Wall clock time and date at job start Tue Mar 31 2020 20:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47344 * 2 1 4 4 C 1.53007 * 109.46791 * 119.99747 * 2 1 3 5 5 N 1.46496 * 109.46880 * 174.99890 * 4 2 1 6 6 C 1.46496 * 120.00189 * 270.00049 * 5 4 2 7 7 C 1.34773 * 119.99988 * 90.00048 * 5 4 2 8 8 O 1.21283 * 120.00273 * 3.65202 * 7 5 4 9 9 C 1.50703 * 119.99840 * 183.65249 * 7 5 4 10 10 H 1.08993 * 109.47168 * 313.99902 * 9 7 5 11 11 C 1.53006 * 109.47188 * 74.00615 * 9 7 5 12 12 C 1.53011 * 109.47016 * 194.00229 * 9 7 5 13 13 C 1.52991 * 109.46981 * 175.00191 * 12 9 7 14 14 C 1.50702 * 109.47198 * 180.02562 * 13 12 9 15 15 C 1.38216 * 120.01416 * 99.99664 * 14 13 12 16 16 C 1.38223 * 120.02930 * 179.97438 * 15 14 13 17 17 C 1.38271 * 120.04711 * 0.02562 * 16 15 14 18 18 C 1.38174 * 120.02889 * 0.02562 * 17 16 15 19 19 C 1.38435 * 120.01493 * 279.72461 * 14 13 12 20 20 F 1.35110 * 120.02358 * 359.97438 * 19 14 13 21 21 N 1.46499 * 109.47152 * 239.99351 * 2 1 3 22 22 C 1.36943 * 119.99652 * 85.00045 * 21 2 1 23 23 H 1.08001 * 120.00008 * 0.02562 * 22 21 2 24 24 C 1.38806 * 119.99899 * 180.02562 * 22 21 2 25 25 N 1.31628 * 120.00115 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00029 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47243 * 59.99657 * 26 24 22 28 28 H 1.48501 * 109.47163 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47186 * 299.99590 * 26 24 22 30 30 H 1.08997 * 109.46688 * 300.00400 * 1 2 3 31 31 H 1.08994 * 109.46645 * 60.00300 * 1 2 3 32 32 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47013 * 54.99798 * 4 2 1 34 34 H 1.08997 * 109.46839 * 294.99531 * 4 2 1 35 35 H 1.09005 * 109.47044 * 264.56915 * 6 5 4 36 36 H 1.09005 * 109.47426 * 24.56325 * 6 5 4 37 37 H 1.09002 * 109.47571 * 144.56432 * 6 5 4 38 38 H 1.08994 * 109.46699 * 295.87455 * 11 9 7 39 39 H 1.09001 * 109.47243 * 55.87756 * 11 9 7 40 40 H 1.09003 * 109.46899 * 175.87873 * 11 9 7 41 41 H 1.09002 * 109.46964 * 295.00368 * 12 9 7 42 42 H 1.08995 * 109.46816 * 55.00074 * 12 9 7 43 43 H 1.09002 * 109.47416 * 299.99900 * 13 12 9 44 44 H 1.09004 * 109.47538 * 60.00001 * 13 12 9 45 45 H 1.08002 * 119.98753 * 359.95560 * 15 14 13 46 46 H 1.08001 * 119.98040 * 180.02562 * 16 15 14 47 47 H 1.08000 * 119.98570 * 179.97438 * 17 16 15 48 48 H 1.07997 * 120.01429 * 179.97438 * 18 17 16 49 49 H 0.96993 * 120.00094 * 265.00628 * 21 2 1 50 50 H 0.96998 * 119.99763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1258 -1.9920 0.5614 7 6 4.2675 0.1491 1.7157 8 8 3.7514 1.0813 2.2950 9 6 5.7672 0.0817 1.5828 10 1 6.1090 -0.9233 1.8300 11 6 6.1675 0.4174 0.1447 12 6 6.4097 1.0885 2.5393 13 6 7.9311 0.9338 2.4959 14 6 8.5640 1.9249 3.4384 15 6 8.9868 1.5167 4.6894 16 6 9.5678 2.4254 5.5538 17 6 9.7261 3.7438 5.1685 18 6 9.3032 4.1546 3.9188 19 6 8.7272 3.2434 3.0494 20 9 8.3197 3.6423 1.8246 21 7 2.0184 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3757 23 1 1.8927 1.0404 -2.4242 24 6 2.6114 -0.6622 -3.5092 25 7 2.9244 -1.9393 -3.4500 26 14 2.7904 0.2697 -5.1181 27 1 3.7464 1.3914 -4.9367 28 1 3.2993 -0.6488 -6.1682 29 1 1.4685 0.8075 -5.5285 30 1 -0.3632 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -1.7198 1.2953 34 1 1.7517 -0.1582 2.1370 35 1 4.3702 -2.7300 1.3255 36 1 3.4354 -2.4302 -0.1593 37 1 5.0374 -1.6831 0.0498 38 1 5.7704 -0.3414 -0.5294 39 1 5.7628 1.3924 -0.1269 40 1 7.2544 0.4405 0.0661 41 1 6.1386 2.1003 2.2376 42 1 6.0544 0.9042 3.5531 43 1 8.2022 -0.0780 2.7976 44 1 8.2864 1.1180 1.4820 45 1 8.8629 0.4872 4.9917 46 1 9.8982 2.1054 6.5310 47 1 10.1798 4.4531 5.8449 48 1 9.4267 5.1845 3.6182 49 1 2.2490 -1.6318 -1.1525 50 1 3.2471 -2.3968 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277938287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:37 Heat of formation + Delta-G solvation = -72.455521 kcal Electronic energy + Delta-G solvation = -29638.824889 eV Core-core repulsion = 25579.716470 eV Total energy + Delta-G solvation = -4059.108419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.87664 -41.21815 -39.98099 -38.07066 -36.63759 -35.79667 -34.04117 -33.12758 -31.42043 -30.70077 -29.32628 -28.06814 -27.31128 -26.06254 -25.47059 -23.68196 -23.25410 -21.97933 -21.43622 -19.84987 -19.26347 -18.51634 -18.03116 -17.41300 -17.25130 -16.80987 -16.60773 -16.48829 -16.34165 -15.77025 -15.62024 -15.35358 -15.04680 -14.76220 -14.47151 -14.26072 -14.04313 -13.91709 -13.72543 -13.62458 -13.51262 -13.34816 -13.15166 -13.05600 -12.80952 -12.75241 -12.68658 -12.56403 -12.46358 -12.32780 -12.21966 -12.08005 -11.83371 -11.65790 -11.63364 -11.58510 -10.98242 -10.62471 -9.86517 -9.55722 -9.51267 -8.93274 -7.91447 -5.16393 0.22724 0.29928 1.45978 1.46364 1.52483 1.66701 2.18046 2.56613 2.68103 3.37292 3.41670 3.54144 3.59114 3.80447 3.88414 3.92659 4.05425 4.12095 4.15487 4.28356 4.32828 4.41309 4.42062 4.46906 4.49472 4.53859 4.62695 4.67399 4.71124 4.73829 4.85298 4.87164 4.91401 4.95190 5.01583 5.06884 5.15599 5.16440 5.24341 5.26950 5.33804 5.37709 5.42534 5.48195 5.51747 5.52611 5.71238 6.00904 6.31352 6.51530 7.24672 7.39460 8.11566 8.41527 9.30671 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.002752 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.155385 B =10171.362263 C =11083.391087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.016 0.984 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.078 3.922 7 C 0.510 3.490 8 O -0.590 6.590 9 C -0.097 4.097 10 H 0.125 0.875 11 C -0.140 4.140 12 C -0.081 4.081 13 C -0.077 4.077 14 C -0.126 4.126 15 C -0.093 4.093 16 C -0.127 4.127 17 C -0.098 4.098 18 C -0.166 4.166 19 C 0.064 3.936 20 F -0.156 7.156 21 N -0.721 5.721 22 C -0.233 4.233 23 H 0.055 0.945 24 C -0.060 4.060 25 N -0.956 5.956 26 Si 0.956 3.044 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.155 0.845 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.141 0.859 49 H 0.379 0.621 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.890 2.323 19.930 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.035 0.965 4 C -0.009 4.009 5 N -0.327 5.327 6 C -0.064 4.064 7 C 0.300 3.700 8 O -0.472 6.472 9 C -0.118 4.118 10 H 0.142 0.858 11 C -0.197 4.197 12 C -0.119 4.119 13 C -0.113 4.113 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.184 4.184 19 C 0.045 3.955 20 F -0.135 7.135 21 N -0.364 5.364 22 C -0.366 4.366 23 H 0.073 0.927 24 C -0.253 4.253 25 N -0.607 5.607 26 Si 0.787 3.213 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.173 0.827 46 H 0.176 0.824 47 H 0.176 0.824 48 H 0.159 0.841 49 H 0.214 0.786 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.598 2.921 20.042 24.967 hybrid contribution -0.411 0.634 -1.901 2.046 sum 14.187 3.555 18.141 23.302 Atomic orbital electron populations 1.22216 0.96934 1.01528 1.00588 1.20760 0.93246 0.94561 0.87110 0.96539 1.21738 0.79849 1.01797 0.97523 1.47725 1.06451 1.21848 1.56661 1.22072 0.99444 0.87074 0.97851 1.21182 0.90736 0.80998 0.77094 1.90612 1.76283 1.34940 1.45346 1.21282 0.89703 1.03128 0.97644 0.85759 1.21812 1.02899 1.01062 0.93970 1.21206 0.94280 0.97765 0.98662 1.20621 0.93207 0.99014 0.98506 1.20149 1.01792 0.92937 0.97814 1.21329 0.96680 1.01673 0.91433 1.21631 0.98783 0.93070 1.00988 1.21387 0.98105 0.97211 0.94859 1.21420 1.01569 1.00135 0.95311 1.18089 1.01628 0.94323 0.81421 1.91463 1.88758 1.91385 1.41872 1.42466 1.78405 1.10229 1.05330 1.19333 1.35094 0.93465 0.88660 0.92656 1.25214 1.03070 0.96810 1.00206 1.69726 1.52452 1.09328 1.29179 0.85479 0.77544 0.77535 0.80773 1.21396 1.21673 1.21223 0.91626 0.94613 0.92484 0.88886 0.89908 0.89922 0.91702 0.90594 0.92057 0.95101 0.89066 0.94295 0.91533 0.87518 0.90817 0.82716 0.82371 0.82398 0.84117 0.78579 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 9.49 71.99 0.68 -4.88 16 2 C 0.15 6.36 3.20 45.00 0.14 6.50 16 3 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 4 C 0.11 3.94 5.05 86.38 0.44 4.37 16 5 N -0.60 -20.11 2.73 -846.75 -2.31 -22.42 16 6 C 0.08 2.30 9.39 127.77 1.20 3.49 16 7 C 0.51 18.00 6.90 87.66 0.60 18.61 16 8 O -0.59 -25.01 15.64 -3.04 -0.05 -25.05 16 9 C -0.10 -2.62 1.89 -11.53 -0.02 -2.64 16 10 H 0.12 2.52 7.48 -2.39 -0.02 2.50 16 11 C -0.14 -4.17 8.78 71.98 0.63 -3.54 16 12 C -0.08 -2.11 3.98 30.60 0.12 -1.99 16 13 C -0.08 -1.52 4.83 29.85 0.14 -1.37 16 14 C -0.13 -2.57 5.14 -19.82 -0.10 -2.67 16 15 C -0.09 -1.38 9.67 22.26 0.22 -1.16 16 16 C -0.13 -1.53 10.04 22.27 0.22 -1.30 16 17 C -0.10 -1.29 10.04 22.26 0.22 -1.07 16 18 C -0.17 -3.07 10.03 22.31 0.22 -2.85 16 19 C 0.06 1.52 7.24 22.38 0.16 1.69 16 20 F -0.16 -4.49 16.66 44.97 0.75 -3.74 16 21 N -0.72 -35.10 4.57 -322.92 -1.47 -36.58 16 22 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 23 H 0.06 3.13 7.83 -2.91 -0.02 3.11 16 24 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 25 N -0.96 -55.09 13.06 21.65 0.28 -54.81 16 26 Si 0.96 46.30 29.55 68.60 2.03 48.33 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 34 H 0.08 2.81 7.37 -2.39 -0.02 2.79 16 35 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.06 2.26 5.77 -2.38 -0.01 2.25 16 37 H 0.08 2.24 4.57 -2.39 -0.01 2.23 16 38 H 0.06 2.01 5.81 -2.39 -0.01 2.00 16 39 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 2.18 6.38 -2.39 -0.02 2.16 16 41 H 0.04 1.27 8.09 -2.39 -0.02 1.25 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.11 1.48 8.00 -2.39 -0.02 1.46 16 44 H 0.07 1.56 6.28 -2.38 -0.01 1.55 16 45 H 0.16 1.48 8.04 -2.91 -0.02 1.46 16 46 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 49 H 0.38 18.74 5.40 -92.71 -0.50 18.24 16 50 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.19 403.13 5.85 -65.34 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.43 Total: 32.73 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 6.19 Total: -3.80 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -3.50 Total: -113.81 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.75 Total: -3.74 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.19 5.85 -65.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.113 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds