Wall clock time and date at job start Tue Mar 31 2020 20:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.52992 * 109.47195 * 240.00068 * 2 1 3 5 5 C 1.53001 * 109.47148 * 64.99898 * 4 2 1 6 6 C 1.50700 * 109.46803 * 179.97438 * 5 4 2 7 7 C 1.38225 * 120.00969 * 100.00331 * 6 5 4 8 8 C 1.38224 * 120.02472 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.05271 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02503 * 359.97438 * 9 8 7 11 11 C 1.38441 * 120.01735 * 279.72182 * 6 5 4 12 12 F 1.35098 * 120.02368 * 0.02562 * 11 6 5 13 13 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 14 14 O 1.21279 * 120.00113 * 120.00322 * 13 2 1 15 15 N 1.34784 * 119.99961 * 300.00090 * 13 2 1 16 16 C 1.46493 * 119.99864 * 359.72839 * 15 13 2 17 17 C 1.46494 * 119.99635 * 180.02562 * 15 13 2 18 18 C 1.53002 * 109.47325 * 90.00335 * 17 15 13 19 19 H 1.08996 * 109.46654 * 294.99413 * 18 17 15 20 20 C 1.53001 * 109.47112 * 174.99869 * 18 17 15 21 21 N 1.46500 * 109.47149 * 54.99558 * 18 17 15 22 22 C 1.36934 * 120.00050 * 205.00430 * 21 18 17 23 23 H 1.08006 * 119.99547 * 359.97438 * 22 21 18 24 24 C 1.38811 * 119.99987 * 180.02562 * 22 21 18 25 25 N 1.31618 * 120.00108 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99890 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47146 * 59.99713 * 26 24 22 28 28 H 1.48494 * 109.47142 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47315 * 300.00201 * 26 24 22 30 30 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 33 33 H 1.08999 * 109.47251 * 185.00222 * 4 2 1 34 34 H 1.08999 * 109.47140 * 304.99739 * 4 2 1 35 35 H 1.08998 * 109.47078 * 299.99354 * 5 4 2 36 36 H 1.08999 * 109.47230 * 59.99896 * 5 4 2 37 37 H 1.07996 * 119.98833 * 359.95221 * 7 6 5 38 38 H 1.07999 * 119.97257 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.98868 * 179.97438 * 9 8 7 40 40 H 1.08003 * 120.01403 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.47297 * 90.00011 * 16 15 13 42 42 H 1.09002 * 109.47192 * 209.99937 * 16 15 13 43 43 H 1.08996 * 109.47342 * 329.99648 * 16 15 13 44 44 H 1.09003 * 109.47006 * 210.00121 * 17 15 13 45 45 H 1.09004 * 109.47665 * 329.99813 * 17 15 13 46 46 H 1.08993 * 109.47175 * 59.99828 * 20 18 17 47 47 H 1.09001 * 109.46893 * 180.02562 * 20 18 17 48 48 H 1.09000 * 109.46901 * 299.99827 * 20 18 17 49 49 H 0.96999 * 119.99751 * 25.00309 * 21 18 17 50 50 H 0.96997 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6352 0.0690 -2.4953 6 6 2.1382 -0.6411 -3.7256 7 6 1.2791 -1.4282 -4.4693 8 6 1.7399 -2.0793 -5.5982 9 6 3.0606 -1.9445 -5.9846 10 6 3.9212 -1.1582 -5.2427 11 6 3.4593 -0.5008 -4.1149 12 9 4.2986 0.2724 -3.3917 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2499 2.4546 16 6 0.8694 0.9446 2.5890 17 6 2.1955 -0.9402 3.6507 18 6 3.5431 -0.3472 4.0670 19 1 4.2838 -0.5506 3.2938 20 6 3.9940 -0.9809 5.3846 21 7 3.4059 1.1007 4.2431 22 6 4.4996 1.9135 4.1078 23 1 5.4634 1.4870 3.8716 24 6 4.3698 3.2854 4.2752 25 7 3.1954 3.8049 4.5636 26 14 5.8619 4.3941 4.0913 27 1 6.4193 4.2508 2.7224 28 1 5.4603 5.8058 4.3165 29 1 6.8922 4.0069 5.0882 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 0.5489 0.1471 -2.5390 36 1 2.0698 1.0675 -2.4494 37 1 0.2475 -1.5349 -4.1680 38 1 1.0680 -2.6944 -6.1783 39 1 3.4197 -2.4540 -6.8666 40 1 4.9529 -1.0534 -5.5445 41 1 -0.1799 0.6512 2.6203 42 1 1.1279 1.4679 3.5096 43 1 1.0372 1.6036 1.7372 44 1 1.4775 -0.8151 4.4613 45 1 2.3170 -2.0015 3.4337 46 1 4.0960 -2.0581 5.2535 47 1 4.9538 -0.5580 5.6813 48 1 3.2531 -0.7775 6.1578 49 1 2.5404 1.4836 4.4556 50 1 3.1046 4.7636 4.6802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:42 Heat of formation + Delta-G solvation = -53.118448 kcal Electronic energy + Delta-G solvation = -29590.000936 eV Core-core repulsion = 25531.731035 eV Total energy + Delta-G solvation = -4058.269901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.94663 -39.92745 -39.23496 -36.52734 -35.50755 -34.24778 -32.56054 -31.77869 -30.73889 -28.92336 -28.34266 -26.70379 -26.01136 -24.83967 -23.62242 -22.98866 -22.20089 -20.91470 -19.95172 -18.60808 -17.71795 -17.25335 -16.73860 -16.56835 -16.11257 -15.67240 -15.61916 -15.12667 -14.83700 -14.45914 -14.37466 -13.97287 -13.74848 -13.52538 -13.32675 -13.19920 -12.95864 -12.79866 -12.56038 -12.41330 -12.19568 -12.06731 -11.93017 -11.83994 -11.58571 -11.35261 -11.34995 -11.20387 -11.08392 -10.81531 -10.71045 -10.66635 -10.59903 -10.33485 -10.06036 -9.61703 -9.27785 -9.15560 -8.89786 -8.79929 -8.07533 -6.92740 -5.76520 -3.02823 0.94826 0.97933 3.07801 3.33816 3.45219 3.49461 3.50360 3.51922 4.11400 4.41447 4.52258 4.61418 4.68378 4.73619 4.91028 5.01707 5.04619 5.13467 5.30407 5.38491 5.43137 5.51703 5.54047 5.56959 5.64401 5.70427 5.76239 5.80647 5.82993 5.86580 5.91321 5.92481 5.94896 6.02635 6.10899 6.15048 6.17944 6.29741 6.31508 6.37065 6.39630 6.42898 6.69099 6.74100 6.86919 6.92106 7.20874 7.72897 7.87099 8.43724 8.63447 9.54600 10.10786 10.46820 11.46513 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.002911 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.856420 B = 9615.753016 C =10673.220724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.090 4.090 5 C -0.083 4.083 6 C -0.109 4.109 7 C -0.090 4.090 8 C -0.131 4.131 9 C -0.099 4.099 10 C -0.154 4.154 11 C 0.102 3.898 12 F -0.133 7.133 13 C 0.520 3.480 14 O -0.552 6.552 15 N -0.594 5.594 16 C 0.080 3.920 17 C 0.110 3.890 18 C 0.154 3.846 19 H 0.051 0.949 20 C -0.162 4.162 21 N -0.719 5.719 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.014 4.014 25 N -0.937 5.937 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.046 0.954 49 H 0.381 0.619 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -10.526 -17.728 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.131 4.131 3 H 0.118 0.882 4 C -0.128 4.128 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.149 4.149 9 C -0.118 4.118 10 C -0.173 4.173 11 C 0.083 3.917 12 F -0.112 7.112 13 C 0.308 3.692 14 O -0.431 6.431 15 N -0.325 5.325 16 C -0.063 4.063 17 C -0.013 4.013 18 C 0.043 3.957 19 H 0.069 0.931 20 C -0.223 4.223 21 N -0.363 5.363 22 C -0.361 4.361 23 H 0.085 0.915 24 C -0.209 4.209 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.484 -10.916 -17.765 22.511 hybrid contribution 0.858 1.122 0.221 1.430 sum -7.626 -9.794 -17.544 21.492 Atomic orbital electron populations 1.22085 0.93340 1.02580 1.03347 1.21256 0.97358 1.01286 0.93171 0.88227 1.21316 1.02245 0.98511 0.90759 1.20678 1.01522 0.98966 0.90896 1.20022 0.92341 1.00221 0.98422 1.20976 0.99633 0.95768 0.94463 1.21191 0.95979 1.00397 0.97376 1.20984 0.93402 0.97920 0.99446 1.21178 1.01298 0.99436 0.95381 1.17644 0.87977 0.94091 0.92014 1.91534 1.70476 1.72516 1.76665 1.20467 0.79858 0.84340 0.84519 1.90640 1.38520 1.27278 1.86632 1.47574 1.50715 1.28621 1.05562 1.22016 0.92452 0.86837 1.04965 1.21812 0.96713 0.96709 0.86086 1.20661 0.94356 0.85882 0.94769 0.93113 1.22369 1.01812 0.98379 0.99706 1.42462 1.09513 0.99647 1.84652 1.19192 0.89173 0.88378 1.39333 0.91508 1.24649 0.96691 0.96614 1.02988 1.69612 1.21884 1.11335 1.55789 0.86310 0.82353 0.79956 0.77865 1.21389 1.21760 1.21415 0.91665 0.92455 0.90759 0.90898 0.91279 0.90116 0.90381 0.85075 0.85481 0.85251 0.84846 0.93460 0.89226 0.91096 0.91136 0.90312 0.94341 0.92615 0.93509 0.78372 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.59 37.16 0.32 -1.33 16 2 C -0.11 -1.51 1.92 -91.77 -0.18 -1.69 16 3 H 0.10 1.42 7.39 -51.93 -0.38 1.04 16 4 C -0.09 -1.20 4.01 -26.73 -0.11 -1.31 16 5 C -0.08 -0.90 4.83 -27.88 -0.13 -1.03 16 6 C -0.11 -1.19 5.14 -104.55 -0.54 -1.73 16 7 C -0.09 -0.80 9.67 -39.59 -0.38 -1.18 16 8 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 9 C -0.10 -0.80 10.04 -39.59 -0.40 -1.20 16 10 C -0.15 -1.53 10.03 -39.51 -0.40 -1.92 16 11 C 0.10 1.23 7.24 -39.42 -0.29 0.95 16 12 F -0.13 -1.90 16.66 2.25 0.04 -1.86 16 13 C 0.52 9.18 7.07 -10.98 -0.08 9.10 16 14 O -0.55 -11.45 15.50 5.56 0.09 -11.37 16 15 N -0.59 -10.19 2.73 -181.58 -0.50 -10.68 16 16 C 0.08 1.24 8.42 59.84 0.50 1.74 16 17 C 0.11 1.93 5.05 -4.04 -0.02 1.91 16 18 C 0.15 3.20 3.20 -67.93 -0.22 2.98 16 19 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 20 C -0.16 -3.02 9.49 37.16 0.35 -2.67 16 21 N -0.72 -17.51 4.56 -53.42 -0.24 -17.75 16 22 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.94 -27.15 13.06 55.49 0.72 -26.42 16 26 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.77 4.55 -51.93 -0.24 0.54 16 33 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 36 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 37 H 0.13 0.88 8.04 -52.49 -0.42 0.46 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.05 0.58 6.94 -51.93 -0.36 0.22 16 42 H 0.09 1.63 5.60 -51.93 -0.29 1.34 16 43 H 0.07 1.07 6.02 -51.93 -0.31 0.75 16 44 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 45 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.38 9.44 5.31 -40.82 -0.22 9.22 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -32.38 400.90 -8.95 -41.32 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.88 Total: 8.98 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.20 Total: -5.77 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.02 Total: -54.86 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.38 -8.95 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.794 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds