 179.97438 * 24 23 2 26 26 N 1.40082 * 108.20796 * 0.02562 * 25 24 23 27 27 C 1.46496 * 126.03837 * 180.02562 * 26 25 24 28 28 C 1.34952 * 107.92519 * 359.97438 * 26 25 24 29 29 H 1.08997 * 109.47271 * 183.48356 * 1 2 3 30 30 H 1.08997 * 109.47048 * 303.48224 * 1 2 3 31 31 H 1.08998 * 109.47145 * 63.47954 * 1 2 3 32 32 H 1.08995 * 109.58797 * 353.40919 * 7 6 4 33 33 H 1.08998 * 109.58685 * 113.84377 * 7 6 4 34 34 H 1.09006 * 109.56126 * 185.54704 * 8 7 6 35 35 H 1.09001 * 109.38866 * 65.51808 * 8 7 6 36 36 H 1.09001 * 109.46007 * 301.22133 * 9 8 7 37 37 H 1.09006 * 109.46301 * 181.26137 * 9 8 7 38 38 H 1.09003 * 109.47134 * 59.84050 * 11 10 9 39 39 H 1.09000 * 109.47474 * 179.83819 * 11 10 9 40 40 H 0.96701 * 114.00436 * 179.97438 * 12 11 10 41 41 H 0.97000 * 119.99433 * 240.14688 * 13 10 9 42 42 H 0.97008 * 119.99590 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.58406 * 246.15423 * 22 6 4 44 44 H 1.08998 * 109.58947 * 6.58259 * 22 6 4 45 45 H 1.07994 * 125.90270 * 0.02562 * 24 23 2 46 46 H 1.09004 * 109.47001 * 89.97506 * 27 26 25 47 47 H 1.09005 * 109.47348 * 209.97489 * 27 26 25 48 48 H 1.08994 * 109.47076 * 329.97533 * 27 26 25 49 49 H 1.08000 * 126.12597 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3172 -1.8881 1.1769 6 7 2.1649 -0.0371 2.3905 7 6 1.7275 1.3614 2.4984 8 6 2.8855 2.2053 3.0279 9 6 3.3952 1.6028 4.3391 10 6 3.9067 0.1829 4.0851 11 6 4.4462 -0.4066 5.3899 12 8 5.5203 0.4041 5.8707 13 7 4.9773 0.2196 3.0858 14 6 6.1164 0.9396 3.3289 15 1 6.2255 1.4807 4.2571 16 6 7.1306 0.9747 2.3817 17 7 6.9970 0.3164 1.2498 18 14 8.6843 1.9574 2.7129 19 1 8.5875 2.6016 4.0475 20 1 9.8593 1.0497 2.6861 21 1 8.8416 3.0017 1.6689 22 6 2.7552 -0.6857 3.5692 23 6 2.0324 -0.7104 -1.2305 24 6 1.7735 -2.0408 -1.5758 25 7 2.3772 -2.2938 -2.7088 26 7 3.0407 -1.1308 -3.1204 27 6 3.8393 -0.9797 -4.3393 28 6 2.8134 -0.1738 -2.1965 29 1 -0.3634 -1.0257 0.0624 30 1 -0.3633 0.5669 0.8571 31 1 -0.3633 0.4589 -0.9195 32 1 1.4294 1.7279 1.5162 33 1 0.8853 1.4287 3.1870 34 1 2.5430 3.2249 3.2049 35 1 3.6916 2.2146 2.2943 36 1 2.5823 1.5716 5.0646 37 1 4.2068 2.2167 4.7297 38 1 3.6496 -0.4326 6.1335 39 1 4.8077 -1.4189 5.2092 40 1 5.9113 0.0893 6.6972 41 1 4.8791 -0.2661 2.2519 42 1 7.7059 0.3407 0.5880 43 1 1.9984 -0.7887 4.3469 44 1 3.1348 -1.6695 3.2933 45 1 1.1776 -2.7385 -1.0063 46 1 3.1979 -0.6453 -5.1548 47 1 4.6251 -0.2435 -4.1699 48 1 4.2890 -1.9376 -4.6001 49 1 3.1876 0.8389 -2.2233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273938013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:05 Heat of formation + Delta-G solvation = 19.850319 kcal Electronic energy + Delta-G solvation = -31349.501636 eV Core-core repulsion = 27314.315860 eV Total energy + Delta-G solvation = -4035.185776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08037 -39.85541 -37.82271 -35.69391 -34.33112 -33.68694 -32.46018 -31.76683 -31.23426 -29.28769 -28.60200 -26.37863 -25.59033 -25.32854 -23.69058 -23.17744 -21.67365 -20.87943 -20.44530 -18.81677 -18.20646 -17.26832 -16.78475 -16.55274 -16.25703 -15.36967 -15.15795 -15.05662 -14.54563 -14.19995 -14.07496 -13.89471 -13.70919 -13.45907 -13.42104 -13.11607 -12.84726 -12.70840 -12.60138 -12.43315 -12.26646 -12.06806 -11.80547 -11.75864 -11.51430 -11.39025 -11.15750 -10.79742 -10.68709 -10.35817 -10.30556 -10.19469 -10.02745 -9.84738 -9.52135 -9.29074 -9.06673 -8.94161 -8.73262 -8.16903 -8.07426 -6.81874 -5.57443 -2.84724 2.14119 2.74935 2.94621 3.23108 3.47919 3.51637 3.57923 3.60283 4.64995 4.71275 4.82507 4.95045 5.02188 5.13845 5.17539 5.19603 5.30351 5.39290 5.44479 5.46611 5.50130 5.56968 5.60044 5.68227 5.78797 5.80889 5.84916 5.87854 5.92459 5.97887 6.05847 6.10062 6.15315 6.19035 6.20067 6.39936 6.44489 6.57193 6.80156 6.92566 6.96995 7.03082 7.13707 7.22570 7.86650 7.97126 8.12115 8.37709 8.59971 8.67753 9.72076 10.24869 10.61390 11.64854 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.004687 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.832228 B = 5972.196808 C = 7681.006282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 H 0.096 0.904 4 C 0.527 3.473 5 O -0.536 6.536 6 N -0.599 5.599 7 C 0.110 3.890 8 C -0.131 4.131 9 C -0.115 4.115 10 C 0.189 3.811 11 C 0.075 3.925 12 O -0.539 6.539 13 N -0.704 5.704 14 C -0.204 4.204 15 H 0.092 0.908 16 C -0.026 4.026 17 N -0.938 5.938 18 Si 0.900 3.100 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.298 1.298 22 C 0.117 3.883 23 C -0.220 4.220 24 C 0.086 3.914 25 N -0.309 5.309 26 N -0.380 5.380 27 C 0.105 3.895 28 C 0.069 3.931 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.353 0.647 41 H 0.384 0.616 42 H 0.248 0.752 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.179 0.821 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.581 2.426 -2.084 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 H 0.114 0.886 4 C 0.315 3.685 5 O -0.412 6.412 6 N -0.332 5.332 7 C -0.013 4.013 8 C -0.169 4.169 9 C -0.155 4.155 10 C 0.095 3.905 11 C -0.006 4.006 12 O -0.342 6.342 13 N -0.345 5.345 14 C -0.335 4.335 15 H 0.110 0.890 16 C -0.220 4.220 17 N -0.588 5.588 18 Si 0.733 3.267 19 H -0.206 1.206 20 H -0.225 1.225 21 H -0.226 1.226 22 C -0.006 4.006 23 C -0.232 4.232 24 C -0.101 4.101 25 N -0.130 5.130 26 N -0.161 5.161 27 C -0.037 4.037 28 C -0.077 4.077 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.197 0.803 41 H 0.218 0.782 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.196 0.804 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.095 1.369 -3.667 14.629 hybrid contribution 1.200 0.768 1.106 1.803 sum -12.895 2.137 -2.561 13.320 Atomic orbital electron populations 1.21723 0.92663 1.02688 1.02150 1.19466 0.96543 0.99307 0.89713 0.88587 1.20427 0.77294 0.87148 0.83654 1.90659 1.50118 1.16043 1.84353 1.47837 1.61347 1.12833 1.11140 1.21707 0.96990 0.81244 1.01398 1.21754 0.98335 0.97063 0.99735 1.21834 0.99436 0.98630 0.95602 1.19954 0.88444 0.93147 0.88942 1.22722 0.88244 0.94075 0.95607 1.86839 1.51148 1.53399 1.42786 1.42422 1.15203 1.59178 1.17648 1.19609 0.92538 1.20701 1.00701 0.89019 1.24740 0.98586 1.01610 0.97038 1.69724 1.33475 1.47286 1.08363 0.86187 0.84223 0.79310 0.76985 1.20643 1.22518 1.22584 1.21643 0.94508 0.97637 0.86842 1.19409 1.09276 0.95615 0.98922 1.23612 0.98174 0.95531 0.92759 1.77314 1.14041 1.05754 1.15939 1.48312 1.40426 1.08299 1.19081 1.21788 0.94336 1.04085 0.83456 1.22263 0.98947 0.95784 0.90750 0.92043 0.92155 0.91626 0.90210 0.92178 0.92316 0.89372 0.94123 0.90788 0.95863 0.94452 0.80260 0.78179 0.94237 0.91944 0.89035 0.80398 0.91202 0.89481 0.89523 0.81098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.88 37.16 0.33 -1.10 16 2 C -0.03 -0.39 2.23 -92.92 -0.21 -0.59 16 3 H 0.10 1.25 6.42 -51.93 -0.33 0.91 16 4 C 0.53 9.15 6.79 -10.98 -0.07 9.08 16 5 O -0.54 -11.24 14.63 5.55 0.08 -11.16 16 6 N -0.60 -9.63 2.87 -173.04 -0.50 -10.13 16 7 C 0.11 1.44 5.86 -3.93 -0.02 1.42 16 8 C -0.13 -2.05 5.91 -26.84 -0.16 -2.21 16 9 C -0.12 -1.98 4.39 -26.69 -0.12 -2.09 16 10 C 0.19 3.58 0.68 -131.70 -0.09 3.49 16 11 C 0.07 1.32 6.08 37.16 0.23 1.55 16 12 O -0.54 -10.15 9.96 -35.23 -0.35 -10.50 16 13 N -0.70 -17.13 4.22 -47.12 -0.20 -17.33 16 14 C -0.20 -5.52 8.29 -15.06 -0.12 -5.65 16 15 H 0.09 2.49 5.30 -52.49 -0.28 2.22 16 16 C -0.03 -0.74 5.50 -17.43 -0.10 -0.84 16 17 N -0.94 -28.78 13.06 55.49 0.72 -28.06 16 18 Si 0.90 23.02 29.55 -169.99 -5.02 17.99 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 21 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 22 C 0.12 2.00 5.13 -3.71 -0.02 1.98 16 23 C -0.22 -3.46 4.62 -105.05 -0.49 -3.95 16 24 C 0.09 1.43 10.54 -17.36 -0.18 1.24 16 25 N -0.31 -5.35 12.58 30.63 0.39 -4.97 16 26 N -0.38 -5.73 4.01 -68.16 -0.27 -6.00 16 27 C 0.11 1.10 11.47 59.84 0.69 1.78 16 28 C 0.07 1.03 11.38 -17.22 -0.20 0.83 16 29 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.06 0.55 7.37 -51.93 -0.38 0.16 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.90 5.07 -51.93 -0.26 0.63 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.46 6.84 -51.93 -0.36 1.11 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.35 4.93 9.12 45.56 0.42 5.34 16 41 H 0.38 10.57 7.65 -40.82 -0.31 10.26 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.79 7.04 -51.93 -0.37 1.43 16 45 H 0.18 2.77 7.93 -52.49 -0.42 2.35 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -36.45 386.13 -6.76 -43.21 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -6.89 Total: 16.18 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.53 Total: 4.95 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: 0.14 Total: -66.49 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.27 Total: -21.67 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.45 -6.76 -43.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273938013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.060 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds