Wall clock time and date at job start Tue Mar 31 2020 19:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46994 * 2 1 4 4 C 1.53002 * 109.47306 * 239.99286 * 2 1 3 5 5 C 1.50694 * 109.46730 * 65.00059 * 4 2 1 6 6 C 1.34670 * 126.59428 * 85.02464 * 5 4 2 7 7 N 1.34126 * 108.02416 * 179.97438 * 6 5 4 8 8 C 1.30501 * 109.25631 * 0.02562 * 7 6 5 9 9 N 1.35039 * 108.69877 * 359.97438 * 8 7 6 10 10 H 0.97007 * 126.39828 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46828 * 119.99385 * 2 1 3 12 12 O 1.21278 * 119.99457 * 120.00253 * 11 2 1 13 13 N 1.34775 * 120.00116 * 300.00227 * 11 2 1 14 14 C 1.46500 * 119.99973 * 174.69466 * 13 11 2 15 15 C 1.52996 * 109.54203 * 304.13249 * 14 13 11 16 16 N 1.46496 * 109.47235 * 305.57948 * 15 14 13 17 17 C 1.36938 * 119.99791 * 175.02353 * 16 15 14 18 18 H 1.07997 * 120.00374 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99563 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00169 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99642 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47548 * 90.00229 * 21 19 17 23 23 H 1.48504 * 109.46932 * 210.00066 * 21 19 17 24 24 H 1.48500 * 109.47413 * 329.99540 * 21 19 17 25 25 C 1.53181 * 109.54190 * 183.95249 * 14 13 11 26 26 C 1.53283 * 109.06533 * 297.03308 * 25 14 13 27 27 O 1.42900 * 109.45731 * 302.44203 * 26 25 14 28 28 C 1.42910 * 114.09928 * 61.16194 * 27 26 25 29 29 C 1.53088 * 109.41350 * 298.84174 * 28 27 26 30 30 H 1.09001 * 109.47715 * 300.00567 * 1 2 3 31 31 H 1.09004 * 109.47355 * 60.00941 * 1 2 3 32 32 H 1.09005 * 109.47106 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47027 * 305.00297 * 4 2 1 34 34 H 1.08996 * 109.46963 * 185.00002 * 4 2 1 35 35 H 1.07998 * 125.98369 * 0.23092 * 6 5 4 36 36 H 1.07997 * 125.64725 * 180.02562 * 8 7 6 37 37 H 0.97007 * 119.99927 * 354.69127 * 13 11 2 38 38 H 1.08998 * 109.47068 * 65.58324 * 15 14 13 39 39 H 1.09002 * 109.46574 * 185.57662 * 15 14 13 40 40 H 0.96999 * 120.00004 * 355.02567 * 16 15 14 41 41 H 0.96999 * 120.00092 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.51719 * 57.02243 * 25 14 13 43 43 H 1.08999 * 109.52068 * 177.20713 * 25 14 13 44 44 H 1.09003 * 109.45463 * 182.44764 * 26 25 14 45 45 H 1.08995 * 109.46842 * 62.44747 * 26 25 14 46 46 H 1.08998 * 109.47942 * 178.85384 * 28 27 26 47 47 H 1.08996 * 109.48618 * 58.82749 * 28 27 26 48 48 H 1.09004 * 109.52123 * 297.69899 * 29 28 27 49 49 H 1.09001 * 109.57416 * 177.54419 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0568 -2.4765 6 6 2.3074 1.0923 -3.0220 7 7 1.6243 1.5032 -4.1006 8 6 0.5599 0.7620 -4.2440 9 7 0.5327 -0.1532 -3.2514 10 1 -0.1458 -0.8326 -3.1133 11 6 2.0323 -0.7103 1.2306 12 8 2.7295 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4547 14 6 2.0963 -1.0040 3.6486 15 6 1.5542 -2.4314 3.5518 16 7 0.1081 -2.3900 3.3211 17 6 -0.5831 -3.5509 3.0981 18 1 -0.0623 -4.4970 3.0928 19 6 -1.9533 -3.5116 2.8789 20 7 -2.5880 -2.3586 2.8849 21 14 -2.8964 -5.0953 2.5755 22 1 -3.3702 -5.6453 3.8709 23 1 -4.0629 -4.8166 1.6998 24 1 -2.0059 -6.0828 1.9144 25 6 1.5239 -0.3219 4.8950 26 6 2.1342 1.0783 5.0244 27 8 3.5579 0.9730 5.0874 28 6 4.1514 0.3847 3.9280 29 6 3.6239 -1.0420 3.7547 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2054 35 1 3.2320 1.5149 -2.6574 36 1 -0.1767 0.8631 -5.0274 37 1 1.2143 0.5812 2.5451 38 1 2.0395 -2.9490 2.7244 39 1 1.7588 -2.9616 4.4820 40 1 -0.3597 -1.5403 3.3262 41 1 -3.5454 -2.3311 2.7322 42 1 0.4408 -0.2422 4.8016 43 1 1.7719 -0.9101 5.7785 44 1 1.7642 1.5530 5.9332 45 1 1.8520 1.6789 4.1598 46 1 5.2345 0.3599 4.0470 47 1 3.8957 0.9760 3.0489 48 1 3.9143 -1.6448 4.6152 49 1 4.0413 -1.4779 2.8471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274001966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:39 Heat of formation + Delta-G solvation = -20.508526 kcal Electronic energy + Delta-G solvation = -31014.900942 eV Core-core repulsion = 26977.965075 eV Total energy + Delta-G solvation = -4036.935867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10261 -40.54909 -38.56698 -35.95363 -34.74999 -33.69472 -32.43575 -31.67793 -31.05762 -30.45679 -29.69415 -26.56956 -26.31805 -23.94720 -23.73827 -23.18737 -21.58809 -21.50199 -20.94129 -19.96868 -18.96685 -17.86780 -17.26752 -17.00969 -16.01572 -15.90218 -15.52956 -15.18977 -15.09737 -14.63958 -14.42254 -14.28481 -14.12367 -13.75780 -13.52116 -13.32234 -13.24081 -12.95749 -12.74462 -12.45282 -12.37770 -12.22574 -11.99958 -11.80266 -11.54717 -11.19831 -11.18979 -11.00304 -10.95506 -10.87142 -10.51213 -10.32689 -10.11377 -10.04149 -10.02530 -9.74765 -9.51615 -9.23209 -8.83483 -8.56633 -8.37822 -6.91025 -5.80743 -3.06543 1.99165 2.99100 3.09633 3.11244 3.38584 3.44942 3.46018 3.51348 3.94497 4.55093 4.58551 4.72425 4.84607 4.88710 4.99022 5.01218 5.07453 5.13736 5.17257 5.26860 5.35091 5.42984 5.46608 5.52947 5.55269 5.68573 5.73846 5.75378 5.90043 5.92259 5.93024 6.04330 6.08166 6.14459 6.23010 6.28539 6.29903 6.44733 6.47714 6.53304 6.68938 6.85193 7.04870 7.25021 7.31311 7.68567 7.86302 7.99991 8.38753 8.61160 9.50671 10.08175 10.44617 11.42096 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007322 B = 0.004988 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.291240 B = 5612.370646 C = 8597.453347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.026 4.026 5 C -0.007 4.007 6 C -0.031 4.031 7 N -0.496 5.496 8 C 0.176 3.824 9 N -0.564 5.564 10 H 0.421 0.579 11 C 0.532 3.468 12 O -0.534 6.534 13 N -0.712 5.712 14 C 0.175 3.825 15 C 0.142 3.858 16 N -0.723 5.723 17 C -0.228 4.228 18 H 0.067 0.933 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.902 3.098 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.283 1.283 25 C -0.155 4.155 26 C 0.061 3.939 27 O -0.386 6.386 28 C 0.066 3.934 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.167 0.833 36 H 0.205 0.795 37 H 0.394 0.606 38 H 0.050 0.950 39 H 0.019 0.981 40 H 0.381 0.619 41 H 0.253 0.747 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.796 9.277 -5.262 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.111 0.889 4 C -0.065 4.065 5 C -0.123 4.123 6 C -0.179 4.179 7 N -0.215 5.215 8 C -0.108 4.108 9 N -0.167 5.167 10 H 0.259 0.741 11 C 0.318 3.682 12 O -0.411 6.411 13 N -0.364 5.364 14 C 0.089 3.911 15 C 0.014 3.986 16 N -0.367 5.367 17 C -0.360 4.360 18 H 0.085 0.915 19 C -0.209 4.209 20 N -0.585 5.585 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.209 1.209 25 C -0.193 4.193 26 C -0.016 4.016 27 O -0.305 6.305 28 C -0.010 4.010 29 C -0.202 4.202 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.184 0.816 36 H 0.221 0.779 37 H 0.228 0.772 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.215 0.785 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.622 9.114 -5.735 14.441 hybrid contribution -2.013 -1.337 0.217 2.427 sum 7.609 7.776 -5.518 12.199 Atomic orbital electron populations 1.21736 0.92075 1.03845 1.02009 1.21282 0.98241 1.00305 0.92652 0.88949 1.19859 1.02308 0.97446 0.86912 1.21328 0.90774 1.02213 0.97970 1.22058 1.02148 0.97972 0.95702 1.70254 1.05656 1.26877 1.18758 1.24906 0.99940 0.90566 0.95349 1.43393 1.21288 1.28932 1.23123 0.74115 1.20236 0.79443 0.84266 0.84239 1.90622 1.37750 1.26047 1.86639 1.45916 1.58583 1.26435 1.05424 1.20558 0.93322 0.93440 0.83791 1.21070 0.86853 0.91801 0.98881 1.42185 1.01225 1.06944 1.86388 1.19220 0.90175 0.86928 1.39628 0.91479 1.24634 0.96459 0.96553 1.03299 1.69638 1.08326 1.23016 1.57528 0.86252 0.79592 0.83115 0.77651 1.21814 1.21947 1.20920 1.22474 1.02121 0.96702 0.98007 1.22627 0.81041 0.96117 1.01775 1.87898 1.19945 1.81834 1.40792 1.22507 0.97565 0.92985 0.87982 1.22552 0.95655 0.97748 1.04231 0.91721 0.92737 0.90989 0.90149 0.88767 0.81608 0.77862 0.77194 0.93224 0.96367 0.78474 0.93768 0.89250 0.89612 0.88866 0.93575 0.89329 0.93464 0.90550 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.91 37.16 0.33 -1.56 16 2 C -0.10 -1.28 2.71 -91.77 -0.25 -1.53 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.03 -0.32 4.59 -27.88 -0.13 -0.45 16 5 C -0.01 -0.08 5.57 -81.60 -0.45 -0.53 16 6 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 7 N -0.50 -6.52 11.25 -14.67 -0.17 -6.68 16 8 C 0.18 1.81 13.04 -90.38 -1.18 0.63 16 9 N -0.56 -5.67 5.78 -10.30 -0.06 -5.73 16 10 H 0.42 3.44 8.96 -40.82 -0.37 3.08 16 11 C 0.53 8.10 6.57 -10.98 -0.07 8.03 16 12 O -0.53 -9.73 12.23 5.56 0.07 -9.66 16 13 N -0.71 -10.10 3.61 -47.44 -0.17 -10.27 16 14 C 0.17 2.69 0.32 -131.64 -0.04 2.65 16 15 C 0.14 2.86 4.79 -4.05 -0.02 2.84 16 16 N -0.72 -17.16 5.21 -59.91 -0.31 -17.47 16 17 C -0.23 -6.20 9.99 -15.06 -0.15 -6.35 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.94 -26.63 13.06 55.49 0.72 -25.91 16 21 Si 0.90 22.02 29.55 -169.99 -5.02 16.99 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.15 -2.18 4.84 -26.49 -0.13 -2.31 16 26 C 0.06 0.72 6.67 37.30 0.25 0.97 16 27 O -0.39 -5.09 10.77 -35.23 -0.38 -5.47 16 28 C 0.07 0.81 6.68 37.20 0.25 1.05 16 29 C -0.16 -2.27 4.82 -26.59 -0.13 -2.40 16 30 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 31 H 0.05 0.67 7.07 -51.93 -0.37 0.30 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.14 7.95 -51.93 -0.41 0.72 16 35 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.39 4.89 6.99 -40.82 -0.29 4.60 16 38 H 0.05 1.12 6.25 -51.93 -0.32 0.79 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.38 9.23 6.51 -40.82 -0.27 8.96 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 1.39 7.22 -51.93 -0.37 1.02 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.49 7.01 -51.93 -0.36 0.13 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.55 7.75 -51.93 -0.40 0.15 16 48 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.09 1.44 6.26 -51.93 -0.33 1.12 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -32.95 386.64 -9.18 -42.13 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -7.66 Total: 16.28 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.03 Total: -0.04 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.02 Total: -66.07 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.31 Total: -15.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.95 -9.18 -42.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274001966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.621 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds