Wall clock time and date at job start Tue Mar 31 2020 20:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 C 1.52999 * 109.47358 * 240.00050 * 2 1 3 5 5 N 1.46495 * 109.46969 * 184.99505 * 4 2 1 6 6 C 1.46504 * 120.00272 * 270.00030 * 5 4 2 7 7 C 1.34785 * 120.00038 * 90.00324 * 5 4 2 8 8 O 1.21280 * 119.99774 * 4.02068 * 7 5 4 9 9 C 1.50700 * 120.00064 * 184.02463 * 7 5 4 10 10 H 1.09000 * 109.46882 * 314.14569 * 9 7 5 11 11 C 1.53001 * 109.47071 * 74.15001 * 9 7 5 12 12 C 1.53001 * 109.46889 * 194.14673 * 9 7 5 13 13 C 1.52999 * 109.47042 * 174.99865 * 12 9 7 14 14 C 1.50704 * 109.46876 * 179.97438 * 13 12 9 15 15 C 1.38226 * 120.00714 * 100.00449 * 14 13 12 16 16 C 1.38226 * 120.01871 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.05470 * 359.97438 * 16 15 14 18 18 C 1.38180 * 120.02626 * 359.97438 * 17 16 15 19 19 C 1.38429 * 120.01538 * 279.99735 * 14 13 12 20 20 F 1.35101 * 120.02585 * 0.02562 * 19 14 13 21 21 N 1.46498 * 109.47225 * 119.99612 * 2 1 3 22 22 C 1.36937 * 120.00191 * 275.00582 * 21 2 1 23 23 H 1.07991 * 120.00191 * 359.97438 * 22 21 2 24 24 C 1.38815 * 120.00012 * 180.02562 * 22 21 2 25 25 N 1.31622 * 119.99680 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46582 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47110 * 119.99779 * 26 24 22 29 29 H 1.48499 * 109.46961 * 239.99949 * 26 24 22 30 30 H 1.09001 * 109.46840 * 60.00329 * 1 2 3 31 31 H 1.08997 * 109.46553 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47145 * 299.99380 * 1 2 3 33 33 H 1.09004 * 109.46897 * 64.99948 * 4 2 1 34 34 H 1.08990 * 109.47155 * 304.99960 * 4 2 1 35 35 H 1.08998 * 109.47160 * 264.36002 * 6 5 4 36 36 H 1.08994 * 109.47043 * 24.36064 * 6 5 4 37 37 H 1.09000 * 109.46857 * 144.36620 * 6 5 4 38 38 H 1.09000 * 109.46589 * 308.36673 * 11 9 7 39 39 H 1.08995 * 109.47403 * 68.37206 * 11 9 7 40 40 H 1.09003 * 109.46713 * 188.37385 * 11 9 7 41 41 H 1.09004 * 109.47182 * 55.00028 * 12 9 7 42 42 H 1.08997 * 109.47163 * 295.00460 * 12 9 7 43 43 H 1.08999 * 109.46620 * 60.00300 * 13 12 9 44 44 H 1.08998 * 109.46893 * 300.00223 * 13 12 9 45 45 H 1.07990 * 119.99025 * 359.97438 * 15 14 13 46 46 H 1.08000 * 119.97210 * 179.97438 * 16 15 14 47 47 H 1.08005 * 119.98893 * 180.02562 * 17 16 15 48 48 H 1.08005 * 120.01441 * 179.74625 * 18 17 16 49 49 H 0.97006 * 119.99687 * 95.00817 * 21 2 1 50 50 H 0.97005 * 119.99520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3344 0.2343 -1.7612 7 6 4.0759 -1.8985 -0.6115 8 8 3.3878 -2.8104 -0.2045 9 6 5.5748 -1.9642 -0.4698 10 1 6.0418 -1.6702 -1.4098 11 6 6.0241 -1.0142 0.6421 12 6 5.9916 -3.3938 -0.1185 13 6 7.5185 -3.4892 -0.0972 14 6 7.9290 -4.8972 0.2495 15 6 8.3158 -5.7704 -0.7498 16 6 8.6918 -7.0620 -0.4322 17 6 8.6821 -7.4820 0.8851 18 6 8.2969 -6.6105 1.8858 19 6 7.9190 -5.3165 1.5687 20 9 7.5408 -4.4640 2.5462 21 7 2.0184 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8926 1.0405 2.4242 24 6 2.6123 -0.6616 3.5091 25 7 2.9255 -1.9386 3.4499 26 14 2.7913 0.2704 5.1180 27 1 2.3772 1.6828 4.9205 28 1 1.9311 -0.3581 6.1525 29 1 4.2084 0.2277 5.5598 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -0.1582 -2.1370 34 1 1.6055 -1.7197 -1.2952 35 1 4.6256 -0.0387 -2.7755 36 1 3.7712 1.1672 -1.7835 37 1 5.2271 0.3632 -1.1492 38 1 5.6011 -0.0249 0.4676 39 1 5.6794 -1.3923 1.6045 40 1 7.1122 -0.9485 0.6462 41 1 5.5950 -4.0818 -0.8652 42 1 5.5973 -3.6564 0.8631 43 1 7.9150 -2.8013 0.6495 44 1 7.9127 -3.2266 -1.0789 45 1 8.3233 -5.4436 -1.7791 46 1 8.9935 -7.7438 -1.2136 47 1 8.9766 -8.4913 1.1321 48 1 8.2854 -6.9399 2.9143 49 1 2.2492 -1.6317 1.1526 50 1 3.2495 -2.3957 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:47 Heat of formation + Delta-G solvation = -54.467918 kcal Electronic energy + Delta-G solvation = -30362.164797 eV Core-core repulsion = 26303.836379 eV Total energy + Delta-G solvation = -4058.328418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.71150 -39.70088 -39.06385 -36.24380 -35.14120 -34.26367 -32.34499 -31.64140 -30.55846 -28.65963 -28.10353 -26.85321 -25.75705 -24.62960 -23.52087 -22.80088 -22.07251 -20.72225 -19.68040 -18.42588 -17.52959 -17.11537 -16.54961 -16.37323 -15.94487 -15.47890 -15.38816 -14.97900 -14.59798 -14.48275 -14.19813 -13.69202 -13.62631 -13.27531 -13.12810 -12.95638 -12.87443 -12.61680 -12.42187 -12.16541 -12.05207 -11.92166 -11.89517 -11.65971 -11.41323 -11.30553 -11.19016 -11.05399 -10.98428 -10.77084 -10.57784 -10.44661 -10.34191 -10.27032 -9.92131 -9.47968 -9.04939 -8.93801 -8.76089 -8.60588 -7.96783 -6.74526 -5.55500 -2.85091 1.12330 1.14567 3.33567 3.49723 3.51016 3.55329 3.58152 3.65184 4.31141 4.59162 4.70568 4.71389 4.84385 4.94617 5.08433 5.18890 5.30863 5.34885 5.41000 5.48901 5.54795 5.58926 5.66991 5.70327 5.72383 5.81045 5.85005 5.88682 5.91926 6.01405 6.09231 6.09807 6.13041 6.20447 6.24355 6.29310 6.35072 6.35703 6.47045 6.47594 6.70475 6.74424 6.86689 6.88715 6.90401 7.05442 7.24247 7.83614 7.99978 8.60508 8.93506 9.73078 10.36169 10.74633 11.64426 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.003742 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.744032 B = 7481.096937 C = 9092.105728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 H 0.041 0.959 4 C 0.109 3.891 5 N -0.611 5.611 6 C 0.079 3.921 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.099 4.099 10 H 0.080 0.920 11 C -0.142 4.142 12 C -0.094 4.094 13 C -0.081 4.081 14 C -0.109 4.109 15 C -0.092 4.092 16 C -0.134 4.134 17 C -0.100 4.100 18 C -0.155 4.155 19 C 0.106 3.894 20 F -0.129 7.129 21 N -0.720 5.720 22 C -0.238 4.238 23 H 0.064 0.936 24 C -0.010 4.010 25 N -0.917 5.917 26 Si 0.894 3.106 27 H -0.283 1.283 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.397 0.603 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.811 -4.408 -13.530 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.014 4.014 5 N -0.345 5.345 6 C -0.065 4.065 7 C 0.317 3.683 8 O -0.394 6.394 9 C -0.121 4.121 10 H 0.098 0.902 11 C -0.200 4.200 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.152 4.152 17 C -0.118 4.118 18 C -0.174 4.174 19 C 0.087 3.913 20 F -0.108 7.108 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.082 0.918 24 C -0.206 4.206 25 N -0.565 5.565 26 Si 0.726 3.274 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.236 0.764 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.445 -4.769 -13.135 18.712 hybrid contribution -0.009 0.527 1.237 1.345 sum 12.436 -4.242 -11.898 17.726 Atomic orbital electron populations 1.22415 0.99293 1.00916 0.99820 1.20630 0.91890 0.95481 0.87692 0.94053 1.21807 0.79675 1.01948 0.97980 1.47564 1.06439 1.21188 1.59264 1.21806 0.96163 0.91037 0.97506 1.20317 0.90038 0.81517 0.76436 1.90685 1.64630 1.37526 1.46550 1.21186 0.92924 0.97705 1.00253 0.90181 1.21813 0.99972 0.98833 0.99338 1.21370 0.92819 0.94834 1.04120 1.20647 0.97059 0.91746 1.02353 1.20028 1.01255 0.98022 0.91696 1.20950 0.98124 0.93132 0.98768 1.21156 1.01265 0.96200 0.96553 1.20961 0.99050 0.99337 0.92465 1.21187 1.02599 0.92491 1.01089 1.17653 0.99928 0.88422 0.85320 1.91567 1.88526 1.69620 1.61063 1.42661 1.77606 1.11654 1.04604 1.19201 1.36519 0.93554 0.87666 0.91842 1.24692 1.02611 0.95838 0.97478 1.69747 1.50378 1.08223 1.28106 0.86312 0.77224 0.78790 0.85064 1.20848 1.22098 1.22068 0.94714 0.93424 0.92715 0.91426 0.90383 0.93587 0.91368 0.90905 0.91862 0.90289 0.92637 0.91762 0.89908 0.90220 0.90789 0.85223 0.85620 0.85358 0.84863 0.76449 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.49 37.16 0.35 -2.74 16 2 C 0.15 3.20 3.20 -67.93 -0.22 2.98 16 3 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 4 C 0.11 1.92 5.12 -4.05 -0.02 1.90 16 5 N -0.61 -10.44 2.77 -181.58 -0.50 -10.94 16 6 C 0.08 0.98 9.75 59.85 0.58 1.57 16 7 C 0.53 10.34 6.07 -10.98 -0.07 10.27 16 8 O -0.52 -12.52 13.63 5.56 0.08 -12.45 16 9 C -0.10 -1.57 1.89 -91.77 -0.17 -1.74 16 10 H 0.08 0.99 7.46 -51.93 -0.39 0.60 16 11 C -0.14 -2.37 8.34 37.16 0.31 -2.06 16 12 C -0.09 -1.50 3.97 -26.73 -0.11 -1.60 16 13 C -0.08 -1.03 4.83 -27.88 -0.13 -1.16 16 14 C -0.11 -1.41 5.14 -104.55 -0.54 -1.95 16 15 C -0.09 -0.96 9.67 -39.59 -0.38 -1.35 16 16 C -0.13 -1.26 10.04 -39.58 -0.40 -1.65 16 17 C -0.10 -0.98 10.04 -39.59 -0.40 -1.38 16 18 C -0.15 -1.85 10.03 -39.51 -0.40 -2.25 16 19 C 0.11 1.52 7.24 -39.42 -0.29 1.24 16 20 F -0.13 -2.21 16.66 2.25 0.04 -2.17 16 21 N -0.72 -18.90 4.52 -53.43 -0.24 -19.14 16 22 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 23 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.92 -28.81 13.06 55.49 0.72 -28.09 16 26 Si 0.89 23.11 29.55 -169.99 -5.02 18.09 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 29 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.08 1.51 7.37 -51.93 -0.38 1.13 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.07 0.89 4.77 -51.93 -0.25 0.64 16 38 H 0.06 1.06 6.04 -51.93 -0.31 0.75 16 39 H 0.08 1.69 8.12 -51.93 -0.42 1.27 16 40 H 0.05 0.75 6.99 -51.93 -0.36 0.39 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.67 8.08 -51.93 -0.42 1.25 16 43 H 0.08 1.05 6.56 -51.93 -0.34 0.71 16 44 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 45 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 48 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 49 H 0.40 11.46 5.20 -40.82 -0.21 11.25 16 50 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -35.13 403.63 -9.07 -44.20 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -8.11 Total: 11.67 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.11 Total: -7.25 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.02 Total: -58.18 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.13 -9.07 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.265 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds