Wall clock time and date at job start Tue Mar 31 2020 19:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47534 * 2 1 4 4 C 1.50704 * 109.47248 * 240.00308 * 2 1 3 5 5 O 1.21288 * 119.99703 * 335.04531 * 4 2 1 6 6 N 1.34774 * 120.00286 * 155.04677 * 4 2 1 7 7 C 1.46927 * 120.62804 * 4.89634 * 6 4 2 8 8 C 1.52765 * 109.00625 * 233.58321 * 7 6 4 9 9 C 1.53039 * 109.38483 * 305.58875 * 8 7 6 10 10 C 1.53039 * 109.53629 * 61.23677 * 9 8 7 11 11 C 1.53006 * 109.49831 * 178.68563 * 10 9 8 12 12 O 1.42903 * 109.47018 * 299.84353 * 11 10 9 13 13 N 1.46499 * 109.52535 * 58.60814 * 10 9 8 14 14 C 1.36935 * 120.00115 * 60.13704 * 13 10 9 15 15 H 1.08006 * 119.99725 * 0.02562 * 14 13 10 16 16 C 1.38813 * 120.00326 * 180.02562 * 14 13 10 17 17 N 1.31613 * 120.00128 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99751 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46621 * 89.99886 * 18 16 14 20 20 H 1.48491 * 109.47105 * 209.99714 * 18 16 14 21 21 H 1.48499 * 109.47094 * 330.00313 * 18 16 14 22 22 C 1.46922 * 120.63044 * 185.17402 * 6 4 2 23 23 C 1.50697 * 109.47124 * 120.00229 * 2 1 3 24 24 C 1.39879 * 126.03919 * 59.99820 * 23 2 1 25 25 N 1.30832 * 108.19844 * 179.97438 * 24 23 2 26 26 N 1.40085 * 108.21149 * 0.02562 * 25 24 23 27 27 C 1.46502 * 126.03637 * 180.02562 * 26 25 24 28 28 C 1.34948 * 107.92258 * 359.97438 * 26 25 24 29 29 H 1.09001 * 109.47482 * 175.02263 * 1 2 3 30 30 H 1.08998 * 109.47223 * 295.02628 * 1 2 3 31 31 H 1.09008 * 109.46739 * 55.02167 * 1 2 3 32 32 H 1.08998 * 109.58988 * 353.41458 * 7 6 4 33 33 H 1.08996 * 109.58907 * 113.84275 * 7 6 4 34 34 H 1.09002 * 109.56663 * 185.55450 * 8 7 6 35 35 H 1.09001 * 109.38465 * 65.51633 * 8 7 6 36 36 H 1.09008 * 109.46013 * 301.22305 * 9 8 7 37 37 H 1.08994 * 109.46469 * 181.26407 * 9 8 7 38 38 H 1.08998 * 109.47057 * 59.83467 * 11 10 9 39 39 H 1.08999 * 109.47237 * 179.84295 * 11 10 9 40 40 H 0.96698 * 114.00133 * 180.02562 * 12 11 10 41 41 H 0.97001 * 120.00011 * 240.14753 * 13 10 9 42 42 H 0.97009 * 119.99901 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.58682 * 246.15584 * 22 6 4 44 44 H 1.08993 * 109.58707 * 6.58084 * 22 6 4 45 45 H 1.07994 * 125.89438 * 0.02562 * 24 23 2 46 46 H 1.09004 * 109.46810 * 269.97579 * 27 26 25 47 47 H 1.08995 * 109.47438 * 29.97605 * 27 26 25 48 48 H 1.09002 * 109.46838 * 149.97453 * 27 26 25 49 49 H 1.08003 * 126.12008 * 179.73640 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3366 -1.5387 -1.7790 6 7 3.2547 -0.4252 -1.7215 7 6 4.1512 0.4955 -1.0093 8 6 4.6019 1.5940 -1.9706 9 6 5.2173 0.9562 -3.2182 10 6 4.1670 0.0954 -3.9239 11 6 4.7735 -0.5156 -5.1888 12 8 5.1963 0.5294 -6.0670 13 7 3.0158 0.9261 -4.2858 14 6 3.1801 1.9959 -5.1246 15 1 4.1584 2.2269 -5.5198 16 6 2.0895 2.7833 -5.4671 17 7 2.2473 3.8112 -6.2738 18 14 0.3977 2.3840 -4.7830 19 1 0.2001 3.1046 -3.4997 20 1 -0.6419 2.8089 -5.7544 21 1 0.2902 0.9212 -4.5509 22 6 3.7135 -1.0245 -2.9820 23 6 2.0323 -0.7104 1.2304 24 6 1.7734 -2.0410 1.5758 25 7 2.3779 -2.2942 2.7081 26 7 3.0411 -1.1311 3.1200 27 6 3.8414 -0.9807 4.3379 28 6 2.8136 -0.1741 2.1962 29 1 -0.3634 -1.0238 -0.0892 30 1 -0.3633 0.4347 0.9312 31 1 -0.3633 0.5892 -0.8421 32 1 3.6223 0.9428 -0.1678 33 1 5.0229 -0.0499 -0.6476 34 1 5.3436 2.2254 -1.4814 35 1 3.7418 2.1988 -2.2577 36 1 6.0626 0.3322 -2.9278 37 1 5.5597 1.7389 -3.8950 38 1 5.6307 -1.1326 -4.9193 39 1 4.0260 -1.1308 -5.6896 40 1 5.5913 0.2145 -6.8915 41 1 2.1372 0.7184 -3.9310 42 1 1.4851 4.3613 -6.5134 43 1 4.5488 -1.6964 -2.7844 44 1 2.8959 -1.5798 -3.4415 45 1 1.1780 -2.7387 1.0058 46 1 3.2010 -0.6469 5.1544 47 1 4.2915 -1.9388 4.5976 48 1 4.6269 -0.2444 4.1678 49 1 3.1847 0.8398 2.2252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273938018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:19 Heat of formation + Delta-G solvation = -5.856338 kcal Electronic energy + Delta-G solvation = -31413.063734 eV Core-core repulsion = 27376.763234 eV Total energy + Delta-G solvation = -4036.300500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37819 -41.25845 -39.42314 -37.13969 -35.71991 -35.31809 -33.80670 -33.37733 -32.78101 -31.13633 -30.36249 -27.45057 -27.06726 -26.63713 -25.32773 -24.38219 -23.08442 -22.05708 -21.72988 -20.18886 -19.78537 -19.48536 -18.35037 -17.96314 -17.55959 -16.77497 -16.57731 -16.34748 -16.21187 -15.93134 -15.49523 -15.25609 -15.03219 -14.87268 -14.83173 -14.57550 -14.26647 -13.93063 -13.84954 -13.65319 -13.56955 -13.42432 -13.33906 -13.06472 -12.95740 -12.76158 -12.61683 -12.51866 -12.45231 -12.08419 -11.75955 -11.70593 -11.51597 -11.47307 -11.32478 -10.88568 -10.72315 -10.54978 -10.35772 -9.54266 -9.32860 -9.16712 -7.84618 -5.13922 0.93043 1.32387 1.37953 1.41804 1.56732 1.70262 1.79225 2.12594 2.55317 3.38175 3.48034 3.55071 3.64586 3.73375 3.89547 3.99227 4.10943 4.14857 4.22338 4.28379 4.33390 4.38164 4.40079 4.50524 4.52420 4.57580 4.63705 4.66924 4.76284 4.76411 4.80332 4.82324 4.91524 4.96994 5.01513 5.02302 5.09347 5.28609 5.32564 5.57837 5.59156 5.60533 5.69548 6.12501 6.14643 6.44903 6.49485 6.70380 7.10314 7.22384 7.30232 8.00292 8.16118 9.37523 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004081 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.892311 B = 6858.681172 C = 7670.533865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.022 4.022 3 H 0.115 0.885 4 C 0.517 3.483 5 O -0.586 6.586 6 N -0.600 5.600 7 C 0.115 3.885 8 C -0.127 4.127 9 C -0.109 4.109 10 C 0.183 3.817 11 C 0.074 3.926 12 O -0.565 6.565 13 N -0.735 5.735 14 C -0.167 4.167 15 H 0.094 0.906 16 C -0.071 4.071 17 N -0.989 5.989 18 Si 0.923 3.077 19 H -0.279 1.279 20 H -0.306 1.306 21 H -0.279 1.279 22 C 0.118 3.882 23 C -0.241 4.241 24 C 0.050 3.950 25 N -0.330 5.330 26 N -0.374 5.374 27 C 0.092 3.908 28 C 0.083 3.917 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.375 0.625 41 H 0.353 0.647 42 H 0.248 0.752 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.170 0.830 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.563 -9.217 22.610 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.045 4.045 3 H 0.133 0.867 4 C 0.306 3.694 5 O -0.466 6.466 6 N -0.331 5.331 7 C -0.007 4.007 8 C -0.166 4.166 9 C -0.148 4.148 10 C 0.092 3.908 11 C -0.007 4.007 12 O -0.370 6.370 13 N -0.377 5.377 14 C -0.298 4.298 15 H 0.111 0.889 16 C -0.260 4.260 17 N -0.644 5.644 18 Si 0.754 3.246 19 H -0.206 1.206 20 H -0.233 1.233 21 H -0.205 1.205 22 C -0.006 4.006 23 C -0.253 4.253 24 C -0.135 4.135 25 N -0.152 5.152 26 N -0.155 5.155 27 C -0.047 4.047 28 C -0.065 4.065 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.222 0.778 41 H 0.185 0.815 42 H 0.057 0.943 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.187 0.813 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.138 0.862 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.424 -10.035 23.777 27.148 hybrid contribution -1.666 0.205 -1.687 2.380 sum 6.758 -9.830 22.090 25.106 Atomic orbital electron populations 1.21630 0.92739 1.02344 1.02074 1.19506 0.97105 0.99455 0.88390 0.86710 1.21161 0.80354 0.82064 0.85823 1.90638 1.57287 1.36098 1.62569 1.48039 1.15816 1.46238 1.23013 1.21903 0.93992 0.90217 0.94561 1.21722 1.01095 0.97915 0.95839 1.21707 0.97166 0.99303 0.96626 1.20337 0.87973 0.90600 0.91876 1.22613 0.97193 0.89310 0.91544 1.86811 1.82611 1.34368 1.33248 1.42869 1.05655 1.32724 1.56442 1.19358 0.95767 0.99689 1.14981 0.88867 1.25153 0.99649 0.99050 1.02148 1.69828 1.29942 1.21660 1.42939 0.85872 0.83487 0.77388 0.77829 1.20592 1.23312 1.20493 1.21629 1.00475 0.94442 0.84051 1.19466 1.10603 0.95259 0.99930 1.23748 0.99103 0.96701 0.93925 1.77328 1.14674 1.07775 1.15427 1.48806 1.39394 1.07454 1.19876 1.22242 0.94949 1.05199 0.82341 1.22849 0.97834 0.96823 0.88992 0.92656 0.89692 0.94084 0.87942 0.89069 0.89038 0.93810 0.90260 0.93793 0.91356 0.95552 0.77808 0.81517 0.94289 0.88018 0.91483 0.81307 0.89489 0.89414 0.86179 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.68 71.98 0.63 -2.73 16 2 C -0.02 -0.54 2.24 -12.29 -0.03 -0.57 16 3 H 0.12 2.33 6.45 -2.39 -0.02 2.32 16 4 C 0.52 16.43 6.65 87.66 0.58 17.01 16 5 O -0.59 -23.31 15.42 -3.05 -0.05 -23.36 16 6 N -0.60 -17.16 2.87 -819.74 -2.36 -19.52 16 7 C 0.11 2.41 6.19 86.22 0.53 2.95 16 8 C -0.13 -3.45 5.91 30.53 0.18 -3.27 16 9 C -0.11 -3.38 4.39 30.62 0.13 -3.25 16 10 C 0.18 6.42 0.68 3.68 0.00 6.42 16 11 C 0.07 2.43 6.08 71.98 0.44 2.87 16 12 O -0.56 -21.49 9.96 -148.98 -1.48 -22.97 16 13 N -0.74 -34.01 4.03 -302.98 -1.22 -35.23 16 14 C -0.17 -9.29 8.77 84.03 0.74 -8.55 16 15 H 0.09 5.66 5.53 -2.91 -0.02 5.64 16 16 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 17 N -0.99 -64.92 13.97 21.65 0.30 -64.62 16 18 Si 0.92 48.86 27.74 68.60 1.90 50.76 16 19 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.31 -16.61 7.11 99.48 0.71 -15.91 16 21 H -0.28 -14.57 6.52 99.48 0.65 -13.92 16 22 C 0.12 3.60 5.13 86.36 0.44 4.04 16 23 C -0.24 -4.98 4.50 -20.14 -0.09 -5.07 16 24 C 0.05 1.24 11.63 85.24 0.99 2.23 16 25 N -0.33 -7.83 12.57 -57.02 -0.72 -8.55 16 26 N -0.37 -5.95 4.01 -369.56 -1.48 -7.43 16 27 C 0.09 0.59 11.47 127.77 1.47 2.06 16 28 C 0.08 1.17 10.83 83.54 0.90 2.08 16 29 H 0.05 1.55 7.68 -2.39 -0.02 1.53 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.10 1.66 4.82 -2.39 -0.01 1.65 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.57 7.53 -2.39 -0.02 1.55 16 36 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.04 1.70 6.84 -2.39 -0.02 1.69 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.37 10.67 9.12 -74.06 -0.68 10.00 16 41 H 0.35 17.27 5.51 -92.71 -0.51 16.75 16 42 H 0.25 15.81 8.31 -92.70 -0.77 15.04 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.07 2.42 7.04 -2.39 -0.02 2.41 16 45 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 46 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.12 0.02 8.14 -2.39 -0.02 0.01 16 49 H 0.22 1.14 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -85.75 384.48 2.02 -83.73 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.27 Total: 34.78 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 7.39 Total: 12.40 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -5.47 Total: -135.35 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.53 Total: -46.33 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.90 Total: 50.76 kcal Total: -85.75 2.02 -83.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273938018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.876 kcal (2) G-P(sol) polarization free energy of solvation -85.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds