Wall clock time and date at job start Tue Mar 31 2020 19:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47279 * 2 1 4 4 C 1.50700 * 109.46768 * 120.00200 * 2 1 3 5 5 O 1.21284 * 120.00083 * 94.79998 * 4 2 1 6 6 N 1.34783 * 119.99843 * 274.79221 * 4 2 1 7 7 C 1.46923 * 120.63013 * 4.72278 * 6 4 2 8 8 C 1.52761 * 109.00366 * 233.57944 * 7 6 4 9 9 C 1.53034 * 109.38584 * 305.58647 * 8 7 6 10 10 C 1.53039 * 109.53688 * 61.24166 * 9 8 7 11 11 C 1.52999 * 109.49808 * 178.68249 * 10 9 8 12 12 O 1.42903 * 109.47465 * 299.83964 * 11 10 9 13 13 N 1.46501 * 109.52486 * 58.60583 * 10 9 8 14 14 C 1.36937 * 119.99932 * 60.14450 * 13 10 9 15 15 H 1.07996 * 120.00052 * 359.97438 * 14 13 10 16 16 C 1.38812 * 119.99694 * 180.02562 * 14 13 10 17 17 N 1.31625 * 119.99968 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47147 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47343 * 119.99829 * 18 16 14 21 21 H 1.48498 * 109.47584 * 240.00360 * 18 16 14 22 22 C 1.46923 * 120.62704 * 184.99776 * 6 4 2 23 23 C 1.50698 * 109.47159 * 240.00091 * 2 1 3 24 24 C 1.39873 * 126.03601 * 299.99918 * 23 2 1 25 25 N 1.30847 * 108.19759 * 179.97438 * 24 23 2 26 26 N 1.40082 * 108.20796 * 0.02562 * 25 24 23 27 27 C 1.46496 * 126.03837 * 180.02562 * 26 25 24 28 28 C 1.34952 * 107.92519 * 359.97438 * 26 25 24 29 29 H 1.08997 * 109.47271 * 183.48356 * 1 2 3 30 30 H 1.08997 * 109.47048 * 303.48224 * 1 2 3 31 31 H 1.08998 * 109.47145 * 63.47954 * 1 2 3 32 32 H 1.08995 * 109.58797 * 353.40919 * 7 6 4 33 33 H 1.08998 * 109.58685 * 113.84377 * 7 6 4 34 34 H 1.09006 * 109.56126 * 185.54704 * 8 7 6 35 35 H 1.09001 * 109.38866 * 65.51808 * 8 7 6 36 36 H 1.09001 * 109.46007 * 301.22133 * 9 8 7 37 37 H 1.09006 * 109.46301 * 181.26137 * 9 8 7 38 38 H 1.09003 * 109.47134 * 59.84050 * 11 10 9 39 39 H 1.09000 * 109.47474 * 179.83819 * 11 10 9 40 40 H 0.96701 * 114.00436 * 179.97438 * 12 11 10 41 41 H 0.97000 * 119.99433 * 240.14688 * 13 10 9 42 42 H 0.97008 * 119.99590 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.58406 * 246.15423 * 22 6 4 44 44 H 1.08998 * 109.58947 * 6.58259 * 22 6 4 45 45 H 1.07994 * 125.90270 * 0.02562 * 24 23 2 46 46 H 1.09004 * 109.47001 * 89.97506 * 27 26 25 47 47 H 1.09005 * 109.47348 * 209.97489 * 27 26 25 48 48 H 1.08994 * 109.47076 * 329.97533 * 27 26 25 49 49 H 1.08000 * 126.12597 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3172 -1.8881 1.1769 6 7 2.1649 -0.0371 2.3905 7 6 1.7275 1.3614 2.4984 8 6 2.8855 2.2053 3.0279 9 6 3.3952 1.6028 4.3391 10 6 3.9067 0.1829 4.0851 11 6 4.4462 -0.4066 5.3899 12 8 5.5203 0.4041 5.8707 13 7 4.9773 0.2196 3.0858 14 6 6.1164 0.9396 3.3289 15 1 6.2255 1.4807 4.2571 16 6 7.1306 0.9747 2.3817 17 7 6.9970 0.3164 1.2498 18 14 8.6843 1.9574 2.7129 19 1 8.5875 2.6016 4.0475 20 1 9.8593 1.0497 2.6861 21 1 8.8416 3.0017 1.6689 22 6 2.7552 -0.6857 3.5692 23 6 2.0324 -0.7104 -1.2305 24 6 1.7735 -2.0408 -1.5758 25 7 2.3772 -2.2938 -2.7088 26 7 3.0407 -1.1308 -3.1204 27 6 3.8393 -0.9797 -4.3393 28 6 2.8134 -0.1738 -2.1965 29 1 -0.3634 -1.0257 0.0624 30 1 -0.3633 0.5669 0.8571 31 1 -0.3633 0.4589 -0.9195 32 1 1.4294 1.7279 1.5162 33 1 0.8853 1.4287 3.1870 34 1 2.5430 3.2249 3.2049 35 1 3.6916 2.2146 2.2943 36 1 2.5823 1.5716 5.0646 37 1 4.2068 2.2167 4.7297 38 1 3.6496 -0.4326 6.1335 39 1 4.8077 -1.4189 5.2092 40 1 5.9113 0.0893 6.6972 41 1 4.8791 -0.2661 2.2519 42 1 7.7059 0.3407 0.5880 43 1 1.9984 -0.7887 4.3469 44 1 3.1348 -1.6695 3.2933 45 1 1.1776 -2.7385 -1.0063 46 1 3.1979 -0.6453 -5.1548 47 1 4.6251 -0.2435 -4.1699 48 1 4.2890 -1.9376 -4.6001 49 1 3.1876 0.8389 -2.2233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273938013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:04 Heat of formation + Delta-G solvation = -8.047513 kcal Electronic energy + Delta-G solvation = -31350.711376 eV Core-core repulsion = 27314.315860 eV Total energy + Delta-G solvation = -4036.395517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25278 -41.16619 -39.26459 -37.08029 -35.64244 -35.22688 -33.82474 -33.19959 -32.62499 -30.62639 -30.20595 -27.36187 -26.88098 -26.59027 -25.59729 -24.46106 -22.96563 -22.04315 -21.66919 -20.19722 -19.54243 -19.11790 -18.02553 -17.90473 -17.64616 -16.72258 -16.50145 -16.31357 -15.96775 -15.75841 -15.44148 -15.24822 -15.01670 -14.86325 -14.68982 -14.66481 -14.12484 -13.81992 -13.72123 -13.47759 -13.42852 -13.39787 -13.26646 -12.93260 -12.86559 -12.66581 -12.57727 -12.47169 -12.42455 -11.94508 -11.75845 -11.62335 -11.45090 -11.40185 -11.26905 -10.77162 -10.54317 -10.51681 -10.26352 -9.43206 -9.26091 -8.83674 -7.75492 -5.00398 0.97605 1.45773 1.47847 1.57290 1.63989 1.76935 1.96865 2.28447 2.66067 3.46197 3.61025 3.67892 3.72970 3.86211 4.00473 4.06903 4.18514 4.24602 4.31228 4.34624 4.37599 4.43193 4.46427 4.47632 4.57232 4.63304 4.66136 4.70443 4.75220 4.86127 4.87524 4.90752 4.97472 5.06605 5.08113 5.10687 5.20384 5.38303 5.41738 5.63942 5.69179 5.74153 5.77108 5.94243 6.16877 6.45927 6.62653 6.77024 7.14873 7.38796 7.52464 8.24716 8.48253 9.48303 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.004687 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.832228 B = 5972.196808 C = 7681.006282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 H 0.108 0.892 4 C 0.517 3.483 5 O -0.583 6.583 6 N -0.599 5.599 7 C 0.109 3.891 8 C -0.127 4.127 9 C -0.108 4.108 10 C 0.176 3.824 11 C 0.075 3.925 12 O -0.566 6.566 13 N -0.714 5.714 14 C -0.173 4.173 15 H 0.094 0.906 16 C -0.096 4.096 17 N -0.979 5.979 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.309 1.309 21 H -0.302 1.302 22 C 0.121 3.879 23 C -0.237 4.237 24 C 0.071 3.929 25 N -0.341 5.341 26 N -0.383 5.383 27 C 0.095 3.905 28 C 0.062 3.938 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.375 0.625 41 H 0.363 0.637 42 H 0.237 0.763 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.178 0.822 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 4.660 -0.619 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.043 4.043 3 H 0.126 0.874 4 C 0.307 3.693 5 O -0.463 6.463 6 N -0.331 5.331 7 C -0.012 4.012 8 C -0.165 4.165 9 C -0.147 4.147 10 C 0.085 3.915 11 C -0.005 4.005 12 O -0.371 6.371 13 N -0.352 5.352 14 C -0.306 4.306 15 H 0.112 0.888 16 C -0.286 4.286 17 N -0.634 5.634 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.238 1.238 21 H -0.230 1.230 22 C -0.003 4.003 23 C -0.249 4.249 24 C -0.114 4.114 25 N -0.164 5.164 26 N -0.165 5.165 27 C -0.045 4.045 28 C -0.085 4.085 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.223 0.777 41 H 0.195 0.805 42 H 0.046 0.954 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.195 0.805 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.104 0.896 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -16.395 3.645 -2.122 16.929 hybrid contribution 1.872 0.059 0.763 2.022 sum -14.523 3.704 -1.360 15.050 Atomic orbital electron populations 1.21704 0.89832 1.02758 1.04060 1.19526 0.98729 0.98862 0.87172 0.87367 1.21115 0.76627 0.86848 0.84750 1.90636 1.52281 1.18292 1.85107 1.47980 1.60585 1.14001 1.10488 1.21973 0.96817 0.78762 1.03697 1.21692 0.97823 0.99355 0.97630 1.21726 0.99659 0.96133 0.97218 1.20387 0.87747 0.95142 0.88269 1.22636 0.89235 0.92601 0.96017 1.86724 1.51885 1.54047 1.44491 1.42568 1.16078 1.58452 1.18058 1.19845 0.92707 1.18327 0.99675 0.88815 1.25388 1.01657 1.04021 0.97526 1.69893 1.33934 1.50097 1.09463 0.85255 0.80891 0.77786 0.77106 1.19262 1.23777 1.22989 1.21564 0.94845 0.95643 0.88213 1.19725 1.09786 0.95456 0.99893 1.23721 0.98527 0.96303 0.92870 1.77221 1.15164 1.07328 1.16656 1.48695 1.40075 1.07620 1.20069 1.22134 0.94943 1.04662 0.82748 1.22751 0.98436 0.96799 0.90545 0.93003 0.89802 0.89999 0.88015 0.88195 0.89293 0.94297 0.90279 0.93676 0.91411 0.96266 0.77722 0.80547 0.95403 0.88017 0.92450 0.80534 0.88486 0.87952 0.89648 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.88 71.98 0.64 -1.71 16 2 C -0.02 -0.55 2.23 -12.29 -0.03 -0.57 16 3 H 0.11 2.57 6.42 -2.39 -0.02 2.56 16 4 C 0.52 17.77 6.79 87.66 0.60 18.36 16 5 O -0.58 -25.35 14.63 -3.04 -0.04 -25.39 16 6 N -0.60 -18.14 2.87 -819.75 -2.36 -20.49 16 7 C 0.11 2.42 5.86 86.22 0.51 2.93 16 8 C -0.13 -3.60 5.91 30.53 0.18 -3.42 16 9 C -0.11 -3.37 4.39 30.62 0.13 -3.24 16 10 C 0.18 6.41 0.68 3.68 0.00 6.41 16 11 C 0.08 2.52 6.08 71.98 0.44 2.96 16 12 O -0.57 -20.31 9.96 -148.98 -1.48 -21.79 16 13 N -0.71 -35.16 4.22 -303.00 -1.28 -36.44 16 14 C -0.17 -9.45 8.29 84.03 0.70 -8.75 16 15 H 0.09 5.06 5.30 -2.91 -0.02 5.05 16 16 C -0.10 -5.67 5.50 84.86 0.47 -5.21 16 17 N -0.98 -62.36 13.06 21.65 0.28 -62.08 16 18 Si 0.96 48.43 29.55 68.60 2.03 50.46 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 21 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 22 C 0.12 3.94 5.13 86.36 0.44 4.38 16 23 C -0.24 -7.45 4.62 -20.14 -0.09 -7.55 16 24 C 0.07 2.46 10.54 85.24 0.90 3.36 16 25 N -0.34 -12.17 12.58 -57.02 -0.72 -12.89 16 26 N -0.38 -11.56 4.01 -369.57 -1.48 -13.05 16 27 C 0.10 1.92 11.47 127.77 1.47 3.39 16 28 C 0.06 1.82 11.38 83.54 0.95 2.77 16 29 H 0.05 1.08 8.11 -2.39 -0.02 1.06 16 30 H 0.08 1.16 7.37 -2.39 -0.02 1.15 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.84 5.07 -2.39 -0.01 1.83 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 1.68 6.84 -2.38 -0.02 1.66 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.38 9.71 9.12 -74.06 -0.68 9.03 16 41 H 0.36 20.75 7.65 -92.71 -0.71 20.04 16 42 H 0.24 14.94 8.31 -92.70 -0.77 14.17 16 43 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 44 H 0.06 2.29 7.04 -2.39 -0.02 2.27 16 45 H 0.18 5.85 7.93 -2.91 -0.02 5.83 16 46 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -84.40 386.13 1.84 -82.57 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.41 Total: 45.00 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 7.30 Total: 14.10 kcal Atomic # 7 Polarization: -139.39 SS G_CDS: -5.55 Total: -144.94 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.53 Total: -47.18 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -84.40 1.84 -82.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273938013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.518 kcal (2) G-P(sol) polarization free energy of solvation -84.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds