Wall clock time and date at job start Tue Mar 31 2020 19:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47534 * 2 1 4 4 C 1.50704 * 109.47248 * 240.00308 * 2 1 3 5 5 O 1.21288 * 119.99703 * 335.04531 * 4 2 1 6 6 N 1.34774 * 120.00286 * 155.04677 * 4 2 1 7 7 C 1.46927 * 120.62804 * 4.89634 * 6 4 2 8 8 C 1.52765 * 109.00625 * 233.58321 * 7 6 4 9 9 C 1.53039 * 109.38483 * 305.58875 * 8 7 6 10 10 C 1.53039 * 109.53629 * 61.23677 * 9 8 7 11 11 C 1.53006 * 109.49831 * 178.68563 * 10 9 8 12 12 O 1.42903 * 109.47018 * 299.84353 * 11 10 9 13 13 N 1.46499 * 109.52535 * 58.60814 * 10 9 8 14 14 C 1.36935 * 120.00115 * 60.13704 * 13 10 9 15 15 H 1.08006 * 119.99725 * 0.02562 * 14 13 10 16 16 C 1.38813 * 120.00326 * 180.02562 * 14 13 10 17 17 N 1.31613 * 120.00128 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99751 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46621 * 89.99886 * 18 16 14 20 20 H 1.48491 * 109.47105 * 209.99714 * 18 16 14 21 21 H 1.48499 * 109.47094 * 330.00313 * 18 16 14 22 22 C 1.46922 * 120.63044 * 185.17402 * 6 4 2 23 23 C 1.50697 * 109.47124 * 120.00229 * 2 1 3 24 24 C 1.39879 * 126.03919 * 59.99820 * 23 2 1 25 25 N 1.30832 * 108.19844 * 179.97438 * 24 23 2 26 26 N 1.40085 * 108.21149 * 0.02562 * 25 24 23 27 27 C 1.46502 * 126.03637 * 180.02562 * 26 25 24 28 28 C 1.34948 * 107.92258 * 359.97438 * 26 25 24 29 29 H 1.09001 * 109.47482 * 175.02263 * 1 2 3 30 30 H 1.08998 * 109.47223 * 295.02628 * 1 2 3 31 31 H 1.09008 * 109.46739 * 55.02167 * 1 2 3 32 32 H 1.08998 * 109.58988 * 353.41458 * 7 6 4 33 33 H 1.08996 * 109.58907 * 113.84275 * 7 6 4 34 34 H 1.09002 * 109.56663 * 185.55450 * 8 7 6 35 35 H 1.09001 * 109.38465 * 65.51633 * 8 7 6 36 36 H 1.09008 * 109.46013 * 301.22305 * 9 8 7 37 37 H 1.08994 * 109.46469 * 181.26407 * 9 8 7 38 38 H 1.08998 * 109.47057 * 59.83467 * 11 10 9 39 39 H 1.08999 * 109.47237 * 179.84295 * 11 10 9 40 40 H 0.96698 * 114.00133 * 180.02562 * 12 11 10 41 41 H 0.97001 * 120.00011 * 240.14753 * 13 10 9 42 42 H 0.97009 * 119.99901 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.58682 * 246.15584 * 22 6 4 44 44 H 1.08993 * 109.58707 * 6.58084 * 22 6 4 45 45 H 1.07994 * 125.89438 * 0.02562 * 24 23 2 46 46 H 1.09004 * 109.46810 * 269.97579 * 27 26 25 47 47 H 1.08995 * 109.47438 * 29.97605 * 27 26 25 48 48 H 1.09002 * 109.46838 * 149.97453 * 27 26 25 49 49 H 1.08003 * 126.12008 * 179.73640 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3366 -1.5387 -1.7790 6 7 3.2547 -0.4252 -1.7215 7 6 4.1512 0.4955 -1.0093 8 6 4.6019 1.5940 -1.9706 9 6 5.2173 0.9562 -3.2182 10 6 4.1670 0.0954 -3.9239 11 6 4.7735 -0.5156 -5.1888 12 8 5.1963 0.5294 -6.0670 13 7 3.0158 0.9261 -4.2858 14 6 3.1801 1.9959 -5.1246 15 1 4.1584 2.2269 -5.5198 16 6 2.0895 2.7833 -5.4671 17 7 2.2473 3.8112 -6.2738 18 14 0.3977 2.3840 -4.7830 19 1 0.2001 3.1046 -3.4997 20 1 -0.6419 2.8089 -5.7544 21 1 0.2902 0.9212 -4.5509 22 6 3.7135 -1.0245 -2.9820 23 6 2.0323 -0.7104 1.2304 24 6 1.7734 -2.0410 1.5758 25 7 2.3779 -2.2942 2.7081 26 7 3.0411 -1.1311 3.1200 27 6 3.8414 -0.9807 4.3379 28 6 2.8136 -0.1741 2.1962 29 1 -0.3634 -1.0238 -0.0892 30 1 -0.3633 0.4347 0.9312 31 1 -0.3633 0.5892 -0.8421 32 1 3.6223 0.9428 -0.1678 33 1 5.0229 -0.0499 -0.6476 34 1 5.3436 2.2254 -1.4814 35 1 3.7418 2.1988 -2.2577 36 1 6.0626 0.3322 -2.9278 37 1 5.5597 1.7389 -3.8950 38 1 5.6307 -1.1326 -4.9193 39 1 4.0260 -1.1308 -5.6896 40 1 5.5913 0.2145 -6.8915 41 1 2.1372 0.7184 -3.9310 42 1 1.4851 4.3613 -6.5134 43 1 4.5488 -1.6964 -2.7844 44 1 2.8959 -1.5798 -3.4415 45 1 1.1780 -2.7387 1.0058 46 1 3.2010 -0.6469 5.1544 47 1 4.2915 -1.9388 4.5976 48 1 4.6269 -0.2444 4.1678 49 1 3.1847 0.8398 2.2252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273938018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:20 Heat of formation + Delta-G solvation = 22.802808 kcal Electronic energy + Delta-G solvation = -31411.820980 eV Core-core repulsion = 27376.763234 eV Total energy + Delta-G solvation = -4035.057747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54197 -40.04412 -38.02826 -35.76152 -34.55320 -33.82785 -32.72478 -31.90916 -31.38386 -29.58430 -29.31557 -26.74458 -25.85798 -25.40661 -23.56699 -23.00749 -21.84310 -21.28477 -20.80149 -18.89413 -18.27952 -17.73750 -17.31577 -16.62295 -16.39133 -15.74138 -15.38811 -15.25880 -14.81879 -14.49176 -14.16675 -14.06963 -13.86181 -13.65815 -13.49438 -13.18500 -13.06072 -12.91310 -12.72503 -12.64927 -12.34401 -12.24166 -12.17021 -11.87350 -11.65280 -11.50185 -11.19816 -10.86314 -10.77136 -10.62374 -10.40562 -10.35823 -10.14702 -9.95334 -9.64616 -9.56658 -9.43458 -8.94071 -8.76655 -8.50521 -8.28797 -7.13974 -5.57828 -2.92278 1.66526 2.29060 2.57118 2.92313 3.24854 3.45771 3.54129 3.56431 4.26971 4.57223 4.69662 4.72513 4.80375 4.89103 4.91084 4.99165 5.04480 5.06176 5.15827 5.19940 5.37095 5.40908 5.48451 5.54426 5.60904 5.70738 5.72810 5.78011 5.84057 5.87987 5.95630 6.00333 6.03845 6.07648 6.10672 6.29902 6.34764 6.36936 6.46388 6.67546 6.75873 6.79908 6.92720 7.06462 7.49845 7.67242 8.27584 8.39121 8.44716 8.64739 9.42503 10.11231 10.28596 11.60491 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004081 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.892311 B = 6858.681172 C = 7670.533865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 H 0.097 0.903 4 C 0.526 3.474 5 O -0.543 6.543 6 N -0.597 5.597 7 C 0.112 3.888 8 C -0.131 4.131 9 C -0.115 4.115 10 C 0.195 3.805 11 C 0.076 3.924 12 O -0.533 6.533 13 N -0.731 5.731 14 C -0.212 4.212 15 H 0.116 0.884 16 C -0.001 4.001 17 N -0.939 5.939 18 Si 0.864 3.136 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.277 1.277 22 C 0.112 3.888 23 C -0.222 4.222 24 C 0.066 3.934 25 N -0.298 5.298 26 N -0.378 5.378 27 C 0.103 3.897 28 C 0.062 3.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.037 0.963 40 H 0.355 0.645 41 H 0.360 0.640 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.183 0.817 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -8.791 19.206 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.054 4.054 3 H 0.115 0.885 4 C 0.314 3.686 5 O -0.420 6.420 6 N -0.329 5.329 7 C -0.011 4.011 8 C -0.169 4.169 9 C -0.154 4.154 10 C 0.103 3.897 11 C -0.005 4.005 12 O -0.336 6.336 13 N -0.374 5.374 14 C -0.342 4.342 15 H 0.133 0.867 16 C -0.195 4.195 17 N -0.589 5.589 18 Si 0.696 3.304 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.204 1.204 22 C -0.011 4.011 23 C -0.234 4.234 24 C -0.120 4.120 25 N -0.119 5.119 26 N -0.160 5.160 27 C -0.039 4.039 28 C -0.085 4.085 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.199 0.801 41 H 0.193 0.807 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.200 0.800 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.166 -9.553 20.317 23.282 hybrid contribution -1.166 0.168 -0.682 1.361 sum 4.999 -9.385 19.635 22.330 Atomic orbital electron populations 1.21639 0.92078 1.03389 1.01782 1.19585 0.97608 0.98987 0.89246 0.88457 1.20462 0.80541 0.82451 0.85134 1.90662 1.56129 1.34112 1.61102 1.47870 1.15562 1.46093 1.23381 1.21704 0.93181 0.91198 0.94987 1.21769 1.02085 0.97271 0.95799 1.21810 0.96703 1.00180 0.96735 1.19905 0.89059 0.90195 0.90583 1.22609 0.95821 0.89672 0.92438 1.86898 1.82194 1.32701 1.31780 1.42802 1.04282 1.33118 1.57149 1.19424 0.97257 1.00215 1.17267 0.86657 1.24618 0.96522 0.98131 1.00261 1.69681 1.29527 1.19702 1.39953 0.86828 0.87154 0.77923 0.78524 1.21496 1.22075 1.20354 1.21724 1.00240 0.95106 0.83992 1.19620 1.08659 0.95608 0.99558 1.23804 0.98626 0.96004 0.93565 1.77382 1.13542 1.05812 1.15187 1.48430 1.40239 1.08313 1.19023 1.21842 0.94350 1.04091 0.83568 1.22310 0.99896 0.95677 0.90579 0.91270 0.92040 0.92080 0.90438 0.92163 0.91932 0.89609 0.93872 0.90095 0.95673 0.94480 0.80059 0.80705 0.93543 0.91475 0.88972 0.80005 0.90823 0.89362 0.89422 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.68 37.15 0.32 -1.41 16 2 C -0.03 -0.42 2.24 -92.93 -0.21 -0.63 16 3 H 0.10 1.16 6.45 -51.93 -0.33 0.82 16 4 C 0.53 8.67 6.65 -10.98 -0.07 8.60 16 5 O -0.54 -10.65 15.42 5.55 0.09 -10.57 16 6 N -0.60 -9.28 2.87 -173.03 -0.50 -9.77 16 7 C 0.11 1.43 6.19 -3.93 -0.02 1.40 16 8 C -0.13 -1.98 5.91 -26.83 -0.16 -2.14 16 9 C -0.11 -1.93 4.39 -26.69 -0.12 -2.05 16 10 C 0.20 3.59 0.68 -131.70 -0.09 3.50 16 11 C 0.08 1.31 6.08 37.16 0.23 1.54 16 12 O -0.53 -10.28 9.96 -35.23 -0.35 -10.63 16 13 N -0.73 -16.92 4.03 -47.12 -0.19 -17.11 16 14 C -0.21 -5.80 8.77 -15.06 -0.13 -5.94 16 15 H 0.12 3.41 5.53 -52.48 -0.29 3.12 16 16 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 17 N -0.94 -29.78 13.97 55.49 0.78 -29.00 16 18 Si 0.86 22.82 27.74 -169.99 -4.71 18.10 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 21 H -0.28 -7.25 6.52 56.52 0.37 -6.89 16 22 C 0.11 1.84 5.13 -3.71 -0.02 1.82 16 23 C -0.22 -2.60 4.50 -105.05 -0.47 -3.07 16 24 C 0.07 0.84 11.63 -17.36 -0.20 0.64 16 25 N -0.30 -3.80 12.57 30.62 0.39 -3.41 16 26 N -0.38 -3.72 4.01 -68.16 -0.27 -3.99 16 27 C 0.10 0.55 11.47 59.85 0.69 1.24 16 28 C 0.06 0.58 10.83 -17.22 -0.19 0.39 16 29 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.08 0.83 4.82 -51.93 -0.25 0.58 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.61 7.53 -51.93 -0.39 1.22 16 36 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.08 1.62 6.84 -51.93 -0.36 1.26 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.35 5.17 9.12 45.56 0.42 5.59 16 41 H 0.36 8.77 5.51 -40.82 -0.22 8.55 16 42 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.69 7.04 -51.93 -0.37 1.32 16 45 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -37.02 384.48 -6.39 -43.41 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.86 Total: 13.42 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.54 Total: 3.76 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.20 Total: -63.29 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.27 Total: -21.20 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.02 -6.39 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273938018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.217 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds