Wall clock time and date at job start Tue Mar 31 2020 20:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47132 * 2 1 4 4 C 1.53006 * 109.47166 * 120.00049 * 2 1 3 5 5 C 1.52992 * 109.47223 * 185.00400 * 4 2 1 6 6 N 1.46496 * 109.47337 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00339 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99971 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00164 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.46456 * 299.99542 * 9 7 6 11 11 C 1.52997 * 109.47238 * 59.99708 * 9 7 6 12 12 C 1.52992 * 109.47161 * 180.02562 * 9 7 6 13 13 C 1.53002 * 109.47278 * 174.99905 * 12 9 7 14 14 C 1.50701 * 109.47206 * 179.97438 * 13 12 9 15 15 C 1.38246 * 119.97514 * 269.72388 * 14 13 12 16 16 C 1.38199 * 120.02098 * 179.72712 * 15 14 13 17 17 C 1.38458 * 119.97769 * 0.56701 * 16 15 14 18 18 F 1.35093 * 120.02449 * 179.68054 * 17 16 15 19 19 C 1.38458 * 119.94775 * 359.70744 * 17 16 15 20 20 C 1.38203 * 119.97535 * 0.02562 * 19 17 16 21 21 N 1.46498 * 109.47473 * 239.99807 * 2 1 3 22 22 C 1.36939 * 119.99874 * 84.99851 * 21 2 1 23 23 H 1.08002 * 120.00013 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99908 * 180.02562 * 22 21 2 25 25 N 1.31621 * 120.00158 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47351 * 59.99617 * 26 24 22 28 28 H 1.48504 * 109.47373 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46960 * 299.99568 * 26 24 22 30 30 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47108 * 300.00173 * 1 2 3 32 32 H 1.09002 * 109.46738 * 60.00435 * 1 2 3 33 33 H 1.08996 * 109.47129 * 64.99569 * 4 2 1 34 34 H 1.08998 * 109.46509 * 305.00324 * 4 2 1 35 35 H 1.08996 * 109.47747 * 59.99547 * 5 4 2 36 36 H 1.09001 * 109.47066 * 299.99881 * 5 4 2 37 37 H 0.97005 * 119.99865 * 0.02562 * 6 5 4 38 38 H 1.09002 * 109.47153 * 180.02562 * 11 9 7 39 39 H 1.09001 * 109.46832 * 60.00314 * 11 9 7 40 40 H 1.09004 * 109.47261 * 300.00295 * 11 9 7 41 41 H 1.09002 * 109.46906 * 294.99838 * 12 9 7 42 42 H 1.09006 * 109.47717 * 54.99213 * 12 9 7 43 43 H 1.09000 * 109.46593 * 299.99796 * 13 12 9 44 44 H 1.08998 * 109.46891 * 59.99794 * 13 12 9 45 45 H 1.07997 * 119.98268 * 359.97438 * 15 14 13 46 46 H 1.08001 * 120.00464 * 180.25501 * 16 15 14 47 47 H 1.08000 * 120.01279 * 179.97438 * 19 17 16 48 48 H 1.07994 * 119.98449 * 180.02562 * 20 19 17 49 49 H 0.97001 * 120.00320 * 265.00254 * 21 2 1 50 50 H 0.97004 * 119.99578 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3033 2.5102 7 6 5.3740 -1.3394 2.7755 8 8 6.1584 -0.8010 2.0235 9 6 5.8763 -2.0498 4.0060 10 1 5.4419 -1.5900 4.8937 11 6 5.4711 -3.5239 3.9451 12 6 7.4010 -1.9417 4.0706 13 6 7.9007 -2.5533 5.3810 14 6 9.4027 -2.4474 5.4443 15 6 10.1888 -3.4682 4.9432 16 6 11.5663 -3.3695 4.9957 17 6 12.1589 -2.2530 5.5610 18 9 13.5052 -2.1585 5.6186 19 6 11.3704 -1.2339 6.0676 20 6 9.9931 -1.3322 6.0091 21 7 2.0184 -0.6906 -1.1961 22 6 2.1492 -0.0075 -2.3757 23 1 1.8927 1.0405 -2.4241 24 6 2.6115 -0.6620 -3.5092 25 7 2.9246 -1.9391 -3.4501 26 14 2.7906 0.2700 -5.1181 27 1 3.7465 1.3919 -4.9366 28 1 3.2995 -0.6484 -6.1683 29 1 1.4685 0.8077 -5.5285 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2618 2.1369 35 1 3.8532 0.4369 1.3574 36 1 3.9994 -1.0727 0.4261 37 1 3.4257 -1.7349 3.1112 38 1 5.8341 -4.0376 4.8353 39 1 5.9056 -3.9836 3.0574 40 1 4.3848 -3.6006 3.8993 41 1 7.8393 -2.4780 3.2289 42 1 7.6933 -0.8925 4.0246 43 1 7.4624 -2.0170 6.2226 44 1 7.6086 -3.6024 5.4269 45 1 9.7263 -4.3412 4.5071 46 1 12.1802 -4.1652 4.6004 47 1 11.8315 -0.3628 6.5091 48 1 9.3780 -0.5372 6.4039 49 1 2.2491 -1.6318 -1.1526 50 1 3.2480 -2.3963 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274731673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:24 Heat of formation + Delta-G solvation = -98.572754 kcal Electronic energy + Delta-G solvation = -27720.054495 eV Core-core repulsion = 23659.813547 eV Total energy + Delta-G solvation = -4060.240947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.90600 -40.99813 -40.08553 -38.18774 -36.51546 -35.80613 -34.15450 -32.96475 -32.06463 -30.99721 -29.66814 -28.70750 -26.23487 -25.79013 -24.40329 -23.99433 -22.99079 -21.89939 -21.47273 -20.56603 -19.26101 -18.65644 -18.04410 -17.39725 -17.08839 -16.87250 -16.60756 -16.51032 -16.32459 -15.86438 -15.37848 -15.30161 -15.16991 -14.80409 -14.55459 -14.42505 -14.36867 -14.12246 -13.98053 -13.57110 -13.54403 -13.29879 -13.22732 -12.79682 -12.62829 -12.57390 -12.47558 -12.39403 -12.30093 -12.21489 -12.11495 -11.96755 -11.72900 -11.62103 -11.58068 -11.48941 -10.94594 -10.67359 -10.05097 -10.03367 -9.48428 -8.97327 -7.92769 -5.19204 0.16203 0.29378 1.44983 1.48152 1.53484 1.71922 2.27200 2.56773 2.63297 3.31586 3.41153 3.68282 3.77790 3.79286 3.92982 3.97149 4.02807 4.03573 4.17222 4.24097 4.32066 4.37045 4.38873 4.53983 4.57591 4.64296 4.68340 4.79003 4.81847 4.90345 4.96323 5.02865 5.04192 5.05009 5.11966 5.12352 5.15618 5.18394 5.25730 5.30103 5.39779 5.40979 5.46675 5.53460 5.54646 5.62857 5.65311 5.96632 6.30362 6.65993 7.36154 7.37318 8.14863 8.35809 9.30540 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.001843 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.656158 B =15191.031502 C =16449.551158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.501 3.499 8 O -0.597 6.597 9 C -0.097 4.097 10 H 0.132 0.868 11 C -0.145 4.145 12 C -0.092 4.092 13 C -0.071 4.071 14 C -0.094 4.094 15 C -0.095 4.095 16 C -0.161 4.161 17 C 0.064 3.936 18 F -0.154 7.154 19 C -0.160 4.160 20 C -0.093 4.093 21 N -0.734 5.734 22 C -0.233 4.233 23 H 0.073 0.927 24 C -0.080 4.080 25 N -0.969 5.969 26 Si 0.966 3.034 27 H -0.283 1.283 28 H -0.297 1.297 29 H -0.276 1.276 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.031 0.969 37 H 0.417 0.583 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.152 0.848 49 H 0.372 0.628 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -3.785 28.378 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.366 5.366 7 C 0.289 3.711 8 O -0.478 6.478 9 C -0.118 4.118 10 H 0.150 0.850 11 C -0.203 4.203 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.094 4.094 15 C -0.112 4.112 16 C -0.179 4.179 17 C 0.045 3.955 18 F -0.133 7.133 19 C -0.178 4.178 20 C -0.111 4.111 21 N -0.375 5.375 22 C -0.366 4.366 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.118 0.882 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.170 0.830 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.565 -3.244 27.728 29.202 hybrid contribution 0.634 0.043 -1.550 1.675 sum 9.199 -3.201 26.178 27.931 Atomic orbital electron populations 1.22255 0.97064 1.01065 1.00835 1.20483 0.93207 0.95153 0.85800 0.94159 1.21897 0.92471 1.02050 0.98812 1.21048 0.95351 0.95956 0.86871 1.45942 1.07716 1.56435 1.26474 1.21638 0.82022 0.79445 0.88016 1.90717 1.56743 1.48342 1.51977 1.21359 0.97158 0.97997 0.95282 0.84981 1.21889 1.02590 0.92310 1.03477 1.21319 0.92974 1.01076 0.97675 1.20687 0.89162 1.03592 0.97378 1.20251 0.97203 0.94199 0.97788 1.21236 0.92202 0.99743 0.98059 1.21378 0.96583 0.97988 1.01995 1.18054 0.76692 0.97588 1.03183 1.91459 1.30454 1.96557 1.94797 1.21386 0.94785 0.99137 1.02512 1.21247 0.93557 0.98162 0.98127 1.42634 1.78385 1.10214 1.06279 1.19563 1.34442 0.94053 0.88498 0.90892 1.25496 1.03382 0.96910 1.01361 1.69801 1.52894 1.10120 1.29251 0.85310 0.77928 0.77301 0.79858 1.20950 1.22374 1.20204 0.93571 0.90526 0.94994 0.90930 0.87585 0.93531 0.95063 0.74582 0.88222 0.93990 0.90810 0.93461 0.92922 0.88357 0.88465 0.83278 0.83834 0.83652 0.83001 0.79657 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 2 C 0.16 5.99 2.89 44.99 0.13 6.12 16 3 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 4 C -0.11 -3.16 4.87 30.59 0.15 -3.01 16 5 C 0.13 4.34 5.56 86.38 0.48 4.82 16 6 N -0.71 -17.30 5.45 -463.08 -2.52 -19.83 16 7 C 0.50 13.69 7.15 87.66 0.63 14.32 16 8 O -0.60 -23.71 15.92 -3.04 -0.05 -23.76 16 9 C -0.10 -1.50 2.72 -11.54 -0.03 -1.53 16 10 H 0.13 1.14 8.14 -2.39 -0.02 1.13 16 11 C -0.15 -1.68 8.85 71.98 0.64 -1.04 16 12 C -0.09 -1.60 4.01 30.59 0.12 -1.48 16 13 C -0.07 -0.71 5.10 29.85 0.15 -0.56 16 14 C -0.09 -1.31 5.13 -19.86 -0.10 -1.41 16 15 C -0.09 -1.38 9.70 22.26 0.22 -1.16 16 16 C -0.16 -2.69 10.03 22.31 0.22 -2.46 16 17 C 0.06 1.22 7.30 22.37 0.16 1.38 16 18 F -0.15 -3.29 17.27 44.97 0.78 -2.51 16 19 C -0.16 -2.58 10.03 22.31 0.22 -2.36 16 20 C -0.09 -1.30 9.70 22.26 0.22 -1.08 16 21 N -0.73 -36.40 4.57 -322.92 -1.48 -37.88 16 22 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 23 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 25 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 26 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 29 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.03 1.36 7.75 -2.39 -0.02 1.34 16 37 H 0.42 6.41 7.89 -92.70 -0.73 5.67 16 38 H 0.10 0.57 6.57 -2.39 -0.02 0.56 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.69 7.56 -2.38 -0.02 0.67 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.13 7.96 -2.38 -0.02 1.12 16 43 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 44 H 0.10 0.64 6.51 -2.39 -0.02 0.62 16 45 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 48 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 49 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 50 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -78.56 414.95 3.71 -74.85 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.52 Total: 30.00 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.19 Total: -10.14 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -3.72 Total: -118.06 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -78.56 3.71 -74.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274731673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.718 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds