Wall clock time and date at job start Tue Mar 31 2020 20:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.52992 * 109.47195 * 240.00068 * 2 1 3 5 5 C 1.53001 * 109.47148 * 64.99898 * 4 2 1 6 6 C 1.50700 * 109.46803 * 179.97438 * 5 4 2 7 7 C 1.38225 * 120.00969 * 100.00331 * 6 5 4 8 8 C 1.38224 * 120.02472 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.05271 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02503 * 359.97438 * 9 8 7 11 11 C 1.38441 * 120.01735 * 279.72182 * 6 5 4 12 12 F 1.35098 * 120.02368 * 0.02562 * 11 6 5 13 13 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 14 14 O 1.21279 * 120.00113 * 120.00322 * 13 2 1 15 15 N 1.34784 * 119.99961 * 300.00090 * 13 2 1 16 16 C 1.46493 * 119.99864 * 359.72839 * 15 13 2 17 17 C 1.46494 * 119.99635 * 180.02562 * 15 13 2 18 18 C 1.53002 * 109.47325 * 90.00335 * 17 15 13 19 19 H 1.08996 * 109.46654 * 294.99413 * 18 17 15 20 20 C 1.53001 * 109.47112 * 174.99869 * 18 17 15 21 21 N 1.46500 * 109.47149 * 54.99558 * 18 17 15 22 22 C 1.36934 * 120.00050 * 205.00430 * 21 18 17 23 23 H 1.08006 * 119.99547 * 359.97438 * 22 21 18 24 24 C 1.38811 * 119.99987 * 180.02562 * 22 21 18 25 25 N 1.31618 * 120.00108 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99890 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47146 * 59.99713 * 26 24 22 28 28 H 1.48494 * 109.47142 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47315 * 300.00201 * 26 24 22 30 30 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 33 33 H 1.08999 * 109.47251 * 185.00222 * 4 2 1 34 34 H 1.08999 * 109.47140 * 304.99739 * 4 2 1 35 35 H 1.08998 * 109.47078 * 299.99354 * 5 4 2 36 36 H 1.08999 * 109.47230 * 59.99896 * 5 4 2 37 37 H 1.07996 * 119.98833 * 359.95221 * 7 6 5 38 38 H 1.07999 * 119.97257 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.98868 * 179.97438 * 9 8 7 40 40 H 1.08003 * 120.01403 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.47297 * 90.00011 * 16 15 13 42 42 H 1.09002 * 109.47192 * 209.99937 * 16 15 13 43 43 H 1.08996 * 109.47342 * 329.99648 * 16 15 13 44 44 H 1.09003 * 109.47006 * 210.00121 * 17 15 13 45 45 H 1.09004 * 109.47665 * 329.99813 * 17 15 13 46 46 H 1.08993 * 109.47175 * 59.99828 * 20 18 17 47 47 H 1.09001 * 109.46893 * 180.02562 * 20 18 17 48 48 H 1.09000 * 109.46901 * 299.99827 * 20 18 17 49 49 H 0.96999 * 119.99751 * 25.00309 * 21 18 17 50 50 H 0.96997 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6352 0.0690 -2.4953 6 6 2.1382 -0.6411 -3.7256 7 6 1.2791 -1.4282 -4.4693 8 6 1.7399 -2.0793 -5.5982 9 6 3.0606 -1.9445 -5.9846 10 6 3.9212 -1.1582 -5.2427 11 6 3.4593 -0.5008 -4.1149 12 9 4.2986 0.2724 -3.3917 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2499 2.4546 16 6 0.8694 0.9446 2.5890 17 6 2.1955 -0.9402 3.6507 18 6 3.5431 -0.3472 4.0670 19 1 4.2838 -0.5506 3.2938 20 6 3.9940 -0.9809 5.3846 21 7 3.4059 1.1007 4.2431 22 6 4.4996 1.9135 4.1078 23 1 5.4634 1.4870 3.8716 24 6 4.3698 3.2854 4.2752 25 7 3.1954 3.8049 4.5636 26 14 5.8619 4.3941 4.0913 27 1 6.4193 4.2508 2.7224 28 1 5.4603 5.8058 4.3165 29 1 6.8922 4.0069 5.0882 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 0.5489 0.1471 -2.5390 36 1 2.0698 1.0675 -2.4494 37 1 0.2475 -1.5349 -4.1680 38 1 1.0680 -2.6944 -6.1783 39 1 3.4197 -2.4540 -6.8666 40 1 4.9529 -1.0534 -5.5445 41 1 -0.1799 0.6512 2.6203 42 1 1.1279 1.4679 3.5096 43 1 1.0372 1.6036 1.7372 44 1 1.4775 -0.8151 4.4613 45 1 2.3170 -2.0015 3.4337 46 1 4.0960 -2.0581 5.2535 47 1 4.9538 -0.5580 5.6813 48 1 3.2531 -0.7775 6.1578 49 1 2.5404 1.4836 4.4556 50 1 3.1046 4.7636 4.6802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277938288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:41 Heat of formation + Delta-G solvation = -70.468162 kcal Electronic energy + Delta-G solvation = -29590.753276 eV Core-core repulsion = 25531.731035 eV Total energy + Delta-G solvation = -4059.022241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.90819 -41.25037 -39.99535 -38.07576 -36.66411 -35.84213 -34.08900 -33.08227 -31.44125 -30.72819 -29.35226 -28.02251 -27.30242 -26.04081 -25.45555 -23.71926 -23.24231 -22.00338 -21.43739 -19.94021 -19.29582 -18.54767 -17.96510 -17.44187 -17.31729 -16.73241 -16.69184 -16.49510 -16.38129 -15.84317 -15.61772 -15.19658 -14.97638 -14.89849 -14.46228 -14.26410 -13.96205 -13.92856 -13.82551 -13.65889 -13.57795 -13.30946 -13.18278 -13.03251 -12.80638 -12.73858 -12.67849 -12.52146 -12.43878 -12.28156 -12.24722 -12.00012 -11.88422 -11.66780 -11.62140 -11.57943 -11.00196 -10.61484 -9.87994 -9.57579 -9.52816 -8.95041 -7.93627 -5.18742 0.21199 0.28675 1.44578 1.45529 1.51631 1.68882 2.16627 2.55167 2.66847 3.36159 3.39457 3.54379 3.58559 3.78820 3.87192 3.96739 4.02802 4.09208 4.17181 4.24160 4.33824 4.41014 4.42591 4.46170 4.52111 4.56661 4.60454 4.68436 4.68974 4.74062 4.85754 4.92898 4.95904 4.99165 5.02135 5.06388 5.13913 5.16737 5.23666 5.28586 5.30568 5.38213 5.40668 5.47429 5.50512 5.51472 5.70113 5.99687 6.29572 6.50882 7.24393 7.37257 8.09670 8.39400 9.28583 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.002911 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.856420 B = 9615.753016 C =10673.220724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.080 4.080 5 C -0.075 4.075 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.126 4.126 9 C -0.097 4.097 10 C -0.166 4.166 11 C 0.061 3.939 12 F -0.159 7.159 13 C 0.509 3.491 14 O -0.591 6.591 15 N -0.597 5.597 16 C 0.084 3.916 17 C 0.116 3.884 18 C 0.152 3.848 19 H 0.016 0.984 20 C -0.152 4.152 21 N -0.723 5.723 22 C -0.236 4.236 23 H 0.056 0.944 24 C -0.062 4.062 25 N -0.957 5.957 26 Si 0.959 3.041 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.057 0.943 49 H 0.379 0.621 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -11.483 -19.131 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.109 0.891 4 C -0.118 4.118 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.109 4.109 8 C -0.144 4.144 9 C -0.115 4.115 10 C -0.185 4.185 11 C 0.042 3.958 12 F -0.137 7.137 13 C 0.299 3.701 14 O -0.473 6.473 15 N -0.327 5.327 16 C -0.059 4.059 17 C -0.008 4.008 18 C 0.042 3.958 19 H 0.034 0.966 20 C -0.212 4.212 21 N -0.366 5.366 22 C -0.369 4.369 23 H 0.074 0.926 24 C -0.255 4.255 25 N -0.607 5.607 26 Si 0.789 3.211 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.210 1.210 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.215 0.785 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.829 -11.885 -19.162 25.014 hybrid contribution 1.611 1.316 0.604 2.166 sum -9.218 -10.569 -18.558 23.261 Atomic orbital electron populations 1.22067 0.90059 1.03458 1.04930 1.21287 0.99967 0.99986 0.91346 0.89078 1.21186 0.99592 0.99040 0.92012 1.20606 1.03152 0.97736 0.89700 1.20163 0.92293 1.01325 0.98958 1.21334 1.00480 0.94783 0.94343 1.21643 0.96252 0.99586 0.96870 1.21394 0.93421 0.96903 0.99789 1.21420 1.02252 0.99699 0.95091 1.18146 0.88698 0.95601 0.93341 1.91460 1.71323 1.73471 1.77484 1.21223 0.79185 0.84071 0.85633 1.90611 1.40193 1.29208 1.87247 1.47719 1.50650 1.28905 1.05400 1.22082 0.94252 0.86065 1.03488 1.21728 0.95337 0.96651 0.87081 1.20776 0.95623 0.84447 0.94945 0.96594 1.22210 1.00838 0.99790 0.98379 1.42504 1.08588 1.00881 1.84631 1.19363 0.89710 0.89115 1.38668 0.92617 1.25258 0.98995 0.97661 1.03587 1.69722 1.23077 1.11222 1.56722 0.85442 0.79777 0.78340 0.77552 1.21509 1.21534 1.21033 0.88948 0.91855 0.90306 0.94965 0.91258 0.87061 0.91699 0.82487 0.82175 0.82309 0.84217 0.89409 0.91989 0.91004 0.88773 0.89863 0.91549 0.94660 0.92432 0.78531 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.59 71.98 0.62 -2.13 16 2 C -0.10 -2.87 1.92 -11.54 -0.02 -2.90 16 3 H 0.09 2.66 7.39 -2.39 -0.02 2.64 16 4 C -0.08 -2.18 4.01 30.59 0.12 -2.06 16 5 C -0.07 -1.58 4.83 29.85 0.14 -1.44 16 6 C -0.13 -2.72 5.14 -19.82 -0.10 -2.82 16 7 C -0.09 -1.39 9.67 22.26 0.22 -1.17 16 8 C -0.13 -1.55 10.04 22.27 0.22 -1.33 16 9 C -0.10 -1.35 10.04 22.26 0.22 -1.13 16 10 C -0.17 -3.28 10.03 22.31 0.22 -3.05 16 11 C 0.06 1.55 7.24 22.38 0.16 1.71 16 12 F -0.16 -4.96 16.66 44.97 0.75 -4.21 16 13 C 0.51 18.22 7.07 87.66 0.62 18.84 16 14 O -0.59 -25.38 15.50 -3.03 -0.05 -25.43 16 15 N -0.60 -20.30 2.73 -846.77 -2.31 -22.62 16 16 C 0.08 2.48 8.42 127.77 1.08 3.56 16 17 C 0.12 4.00 5.05 86.38 0.44 4.44 16 18 C 0.15 6.40 3.20 44.99 0.14 6.54 16 19 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 20 C -0.15 -5.60 9.49 71.98 0.68 -4.92 16 21 N -0.72 -35.80 4.56 -322.94 -1.47 -37.27 16 22 C -0.24 -13.34 9.93 84.03 0.83 -12.51 16 23 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 24 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 25 N -0.96 -55.85 13.06 21.65 0.28 -55.57 16 26 Si 0.96 46.89 29.55 68.60 2.03 48.92 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 30 H 0.09 1.23 6.56 -2.39 -0.02 1.22 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.40 4.55 -2.39 -0.01 1.39 16 33 H 0.03 1.11 7.95 -2.39 -0.02 1.10 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 1.61 6.43 -2.39 -0.02 1.59 16 36 H 0.06 1.52 7.94 -2.39 -0.02 1.51 16 37 H 0.16 1.49 8.04 -2.91 -0.02 1.47 16 38 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.09 1.91 6.94 -2.39 -0.02 1.89 16 42 H 0.06 2.23 5.60 -2.39 -0.01 2.22 16 43 H 0.07 2.11 6.02 -2.39 -0.01 2.09 16 44 H 0.09 2.81 8.07 -2.39 -0.02 2.80 16 45 H 0.08 2.82 7.42 -2.38 -0.02 2.81 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.38 19.02 5.31 -92.71 -0.49 18.52 16 50 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.29 400.90 5.74 -67.55 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.45 Total: 32.04 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.07 Total: -3.42 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -3.50 Total: -115.45 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.75 Total: -4.21 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -73.29 5.74 -67.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.917 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds