Wall clock time and date at job start Tue Mar 31 2020 19:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47541 * 2 1 4 4 C 1.50697 * 109.47348 * 239.99798 * 2 1 3 5 5 O 1.21284 * 120.00429 * 334.60791 * 4 2 1 6 6 N 1.34780 * 119.99952 * 154.60509 * 4 2 1 7 7 C 1.46924 * 120.63260 * 4.97083 * 6 4 2 8 8 C 1.53622 * 108.54890 * 126.36397 * 7 6 4 9 9 C 1.53039 * 109.23794 * 54.85481 * 8 7 6 10 10 C 1.53039 * 109.54171 * 298.51431 * 9 8 7 11 11 C 1.53004 * 109.49878 * 181.31394 * 10 9 8 12 12 O 1.42903 * 109.46728 * 65.16191 * 11 10 9 13 13 N 1.46504 * 109.52468 * 301.39657 * 10 9 8 14 14 C 1.36931 * 119.99620 * 299.85347 * 13 10 9 15 15 H 1.07995 * 120.00444 * 0.02562 * 14 13 10 16 16 C 1.38821 * 120.00013 * 179.97438 * 14 13 10 17 17 N 1.31628 * 119.99405 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00131 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47097 * 90.00222 * 18 16 14 20 20 H 1.48503 * 109.46782 * 209.99742 * 18 16 14 21 21 H 1.48491 * 109.47414 * 330.00129 * 18 16 14 22 22 C 1.46923 * 120.63052 * 185.24751 * 6 4 2 23 23 C 1.50709 * 109.46885 * 120.00010 * 2 1 3 24 24 C 1.39862 * 126.03792 * 59.69550 * 23 2 1 25 25 N 1.30841 * 108.20249 * 179.81717 * 24 23 2 26 26 N 1.40093 * 108.20129 * 0.43893 * 25 24 23 27 27 C 1.46502 * 126.03421 * 179.70018 * 26 25 24 28 28 C 1.34943 * 107.92500 * 359.71401 * 26 25 24 29 29 H 1.09000 * 109.47102 * 175.08181 * 1 2 3 30 30 H 1.08992 * 109.47468 * 295.08744 * 1 2 3 31 31 H 1.09006 * 109.46890 * 55.08941 * 1 2 3 32 32 H 1.09000 * 109.58742 * 246.20177 * 7 6 4 33 33 H 1.09001 * 109.58497 * 6.62215 * 7 6 4 34 34 H 1.09000 * 109.63433 * 294.87042 * 8 7 6 35 35 H 1.08990 * 109.46254 * 174.74123 * 8 7 6 36 36 H 1.08999 * 109.46301 * 178.49303 * 9 8 7 37 37 H 1.09001 * 109.45933 * 58.53337 * 9 8 7 38 38 H 1.09004 * 109.47118 * 185.15729 * 11 10 9 39 39 H 1.08999 * 109.47229 * 305.16459 * 11 10 9 40 40 H 0.96703 * 113.99424 * 179.97438 * 12 11 10 41 41 H 0.96994 * 120.00055 * 119.85443 * 13 10 9 42 42 H 0.97001 * 119.99293 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.58816 * 353.37338 * 22 6 4 44 44 H 1.09004 * 109.58942 * 113.80155 * 22 6 4 45 45 H 1.07997 * 125.90314 * 359.97438 * 24 23 2 46 46 H 1.08995 * 109.46737 * 270.01909 * 27 26 25 47 47 H 1.09001 * 109.47248 * 30.01989 * 27 26 25 48 48 H 1.09007 * 109.46494 * 150.02081 * 27 26 25 49 49 H 1.08004 * 126.12694 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3400 -1.5445 -1.7743 6 7 3.2511 -0.4188 -1.7265 7 6 4.1451 0.5081 -1.0193 8 6 5.4973 -0.1876 -0.8013 9 6 6.0362 -0.6754 -2.1481 10 6 5.0636 -1.6917 -2.7508 11 6 5.6192 -2.2032 -4.0815 12 8 6.8247 -2.9332 -3.8452 13 7 4.8951 -2.8160 -1.8267 14 6 5.9774 -3.5729 -1.4651 15 1 6.9551 -3.3410 -1.8607 16 6 5.8179 -4.6379 -0.5890 17 7 4.6265 -4.9197 -0.1057 18 14 7.2943 -5.6701 -0.0951 19 1 7.9214 -5.0882 1.1187 20 1 6.8534 -7.0587 0.1928 21 1 8.2818 -5.6841 -1.2040 22 6 3.7086 -1.0173 -2.9879 23 6 2.0323 -0.7105 1.2306 24 6 1.7685 -2.0391 1.5789 25 7 2.3775 -2.2941 2.7085 26 7 3.0408 -1.1309 3.1203 27 6 3.8398 -0.9800 4.3390 28 6 2.8135 -0.1739 2.1964 29 1 -0.3633 -1.0239 -0.0881 30 1 -0.3634 0.4357 0.9306 31 1 -0.3633 0.5882 -0.8428 32 1 4.2863 1.4080 -1.6180 33 1 3.7092 0.7726 -0.0558 34 1 5.3680 -1.0379 -0.1317 35 1 6.2020 0.5180 -0.3615 36 1 7.0083 -1.1461 -2.0013 37 1 6.1419 0.1720 -2.8254 38 1 4.8857 -2.8563 -4.5544 39 1 5.8289 -1.3578 -4.7367 40 1 7.2331 -3.2881 -4.6467 41 1 4.0171 -3.0241 -1.4711 42 1 4.5150 -5.6641 0.5061 43 1 2.9847 -1.7597 -3.3239 44 1 3.8151 -0.2393 -3.7440 45 1 1.1681 -2.7352 1.0121 46 1 3.1986 -0.6461 5.1547 47 1 4.2899 -1.9380 4.5993 48 1 4.6254 -0.2435 4.1694 49 1 3.1882 0.8387 2.2230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273938016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:16 Heat of formation + Delta-G solvation = 22.253330 kcal Electronic energy + Delta-G solvation = -32115.119248 eV Core-core repulsion = 28080.037674 eV Total energy + Delta-G solvation = -4035.081574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05887 -39.76581 -37.82048 -35.65913 -34.25125 -33.60419 -32.30700 -31.79190 -31.14944 -29.15406 -28.59349 -26.33194 -25.67369 -25.27026 -23.55180 -22.98198 -21.69984 -20.82991 -20.41781 -18.76906 -18.08903 -17.24229 -17.01856 -16.33641 -16.18981 -15.40031 -15.03544 -14.92360 -14.66304 -14.09974 -14.00578 -13.94522 -13.70860 -13.41373 -13.22023 -12.95548 -12.79419 -12.65793 -12.51552 -12.38880 -12.26917 -11.95653 -11.75942 -11.74452 -11.41198 -11.31038 -11.01796 -10.72667 -10.63691 -10.30663 -10.26894 -10.12504 -10.00323 -9.81467 -9.41855 -9.37073 -9.03196 -8.89123 -8.65078 -8.11862 -8.00445 -6.72483 -5.47203 -2.74099 2.18101 2.80563 3.03252 3.29357 3.46230 3.55768 3.61810 3.64359 4.71678 4.77692 4.87310 4.93936 4.99678 5.17588 5.21052 5.23491 5.29896 5.42695 5.47388 5.50422 5.51856 5.61898 5.69078 5.74017 5.82300 5.87596 5.93937 5.96286 5.98722 6.02899 6.12509 6.16460 6.19410 6.20831 6.28375 6.43347 6.49948 6.61348 6.82524 6.99228 7.02014 7.05090 7.16551 7.27527 7.88285 8.09018 8.19944 8.42791 8.67401 8.69944 9.81497 10.34064 10.71026 11.74462 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.005991 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.293280 B = 4672.780083 C = 6219.714678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.025 4.025 3 H 0.088 0.912 4 C 0.528 3.472 5 O -0.539 6.539 6 N -0.596 5.596 7 C 0.112 3.888 8 C -0.125 4.125 9 C -0.117 4.117 10 C 0.190 3.810 11 C 0.074 3.926 12 O -0.534 6.534 13 N -0.701 5.701 14 C -0.206 4.206 15 H 0.089 0.911 16 C -0.022 4.022 17 N -0.930 5.930 18 Si 0.897 3.103 19 H -0.298 1.298 20 H -0.297 1.297 21 H -0.284 1.284 22 C 0.115 3.885 23 C -0.227 4.227 24 C 0.082 3.918 25 N -0.281 5.281 26 N -0.376 5.376 27 C 0.105 3.895 28 C 0.057 3.943 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.022 0.978 40 H 0.349 0.651 41 H 0.385 0.615 42 H 0.249 0.751 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.180 0.820 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 17.007 1.263 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.047 4.047 3 H 0.106 0.894 4 C 0.315 3.685 5 O -0.415 6.415 6 N -0.328 5.328 7 C -0.011 4.011 8 C -0.164 4.164 9 C -0.156 4.156 10 C 0.096 3.904 11 C -0.008 4.008 12 O -0.337 6.337 13 N -0.341 5.341 14 C -0.337 4.337 15 H 0.107 0.893 16 C -0.217 4.217 17 N -0.580 5.580 18 Si 0.730 3.270 19 H -0.226 1.226 20 H -0.224 1.224 21 H -0.210 1.210 22 C -0.008 4.008 23 C -0.239 4.239 24 C -0.105 4.105 25 N -0.101 5.101 26 N -0.158 5.158 27 C -0.036 4.036 28 C -0.090 4.090 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.194 0.806 41 H 0.220 0.780 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.197 0.803 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.114 15.751 2.697 16.281 hybrid contribution 0.877 -0.270 -0.796 1.215 sum -2.237 15.482 1.901 15.757 Atomic orbital electron populations 1.21620 0.92468 1.03438 1.01101 1.19495 0.97126 0.98270 0.89831 0.89365 1.20460 0.80863 0.82396 0.84731 1.90670 1.56886 1.32927 1.61049 1.47798 1.15277 1.45881 1.23891 1.21824 0.91452 0.91383 0.96417 1.21840 0.94287 1.00715 0.99511 1.21871 1.00972 0.97342 0.95462 1.19925 0.91346 0.89262 0.89873 1.22744 0.87080 0.93133 0.97810 1.86947 1.39492 1.73491 1.33719 1.42366 1.09252 1.30924 1.51572 1.19482 0.89477 1.06091 1.18675 0.89294 1.24724 0.95947 0.99694 1.01330 1.69686 1.20305 1.31481 1.36490 0.86313 0.82698 0.79976 0.77966 1.22637 1.22419 1.21037 1.21671 0.96738 0.97383 0.85037 1.19447 1.09492 0.95870 0.99116 1.23677 0.98129 0.95223 0.93481 1.77485 1.12259 1.04490 1.15896 1.48372 1.40287 1.08276 1.18823 1.21764 0.94160 1.04166 0.83547 1.22086 1.00229 0.95415 0.91265 0.91135 0.92242 0.92678 0.92447 0.90452 0.89368 0.92724 0.90989 0.94211 0.94649 0.96006 0.80615 0.78023 0.94138 0.88944 0.91988 0.80348 0.91252 0.89318 0.89851 0.81564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.68 37.16 0.32 -1.28 16 2 C -0.02 -0.34 2.24 -92.92 -0.21 -0.55 16 3 H 0.09 0.95 6.69 -51.93 -0.35 0.61 16 4 C 0.53 9.22 6.65 -10.99 -0.07 9.15 16 5 O -0.54 -11.35 15.41 5.55 0.09 -11.26 16 6 N -0.60 -9.82 2.86 -172.50 -0.49 -10.31 16 7 C 0.11 1.54 6.16 -3.49 -0.02 1.52 16 8 C -0.13 -2.06 5.95 -26.39 -0.16 -2.22 16 9 C -0.12 -2.06 4.43 -26.69 -0.12 -2.18 16 10 C 0.19 3.69 0.68 -131.69 -0.09 3.60 16 11 C 0.07 1.33 6.09 37.16 0.23 1.55 16 12 O -0.53 -10.45 9.91 -35.23 -0.35 -10.80 16 13 N -0.70 -17.47 4.22 -47.12 -0.20 -17.67 16 14 C -0.21 -5.72 8.14 -15.06 -0.12 -5.84 16 15 H 0.09 2.48 5.29 -52.49 -0.28 2.21 16 16 C -0.02 -0.66 5.50 -17.42 -0.10 -0.76 16 17 N -0.93 -29.26 13.06 55.49 0.72 -28.53 16 18 Si 0.90 23.74 29.55 -169.99 -5.02 18.71 16 19 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 20 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 21 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 22 C 0.11 1.99 5.15 -3.71 -0.02 1.97 16 23 C -0.23 -3.49 4.42 -105.05 -0.46 -3.96 16 24 C 0.08 1.54 11.62 -17.37 -0.20 1.34 16 25 N -0.28 -5.46 12.58 30.62 0.39 -5.08 16 26 N -0.38 -5.74 4.01 -68.16 -0.27 -6.02 16 27 C 0.11 1.13 11.47 59.85 0.69 1.82 16 28 C 0.06 0.76 10.47 -17.22 -0.18 0.58 16 29 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.93 4.50 -51.93 -0.23 0.70 16 34 H 0.09 1.89 7.53 -51.93 -0.39 1.50 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.46 6.98 -51.93 -0.36 1.10 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.35 5.13 9.12 45.56 0.42 5.54 16 41 H 0.39 10.87 7.65 -40.82 -0.31 10.56 16 42 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 43 H 0.09 1.82 7.00 -51.93 -0.36 1.45 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.18 3.47 8.06 -52.49 -0.42 3.04 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.17 1.52 8.00 -52.48 -0.42 1.10 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -37.07 386.95 -6.73 -43.79 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -6.90 Total: 16.59 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.52 Total: 4.73 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: 0.14 Total: -67.61 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.26 Total: -22.06 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.07 -6.73 -43.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273938016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.048 kcal (2) G-P(sol) polarization free energy of solvation -37.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds