Wall clock time and date at job start Tue Mar 31 2020 19:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46994 * 2 1 4 4 C 1.53002 * 109.47306 * 239.99286 * 2 1 3 5 5 C 1.50694 * 109.46730 * 65.00059 * 4 2 1 6 6 C 1.34670 * 126.59428 * 85.02464 * 5 4 2 7 7 N 1.34126 * 108.02416 * 179.97438 * 6 5 4 8 8 C 1.30501 * 109.25631 * 0.02562 * 7 6 5 9 9 N 1.35039 * 108.69877 * 359.97438 * 8 7 6 10 10 H 0.97007 * 126.39828 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46828 * 119.99385 * 2 1 3 12 12 O 1.21278 * 119.99457 * 120.00253 * 11 2 1 13 13 N 1.34775 * 120.00116 * 300.00227 * 11 2 1 14 14 C 1.46500 * 119.99973 * 174.69466 * 13 11 2 15 15 C 1.52996 * 109.54203 * 304.13249 * 14 13 11 16 16 N 1.46496 * 109.47235 * 305.57948 * 15 14 13 17 17 C 1.36938 * 119.99791 * 175.02353 * 16 15 14 18 18 H 1.07997 * 120.00374 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99563 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00169 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99642 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47548 * 90.00229 * 21 19 17 23 23 H 1.48504 * 109.46932 * 210.00066 * 21 19 17 24 24 H 1.48500 * 109.47413 * 329.99540 * 21 19 17 25 25 C 1.53181 * 109.54190 * 183.95249 * 14 13 11 26 26 C 1.53283 * 109.06533 * 297.03308 * 25 14 13 27 27 O 1.42900 * 109.45731 * 302.44203 * 26 25 14 28 28 C 1.42910 * 114.09928 * 61.16194 * 27 26 25 29 29 C 1.53088 * 109.41350 * 298.84174 * 28 27 26 30 30 H 1.09001 * 109.47715 * 300.00567 * 1 2 3 31 31 H 1.09004 * 109.47355 * 60.00941 * 1 2 3 32 32 H 1.09005 * 109.47106 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47027 * 305.00297 * 4 2 1 34 34 H 1.08996 * 109.46963 * 185.00002 * 4 2 1 35 35 H 1.07998 * 125.98369 * 0.23092 * 6 5 4 36 36 H 1.07997 * 125.64725 * 180.02562 * 8 7 6 37 37 H 0.97007 * 119.99927 * 354.69127 * 13 11 2 38 38 H 1.08998 * 109.47068 * 65.58324 * 15 14 13 39 39 H 1.09002 * 109.46574 * 185.57662 * 15 14 13 40 40 H 0.96999 * 120.00004 * 355.02567 * 16 15 14 41 41 H 0.96999 * 120.00092 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.51719 * 57.02243 * 25 14 13 43 43 H 1.08999 * 109.52068 * 177.20713 * 25 14 13 44 44 H 1.09003 * 109.45463 * 182.44764 * 26 25 14 45 45 H 1.08995 * 109.46842 * 62.44747 * 26 25 14 46 46 H 1.08998 * 109.47942 * 178.85384 * 28 27 26 47 47 H 1.08996 * 109.48618 * 58.82749 * 28 27 26 48 48 H 1.09004 * 109.52123 * 297.69899 * 29 28 27 49 49 H 1.09001 * 109.57416 * 177.54419 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0568 -2.4765 6 6 2.3074 1.0923 -3.0220 7 7 1.6243 1.5032 -4.1006 8 6 0.5599 0.7620 -4.2440 9 7 0.5327 -0.1532 -3.2514 10 1 -0.1458 -0.8326 -3.1133 11 6 2.0323 -0.7103 1.2306 12 8 2.7295 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4547 14 6 2.0963 -1.0040 3.6486 15 6 1.5542 -2.4314 3.5518 16 7 0.1081 -2.3900 3.3211 17 6 -0.5831 -3.5509 3.0981 18 1 -0.0623 -4.4970 3.0928 19 6 -1.9533 -3.5116 2.8789 20 7 -2.5880 -2.3586 2.8849 21 14 -2.8964 -5.0953 2.5755 22 1 -3.3702 -5.6453 3.8709 23 1 -4.0629 -4.8166 1.6998 24 1 -2.0059 -6.0828 1.9144 25 6 1.5239 -0.3219 4.8950 26 6 2.1342 1.0783 5.0244 27 8 3.5579 0.9730 5.0874 28 6 4.1514 0.3847 3.9280 29 6 3.6239 -1.0420 3.7547 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2054 35 1 3.2320 1.5149 -2.6574 36 1 -0.1767 0.8631 -5.0274 37 1 1.2143 0.5812 2.5451 38 1 2.0395 -2.9490 2.7244 39 1 1.7588 -2.9616 4.4820 40 1 -0.3597 -1.5403 3.3262 41 1 -3.5454 -2.3311 2.7322 42 1 0.4408 -0.2422 4.8016 43 1 1.7719 -0.9101 5.7785 44 1 1.7642 1.5530 5.9332 45 1 1.8520 1.6789 4.1598 46 1 5.2345 0.3599 4.0470 47 1 3.8957 0.9760 3.0489 48 1 3.9143 -1.6448 4.6152 49 1 4.0413 -1.4779 2.8471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274001966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:38 Heat of formation + Delta-G solvation = -42.531742 kcal Electronic energy + Delta-G solvation = -31015.855940 eV Core-core repulsion = 26977.965075 eV Total energy + Delta-G solvation = -4037.890865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.96611 -41.76444 -39.69740 -37.31296 -35.92867 -35.43883 -33.39427 -33.03331 -32.25171 -32.01072 -30.69439 -28.17097 -27.32300 -25.50841 -24.94512 -24.41249 -22.99608 -22.42275 -21.89467 -21.01832 -20.25435 -19.24123 -18.77919 -18.11093 -17.14836 -17.00529 -16.84852 -16.39155 -16.30718 -16.03632 -15.64679 -15.40955 -15.26078 -15.11000 -14.87293 -14.67041 -14.37801 -14.17792 -14.01010 -13.79779 -13.50685 -13.41801 -13.26068 -13.05890 -13.00983 -12.80440 -12.78672 -12.29286 -12.26744 -12.12645 -12.09894 -11.95430 -11.61078 -11.33541 -10.99934 -10.93472 -10.91307 -10.61173 -10.37808 -9.84277 -9.27310 -8.93106 -7.94585 -5.19635 1.13243 1.43148 1.44583 1.52029 1.77071 2.19111 2.26433 2.40558 2.54365 2.98243 3.37938 3.55527 3.68108 3.80562 3.84090 3.87945 3.95793 3.98476 4.03016 4.22787 4.27123 4.30211 4.38078 4.44686 4.50474 4.64719 4.67949 4.73778 4.77596 4.79202 4.82221 4.87429 4.88167 4.90180 5.09464 5.10101 5.13963 5.17050 5.24208 5.26361 5.40860 5.47906 5.70045 5.82011 6.26854 6.27670 6.55272 6.68225 7.15337 7.36167 7.40692 8.09423 8.39809 9.27504 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007322 B = 0.004988 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.291240 B = 5612.370646 C = 8597.453347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 H 0.121 0.879 4 C -0.016 4.016 5 C -0.014 4.014 6 C -0.040 4.040 7 N -0.533 5.533 8 C 0.187 3.813 9 N -0.561 5.561 10 H 0.429 0.571 11 C 0.526 3.474 12 O -0.567 6.567 13 N -0.705 5.705 14 C 0.181 3.819 15 C 0.145 3.855 16 N -0.723 5.723 17 C -0.241 4.241 18 H 0.058 0.942 19 C -0.060 4.060 20 N -0.956 5.956 21 Si 0.960 3.040 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C -0.148 4.148 26 C 0.066 3.934 27 O -0.393 6.393 28 C 0.072 3.928 29 C -0.156 4.156 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.177 0.823 36 H 0.241 0.759 37 H 0.405 0.595 38 H 0.025 0.975 39 H 0.011 0.989 40 H 0.379 0.621 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 10.762 -5.655 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.113 4.113 3 H 0.139 0.861 4 C -0.055 4.055 5 C -0.131 4.131 6 C -0.188 4.188 7 N -0.253 5.253 8 C -0.097 4.097 9 N -0.165 5.165 10 H 0.268 0.732 11 C 0.313 3.687 12 O -0.446 6.446 13 N -0.356 5.356 14 C 0.095 3.905 15 C 0.017 3.983 16 N -0.367 5.367 17 C -0.373 4.373 18 H 0.076 0.924 19 C -0.253 4.253 20 N -0.607 5.607 21 Si 0.790 3.210 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.187 4.187 26 C -0.011 4.011 27 O -0.312 6.312 28 C -0.005 4.005 29 C -0.195 4.195 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.194 0.806 36 H 0.257 0.743 37 H 0.241 0.759 38 H 0.043 0.957 39 H 0.029 0.971 40 H 0.212 0.788 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.130 0.870 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.718 10.607 -6.110 15.629 hybrid contribution -2.038 -1.857 0.320 2.776 sum 7.680 8.750 -5.789 13.002 Atomic orbital electron populations 1.21596 0.92734 1.01457 1.02652 1.21247 0.97270 1.01463 0.91359 0.86072 1.19683 1.02142 0.96403 0.87263 1.21144 0.91540 1.02330 0.98065 1.22317 1.02624 0.98128 0.95685 1.70269 1.07036 1.28381 1.19572 1.25639 0.99567 0.89208 0.95292 1.43427 1.21101 1.29114 1.22887 0.73160 1.20765 0.78861 0.83934 0.85130 1.90614 1.39303 1.27519 1.87134 1.45846 1.58297 1.26586 1.04903 1.20386 0.94348 0.90831 0.84977 1.21082 0.84876 0.95113 0.97244 1.42187 1.02521 1.05869 1.86093 1.19442 0.90758 0.87715 1.39365 0.92397 1.25253 0.97132 0.99204 1.03693 1.69750 1.08232 1.24389 1.58296 0.85355 0.78231 0.80090 0.77346 1.21621 1.21819 1.20614 1.22395 1.01189 0.98300 0.96781 1.22695 0.80380 0.94439 1.03587 1.87903 1.20441 1.81650 1.41218 1.22538 0.98509 0.91299 0.88151 1.22472 0.94168 0.99409 1.03469 0.91986 0.91113 0.94744 0.92237 0.88715 0.80580 0.74334 0.75882 0.95678 0.97083 0.78777 0.94074 0.90780 0.90271 0.86979 0.91871 0.87469 0.92615 0.90687 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.91 71.98 0.64 -2.75 16 2 C -0.09 -2.22 2.71 -11.54 -0.03 -2.25 16 3 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 4 C -0.02 -0.38 4.59 29.85 0.14 -0.24 16 5 C -0.01 -0.32 5.57 40.95 0.23 -0.09 16 6 C -0.04 -0.94 11.79 83.52 0.98 0.05 16 7 N -0.53 -13.12 11.25 -200.32 -2.25 -15.37 16 8 C 0.19 3.44 13.04 180.26 2.35 5.79 16 9 N -0.56 -10.48 5.78 -186.50 -1.08 -11.56 16 10 H 0.43 6.52 8.96 -92.70 -0.83 5.69 16 11 C 0.53 15.97 6.57 87.66 0.58 16.54 16 12 O -0.57 -21.13 12.23 -3.02 -0.04 -21.17 16 13 N -0.70 -19.60 3.61 -422.38 -1.52 -21.13 16 14 C 0.18 5.55 0.32 3.72 0.00 5.55 16 15 C 0.14 6.00 4.79 86.38 0.41 6.41 16 16 N -0.72 -35.16 5.21 -343.46 -1.79 -36.95 16 17 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 18 H 0.06 3.26 7.83 -2.91 -0.02 3.23 16 19 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 20 N -0.96 -54.77 13.06 21.65 0.28 -54.48 16 21 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 C -0.15 -4.07 4.84 30.75 0.15 -3.92 16 26 C 0.07 1.39 6.67 72.08 0.48 1.87 16 27 O -0.39 -9.34 10.77 -148.98 -1.60 -10.95 16 28 C 0.07 1.58 6.68 72.01 0.48 2.06 16 29 C -0.16 -4.26 4.82 30.68 0.15 -4.12 16 30 H 0.06 1.68 7.69 -2.39 -0.02 1.66 16 31 H 0.07 1.65 7.07 -2.38 -0.02 1.63 16 32 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.27 7.95 -2.39 -0.02 2.25 16 35 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.24 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.41 9.47 6.99 -92.70 -0.65 8.82 16 38 H 0.03 1.18 6.25 -2.39 -0.01 1.17 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.38 18.66 6.51 -92.71 -0.60 18.06 16 41 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.07 2.28 7.22 -2.39 -0.02 2.26 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.15 7.01 -2.39 -0.02 1.13 16 46 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16 48 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 49 H 0.08 2.46 6.26 -2.39 -0.01 2.44 16 Total: -1.00 -71.29 386.64 0.80 -70.50 By element: Atomic # 1 Polarization: 45.08 SS G_CDS: -1.09 Total: 43.99 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 7.87 Total: 9.56 kcal Atomic # 7 Polarization: -133.13 SS G_CDS: -6.36 Total: -139.50 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.64 Total: -32.12 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.29 0.80 -70.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274001966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds