Wall clock time and date at job start Tue Mar 31 2020 20:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47132 * 2 1 4 4 C 1.53006 * 109.47166 * 120.00049 * 2 1 3 5 5 C 1.52992 * 109.47223 * 185.00400 * 4 2 1 6 6 N 1.46496 * 109.47337 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00339 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99971 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00164 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.46456 * 299.99542 * 9 7 6 11 11 C 1.52997 * 109.47238 * 59.99708 * 9 7 6 12 12 C 1.52992 * 109.47161 * 180.02562 * 9 7 6 13 13 C 1.53002 * 109.47278 * 174.99905 * 12 9 7 14 14 C 1.50701 * 109.47206 * 179.97438 * 13 12 9 15 15 C 1.38246 * 119.97514 * 269.72388 * 14 13 12 16 16 C 1.38199 * 120.02098 * 179.72712 * 15 14 13 17 17 C 1.38458 * 119.97769 * 0.56701 * 16 15 14 18 18 F 1.35093 * 120.02449 * 179.68054 * 17 16 15 19 19 C 1.38458 * 119.94775 * 359.70744 * 17 16 15 20 20 C 1.38203 * 119.97535 * 0.02562 * 19 17 16 21 21 N 1.46498 * 109.47473 * 239.99807 * 2 1 3 22 22 C 1.36939 * 119.99874 * 84.99851 * 21 2 1 23 23 H 1.08002 * 120.00013 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99908 * 180.02562 * 22 21 2 25 25 N 1.31621 * 120.00158 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47351 * 59.99617 * 26 24 22 28 28 H 1.48504 * 109.47373 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46960 * 299.99568 * 26 24 22 30 30 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47108 * 300.00173 * 1 2 3 32 32 H 1.09002 * 109.46738 * 60.00435 * 1 2 3 33 33 H 1.08996 * 109.47129 * 64.99569 * 4 2 1 34 34 H 1.08998 * 109.46509 * 305.00324 * 4 2 1 35 35 H 1.08996 * 109.47747 * 59.99547 * 5 4 2 36 36 H 1.09001 * 109.47066 * 299.99881 * 5 4 2 37 37 H 0.97005 * 119.99865 * 0.02562 * 6 5 4 38 38 H 1.09002 * 109.47153 * 180.02562 * 11 9 7 39 39 H 1.09001 * 109.46832 * 60.00314 * 11 9 7 40 40 H 1.09004 * 109.47261 * 300.00295 * 11 9 7 41 41 H 1.09002 * 109.46906 * 294.99838 * 12 9 7 42 42 H 1.09006 * 109.47717 * 54.99213 * 12 9 7 43 43 H 1.09000 * 109.46593 * 299.99796 * 13 12 9 44 44 H 1.08998 * 109.46891 * 59.99794 * 13 12 9 45 45 H 1.07997 * 119.98268 * 359.97438 * 15 14 13 46 46 H 1.08001 * 120.00464 * 180.25501 * 16 15 14 47 47 H 1.08000 * 120.01279 * 179.97438 * 19 17 16 48 48 H 1.07994 * 119.98449 * 180.02562 * 20 19 17 49 49 H 0.97001 * 120.00320 * 265.00254 * 21 2 1 50 50 H 0.97004 * 119.99578 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3033 2.5102 7 6 5.3740 -1.3394 2.7755 8 8 6.1584 -0.8010 2.0235 9 6 5.8763 -2.0498 4.0060 10 1 5.4419 -1.5900 4.8937 11 6 5.4711 -3.5239 3.9451 12 6 7.4010 -1.9417 4.0706 13 6 7.9007 -2.5533 5.3810 14 6 9.4027 -2.4474 5.4443 15 6 10.1888 -3.4682 4.9432 16 6 11.5663 -3.3695 4.9957 17 6 12.1589 -2.2530 5.5610 18 9 13.5052 -2.1585 5.6186 19 6 11.3704 -1.2339 6.0676 20 6 9.9931 -1.3322 6.0091 21 7 2.0184 -0.6906 -1.1961 22 6 2.1492 -0.0075 -2.3757 23 1 1.8927 1.0405 -2.4241 24 6 2.6115 -0.6620 -3.5092 25 7 2.9246 -1.9391 -3.4501 26 14 2.7906 0.2700 -5.1181 27 1 3.7465 1.3919 -4.9366 28 1 3.2995 -0.6484 -6.1683 29 1 1.4685 0.8077 -5.5285 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2618 2.1369 35 1 3.8532 0.4369 1.3574 36 1 3.9994 -1.0727 0.4261 37 1 3.4257 -1.7349 3.1112 38 1 5.8341 -4.0376 4.8353 39 1 5.9056 -3.9836 3.0574 40 1 4.3848 -3.6006 3.8993 41 1 7.8393 -2.4780 3.2289 42 1 7.6933 -0.8925 4.0246 43 1 7.4624 -2.0170 6.2226 44 1 7.6086 -3.6024 5.4269 45 1 9.7263 -4.3412 4.5071 46 1 12.1802 -4.1652 4.6004 47 1 11.8315 -0.3628 6.5091 48 1 9.3780 -0.5372 6.4039 49 1 2.2491 -1.6318 -1.1526 50 1 3.2480 -2.3963 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274731673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:25 Heat of formation + Delta-G solvation = -78.233664 kcal Electronic energy + Delta-G solvation = -27719.172526 eV Core-core repulsion = 23659.813547 eV Total energy + Delta-G solvation = -4059.358978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.17428 -39.98981 -39.38053 -36.70378 -35.66929 -34.35245 -32.50533 -32.03164 -31.47582 -29.33612 -28.38776 -27.82541 -25.46879 -23.96431 -23.40130 -23.15590 -21.98464 -21.07069 -20.18400 -19.40824 -17.99504 -17.30511 -16.99406 -16.74544 -16.04292 -15.85652 -15.57265 -15.53494 -15.08097 -14.52040 -14.44081 -14.05130 -13.88924 -13.85174 -13.66115 -13.50253 -13.38067 -13.00507 -12.86314 -12.53615 -12.46500 -12.05968 -11.99538 -11.84140 -11.66475 -11.53320 -11.36196 -11.10402 -11.03790 -10.88567 -10.84836 -10.71520 -10.61866 -10.28689 -10.00035 -9.62695 -9.51449 -9.45187 -8.90008 -8.83950 -8.76453 -6.93506 -5.73297 -3.01905 0.79955 0.88927 2.81703 3.19570 3.38761 3.46982 3.51615 3.52212 3.95005 4.31354 4.34648 4.55385 4.61993 4.62927 4.69497 4.79526 4.89737 4.91953 5.16379 5.19547 5.24388 5.31943 5.38501 5.40800 5.54076 5.57286 5.59607 5.60654 5.70326 5.74068 5.78241 5.79740 5.88978 5.90043 5.99956 6.07974 6.15736 6.18774 6.23623 6.36115 6.40735 6.50633 6.56076 6.70250 6.73800 6.87388 7.06871 7.68972 7.73106 8.42416 8.45152 9.56403 10.13082 10.47630 11.49274 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.001843 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.656158 B =15191.031502 C =16449.551158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.729 5.729 7 C 0.510 3.490 8 O -0.537 6.537 9 C -0.110 4.110 10 H 0.095 0.905 11 C -0.147 4.147 12 C -0.096 4.096 13 C -0.082 4.082 14 C -0.087 4.087 15 C -0.087 4.087 16 C -0.151 4.151 17 C 0.089 3.911 18 F -0.143 7.143 19 C -0.152 4.152 20 C -0.088 4.088 21 N -0.723 5.723 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.395 0.605 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 -3.830 25.513 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.380 5.380 7 C 0.295 3.705 8 O -0.413 6.413 9 C -0.131 4.131 10 H 0.113 0.887 11 C -0.204 4.204 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.087 4.087 15 C -0.105 4.105 16 C -0.170 4.170 17 C 0.070 3.930 18 F -0.121 7.121 19 C -0.170 4.170 20 C -0.106 4.106 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.150 0.850 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.490 -3.305 24.795 27.125 hybrid contribution 0.071 -0.003 -0.726 0.730 sum 10.561 -3.309 24.069 26.491 Atomic orbital electron populations 1.22424 0.99168 1.00801 0.99935 1.20159 0.91856 0.95583 0.86078 0.93335 1.22049 0.93995 1.01718 0.99265 1.21440 0.94333 0.97126 0.87253 1.46140 1.07306 1.57065 1.27479 1.20576 0.82421 0.80356 0.87136 1.90740 1.55267 1.45701 1.49581 1.21321 0.97597 0.97252 0.96967 0.88695 1.21847 1.01788 0.93839 1.02975 1.21392 0.92617 1.02498 0.96849 1.20715 0.90255 1.02380 0.98562 1.19984 0.96269 0.94287 0.98203 1.20960 0.92388 0.98952 0.98235 1.21163 0.95927 0.97883 1.02020 1.17742 0.76935 0.96508 1.01809 1.91495 1.29644 1.96426 1.94566 1.21154 0.94305 0.98972 1.02613 1.20949 0.93638 0.97633 0.98379 1.42436 1.78093 1.10629 1.05332 1.19176 1.36600 0.93804 0.87346 0.91279 1.24726 1.02171 0.95972 0.98053 1.69646 1.50876 1.08658 1.28947 0.86292 0.77713 0.78671 0.83657 1.21262 1.21751 1.21365 0.93545 0.94607 0.92738 0.91663 0.92015 0.91979 0.89806 0.77165 0.91364 0.91776 0.92055 0.90849 0.90791 0.90680 0.90355 0.84898 0.84776 0.84816 0.84962 0.78306 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.30 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.12 1.99 5.56 -4.05 -0.02 1.97 16 6 N -0.73 -9.37 5.45 -60.30 -0.33 -9.69 16 7 C 0.51 7.10 7.15 -10.98 -0.08 7.02 16 8 O -0.54 -10.21 15.92 5.56 0.09 -10.12 16 9 C -0.11 -0.99 2.72 -91.77 -0.25 -1.24 16 10 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.15 -1.08 8.85 37.16 0.33 -0.75 16 12 C -0.10 -0.89 4.01 -26.73 -0.11 -1.00 16 13 C -0.08 -0.53 5.10 -27.88 -0.14 -0.67 16 14 C -0.09 -0.68 5.13 -104.61 -0.54 -1.22 16 15 C -0.09 -0.68 9.70 -39.59 -0.38 -1.06 16 16 C -0.15 -1.27 10.03 -39.51 -0.40 -1.66 16 17 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 18 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 19 C -0.15 -1.26 10.03 -39.51 -0.40 -1.65 16 20 C -0.09 -0.67 9.70 -39.59 -0.38 -1.06 16 21 N -0.72 -17.66 4.57 -53.42 -0.24 -17.91 16 22 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 26 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.74 7.75 -51.93 -0.40 1.34 16 37 H 0.39 3.71 7.89 -40.82 -0.32 3.39 16 38 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.81 7.96 -51.93 -0.41 0.39 16 43 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 44 H 0.08 0.42 6.51 -51.93 -0.34 0.08 16 45 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 50 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 414.95 15.07 6.25 6.25 Total: -1.00 -33.71 414.95 -9.78 -43.48 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.41 Total: 8.76 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.88 Total: -9.44 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.15 Total: -55.20 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.71 -9.78 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274731673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.750 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds