Wall clock time and date at job start Tue Mar 31 2020 19:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47541 * 2 1 4 4 C 1.50697 * 109.47348 * 239.99798 * 2 1 3 5 5 O 1.21284 * 120.00429 * 334.60791 * 4 2 1 6 6 N 1.34780 * 119.99952 * 154.60509 * 4 2 1 7 7 C 1.46924 * 120.63260 * 4.97083 * 6 4 2 8 8 C 1.53622 * 108.54890 * 126.36397 * 7 6 4 9 9 C 1.53039 * 109.23794 * 54.85481 * 8 7 6 10 10 C 1.53039 * 109.54171 * 298.51431 * 9 8 7 11 11 C 1.53004 * 109.49878 * 181.31394 * 10 9 8 12 12 O 1.42903 * 109.46728 * 65.16191 * 11 10 9 13 13 N 1.46504 * 109.52468 * 301.39657 * 10 9 8 14 14 C 1.36931 * 119.99620 * 299.85347 * 13 10 9 15 15 H 1.07995 * 120.00444 * 0.02562 * 14 13 10 16 16 C 1.38821 * 120.00013 * 179.97438 * 14 13 10 17 17 N 1.31628 * 119.99405 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00131 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47097 * 90.00222 * 18 16 14 20 20 H 1.48503 * 109.46782 * 209.99742 * 18 16 14 21 21 H 1.48491 * 109.47414 * 330.00129 * 18 16 14 22 22 C 1.46923 * 120.63052 * 185.24751 * 6 4 2 23 23 C 1.50709 * 109.46885 * 120.00010 * 2 1 3 24 24 C 1.39862 * 126.03792 * 59.69550 * 23 2 1 25 25 N 1.30841 * 108.20249 * 179.81717 * 24 23 2 26 26 N 1.40093 * 108.20129 * 0.43893 * 25 24 23 27 27 C 1.46502 * 126.03421 * 179.70018 * 26 25 24 28 28 C 1.34943 * 107.92500 * 359.71401 * 26 25 24 29 29 H 1.09000 * 109.47102 * 175.08181 * 1 2 3 30 30 H 1.08992 * 109.47468 * 295.08744 * 1 2 3 31 31 H 1.09006 * 109.46890 * 55.08941 * 1 2 3 32 32 H 1.09000 * 109.58742 * 246.20177 * 7 6 4 33 33 H 1.09001 * 109.58497 * 6.62215 * 7 6 4 34 34 H 1.09000 * 109.63433 * 294.87042 * 8 7 6 35 35 H 1.08990 * 109.46254 * 174.74123 * 8 7 6 36 36 H 1.08999 * 109.46301 * 178.49303 * 9 8 7 37 37 H 1.09001 * 109.45933 * 58.53337 * 9 8 7 38 38 H 1.09004 * 109.47118 * 185.15729 * 11 10 9 39 39 H 1.08999 * 109.47229 * 305.16459 * 11 10 9 40 40 H 0.96703 * 113.99424 * 179.97438 * 12 11 10 41 41 H 0.96994 * 120.00055 * 119.85443 * 13 10 9 42 42 H 0.97001 * 119.99293 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.58816 * 353.37338 * 22 6 4 44 44 H 1.09004 * 109.58942 * 113.80155 * 22 6 4 45 45 H 1.07997 * 125.90314 * 359.97438 * 24 23 2 46 46 H 1.08995 * 109.46737 * 270.01909 * 27 26 25 47 47 H 1.09001 * 109.47248 * 30.01989 * 27 26 25 48 48 H 1.09007 * 109.46494 * 150.02081 * 27 26 25 49 49 H 1.08004 * 126.12694 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3400 -1.5445 -1.7743 6 7 3.2511 -0.4188 -1.7265 7 6 4.1451 0.5081 -1.0193 8 6 5.4973 -0.1876 -0.8013 9 6 6.0362 -0.6754 -2.1481 10 6 5.0636 -1.6917 -2.7508 11 6 5.6192 -2.2032 -4.0815 12 8 6.8247 -2.9332 -3.8452 13 7 4.8951 -2.8160 -1.8267 14 6 5.9774 -3.5729 -1.4651 15 1 6.9551 -3.3410 -1.8607 16 6 5.8179 -4.6379 -0.5890 17 7 4.6265 -4.9197 -0.1057 18 14 7.2943 -5.6701 -0.0951 19 1 7.9214 -5.0882 1.1187 20 1 6.8534 -7.0587 0.1928 21 1 8.2818 -5.6841 -1.2040 22 6 3.7086 -1.0173 -2.9879 23 6 2.0323 -0.7105 1.2306 24 6 1.7685 -2.0391 1.5789 25 7 2.3775 -2.2941 2.7085 26 7 3.0408 -1.1309 3.1203 27 6 3.8398 -0.9800 4.3390 28 6 2.8135 -0.1739 2.1964 29 1 -0.3633 -1.0239 -0.0881 30 1 -0.3634 0.4357 0.9306 31 1 -0.3633 0.5882 -0.8428 32 1 4.2863 1.4080 -1.6180 33 1 3.7092 0.7726 -0.0558 34 1 5.3680 -1.0379 -0.1317 35 1 6.2020 0.5180 -0.3615 36 1 7.0083 -1.1461 -2.0013 37 1 6.1419 0.1720 -2.8254 38 1 4.8857 -2.8563 -4.5544 39 1 5.8289 -1.3578 -4.7367 40 1 7.2331 -3.2881 -4.6467 41 1 4.0171 -3.0241 -1.4711 42 1 4.5150 -5.6641 0.5061 43 1 2.9847 -1.7597 -3.3239 44 1 3.8151 -0.2393 -3.7440 45 1 1.1681 -2.7352 1.0121 46 1 3.1986 -0.6461 5.1547 47 1 4.2899 -1.9380 4.5993 48 1 4.6254 -0.2435 4.1694 49 1 3.1882 0.8387 2.2230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273938016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:15 Heat of formation + Delta-G solvation = -7.287221 kcal Electronic energy + Delta-G solvation = -32116.400222 eV Core-core repulsion = 28080.037674 eV Total energy + Delta-G solvation = -4036.362548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26415 -41.09914 -39.28969 -37.08376 -35.59255 -35.20709 -33.72312 -33.27069 -32.57833 -30.49927 -30.26955 -27.37542 -27.00367 -26.55712 -25.56653 -24.28654 -23.03002 -22.03763 -21.63838 -20.22451 -19.41136 -19.12841 -18.24389 -17.87049 -17.50620 -16.75810 -16.47005 -16.16490 -16.05924 -15.79127 -15.35339 -15.30634 -15.21009 -14.80306 -14.71135 -14.46925 -14.04117 -13.88915 -13.64933 -13.53758 -13.42601 -13.36462 -13.21124 -12.96876 -12.86395 -12.66220 -12.57180 -12.48663 -12.32445 -11.97574 -11.72011 -11.64595 -11.46085 -11.33450 -11.22508 -10.80231 -10.62473 -10.52458 -10.26477 -9.40927 -9.19614 -8.80885 -7.72755 -4.97062 1.05162 1.40893 1.42931 1.51903 1.64635 1.81679 2.01926 2.24888 2.64862 3.46361 3.65492 3.71031 3.74932 3.90515 4.00087 4.08042 4.21216 4.22278 4.29299 4.33687 4.40183 4.46550 4.47732 4.48392 4.58308 4.61167 4.68568 4.70576 4.74695 4.85973 4.91088 4.92279 4.96360 5.06357 5.07695 5.11638 5.18516 5.36786 5.44529 5.60889 5.69460 5.71697 5.76881 5.94088 6.27816 6.46155 6.63476 6.83205 7.15471 7.39008 7.53605 8.27868 8.50595 9.49623 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.005991 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.293280 B = 4672.780083 C = 6219.714678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 H 0.135 0.865 4 C 0.516 3.484 5 O -0.590 6.590 6 N -0.598 5.598 7 C 0.112 3.888 8 C -0.121 4.121 9 C -0.110 4.110 10 C 0.175 3.825 11 C 0.074 3.926 12 O -0.564 6.564 13 N -0.711 5.711 14 C -0.171 4.171 15 H 0.093 0.907 16 C -0.096 4.096 17 N -0.971 5.971 18 Si 0.952 3.048 19 H -0.299 1.299 20 H -0.311 1.311 21 H -0.271 1.271 22 C 0.118 3.882 23 C -0.239 4.239 24 C 0.053 3.947 25 N -0.337 5.337 26 N -0.377 5.377 27 C 0.095 3.905 28 C 0.078 3.922 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.029 0.971 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.372 0.628 41 H 0.363 0.637 42 H 0.233 0.767 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.147 0.853 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.119 0.881 49 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 22.323 0.743 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.037 4.037 3 H 0.153 0.847 4 C 0.306 3.694 5 O -0.470 6.470 6 N -0.329 5.329 7 C -0.009 4.009 8 C -0.159 4.159 9 C -0.149 4.149 10 C 0.084 3.916 11 C -0.006 4.006 12 O -0.370 6.370 13 N -0.349 5.349 14 C -0.303 4.303 15 H 0.110 0.890 16 C -0.286 4.286 17 N -0.625 5.625 18 Si 0.786 3.214 19 H -0.227 1.227 20 H -0.239 1.239 21 H -0.197 1.197 22 C -0.006 4.006 23 C -0.251 4.251 24 C -0.133 4.133 25 N -0.159 5.159 26 N -0.158 5.158 27 C -0.045 4.045 28 C -0.069 4.069 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.220 0.780 41 H 0.194 0.806 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.164 0.836 46 H 0.115 0.885 47 H 0.087 0.913 48 H 0.138 0.862 49 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.134 21.123 2.127 21.260 hybrid contribution 0.365 -1.842 -0.718 2.011 sum -0.769 19.281 1.409 19.348 Atomic orbital electron populations 1.21592 0.92028 1.01785 1.02802 1.19559 0.97532 0.99635 0.86931 0.84724 1.21259 0.80943 0.81894 0.85334 1.90648 1.58517 1.35147 1.62686 1.47973 1.15376 1.45881 1.23666 1.22098 0.89070 0.91548 0.98221 1.21756 0.96932 0.99572 0.97630 1.21767 0.98402 0.97721 0.97022 1.20405 0.93558 0.88249 0.89422 1.22669 0.86317 0.94326 0.97300 1.86813 1.40006 1.74115 1.36047 1.42522 1.07322 1.32491 1.52532 1.19737 0.90151 1.04589 1.15869 0.88966 1.25380 0.97887 1.02077 1.03270 1.69890 1.22264 1.32114 1.38256 0.85390 0.80376 0.77868 0.77803 1.22733 1.23914 1.19654 1.21615 0.94355 0.97873 0.86730 1.19601 1.10527 0.94410 1.00540 1.23500 0.98868 0.96937 0.93956 1.77364 1.14210 1.07474 1.16854 1.48741 1.39580 1.07437 1.20082 1.22156 0.95159 1.04324 0.82869 1.22891 0.97918 0.96887 0.89235 0.94552 0.89997 0.91353 0.87843 0.88351 0.95196 0.89462 0.94039 0.89921 0.96149 0.91327 0.78029 0.80551 0.95799 0.92419 0.87577 0.83554 0.88511 0.91251 0.86248 0.75845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.68 71.98 0.63 -2.38 16 2 C -0.01 -0.37 2.24 -12.29 -0.03 -0.40 16 3 H 0.14 2.14 6.69 -2.39 -0.02 2.13 16 4 C 0.52 17.83 6.65 87.66 0.58 18.41 16 5 O -0.59 -26.20 15.41 -3.04 -0.05 -26.25 16 6 N -0.60 -18.32 2.86 -818.05 -2.34 -20.66 16 7 C 0.11 2.49 6.16 86.51 0.53 3.02 16 8 C -0.12 -3.54 5.95 30.82 0.18 -3.36 16 9 C -0.11 -3.50 4.43 30.62 0.14 -3.36 16 10 C 0.17 6.53 0.68 3.68 0.00 6.53 16 11 C 0.07 2.52 6.09 71.98 0.44 2.96 16 12 O -0.56 -21.15 9.91 -148.98 -1.48 -22.63 16 13 N -0.71 -36.31 4.22 -302.98 -1.28 -37.59 16 14 C -0.17 -9.69 8.14 84.04 0.68 -9.00 16 15 H 0.09 5.16 5.29 -2.91 -0.02 5.14 16 16 C -0.10 -5.92 5.50 84.86 0.47 -5.46 16 17 N -0.97 -65.05 13.06 21.66 0.28 -64.76 16 18 Si 0.95 50.71 29.55 68.60 2.03 52.73 16 19 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 20 H -0.31 -17.11 7.11 99.48 0.71 -16.40 16 21 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 22 C 0.12 3.87 5.15 86.36 0.44 4.32 16 23 C -0.24 -7.16 4.42 -20.14 -0.09 -7.25 16 24 C 0.05 2.14 11.62 85.23 0.99 3.13 16 25 N -0.34 -13.87 12.58 -57.03 -0.72 -14.58 16 26 N -0.38 -11.12 4.01 -369.56 -1.48 -12.60 16 27 C 0.09 1.84 11.47 127.77 1.47 3.31 16 28 C 0.08 1.85 10.47 83.54 0.88 2.72 16 29 H 0.04 1.11 7.68 -2.39 -0.02 1.09 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.77 4.50 -2.39 -0.01 1.76 16 34 H 0.03 1.24 7.53 -2.39 -0.02 1.22 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.58 6.98 -2.39 -0.02 1.56 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.37 10.19 9.12 -74.06 -0.68 9.52 16 41 H 0.36 21.66 7.65 -92.71 -0.71 20.95 16 42 H 0.23 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.06 2.32 7.00 -2.38 -0.02 2.30 16 44 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.15 6.60 8.06 -2.91 -0.02 6.57 16 46 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.23 2.52 8.00 -2.91 -0.02 2.49 16 Total: -1.00 -91.94 386.95 1.87 -90.06 By element: Atomic # 1 Polarization: 43.49 SS G_CDS: -0.41 Total: 43.08 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 7.31 Total: 13.21 kcal Atomic # 7 Polarization: -144.67 SS G_CDS: -5.54 Total: -150.21 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -1.52 Total: -48.88 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.03 Total: 52.73 kcal Total: -91.94 1.87 -90.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273938016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.777 kcal (2) G-P(sol) polarization free energy of solvation -91.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds