Wall clock time and date at job start Tue Mar 31 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 C 1.52999 * 109.47358 * 240.00050 * 2 1 3 5 5 N 1.46495 * 109.46969 * 184.99505 * 4 2 1 6 6 C 1.46504 * 120.00272 * 270.00030 * 5 4 2 7 7 C 1.34785 * 120.00038 * 90.00324 * 5 4 2 8 8 O 1.21280 * 119.99774 * 4.02068 * 7 5 4 9 9 C 1.50700 * 120.00064 * 184.02463 * 7 5 4 10 10 H 1.09000 * 109.46882 * 314.14569 * 9 7 5 11 11 C 1.53001 * 109.47071 * 74.15001 * 9 7 5 12 12 C 1.53001 * 109.46889 * 194.14673 * 9 7 5 13 13 C 1.52999 * 109.47042 * 174.99865 * 12 9 7 14 14 C 1.50704 * 109.46876 * 179.97438 * 13 12 9 15 15 C 1.38226 * 120.00714 * 100.00449 * 14 13 12 16 16 C 1.38226 * 120.01871 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.05470 * 359.97438 * 16 15 14 18 18 C 1.38180 * 120.02626 * 359.97438 * 17 16 15 19 19 C 1.38429 * 120.01538 * 279.99735 * 14 13 12 20 20 F 1.35101 * 120.02585 * 0.02562 * 19 14 13 21 21 N 1.46498 * 109.47225 * 119.99612 * 2 1 3 22 22 C 1.36937 * 120.00191 * 275.00582 * 21 2 1 23 23 H 1.07991 * 120.00191 * 359.97438 * 22 21 2 24 24 C 1.38815 * 120.00012 * 180.02562 * 22 21 2 25 25 N 1.31622 * 119.99680 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46582 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47110 * 119.99779 * 26 24 22 29 29 H 1.48499 * 109.46961 * 239.99949 * 26 24 22 30 30 H 1.09001 * 109.46840 * 60.00329 * 1 2 3 31 31 H 1.08997 * 109.46553 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47145 * 299.99380 * 1 2 3 33 33 H 1.09004 * 109.46897 * 64.99948 * 4 2 1 34 34 H 1.08990 * 109.47155 * 304.99960 * 4 2 1 35 35 H 1.08998 * 109.47160 * 264.36002 * 6 5 4 36 36 H 1.08994 * 109.47043 * 24.36064 * 6 5 4 37 37 H 1.09000 * 109.46857 * 144.36620 * 6 5 4 38 38 H 1.09000 * 109.46589 * 308.36673 * 11 9 7 39 39 H 1.08995 * 109.47403 * 68.37206 * 11 9 7 40 40 H 1.09003 * 109.46713 * 188.37385 * 11 9 7 41 41 H 1.09004 * 109.47182 * 55.00028 * 12 9 7 42 42 H 1.08997 * 109.47163 * 295.00460 * 12 9 7 43 43 H 1.08999 * 109.46620 * 60.00300 * 13 12 9 44 44 H 1.08998 * 109.46893 * 300.00223 * 13 12 9 45 45 H 1.07990 * 119.99025 * 359.97438 * 15 14 13 46 46 H 1.08000 * 119.97210 * 179.97438 * 16 15 14 47 47 H 1.08005 * 119.98893 * 180.02562 * 17 16 15 48 48 H 1.08005 * 120.01441 * 179.74625 * 18 17 16 49 49 H 0.97006 * 119.99687 * 95.00817 * 21 2 1 50 50 H 0.97005 * 119.99520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3344 0.2343 -1.7612 7 6 4.0759 -1.8985 -0.6115 8 8 3.3878 -2.8104 -0.2045 9 6 5.5748 -1.9642 -0.4698 10 1 6.0418 -1.6702 -1.4098 11 6 6.0241 -1.0142 0.6421 12 6 5.9916 -3.3938 -0.1185 13 6 7.5185 -3.4892 -0.0972 14 6 7.9290 -4.8972 0.2495 15 6 8.3158 -5.7704 -0.7498 16 6 8.6918 -7.0620 -0.4322 17 6 8.6821 -7.4820 0.8851 18 6 8.2969 -6.6105 1.8858 19 6 7.9190 -5.3165 1.5687 20 9 7.5408 -4.4640 2.5462 21 7 2.0184 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8926 1.0405 2.4242 24 6 2.6123 -0.6616 3.5091 25 7 2.9255 -1.9386 3.4499 26 14 2.7913 0.2704 5.1180 27 1 2.3772 1.6828 4.9205 28 1 1.9311 -0.3581 6.1525 29 1 4.2084 0.2277 5.5598 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -0.1582 -2.1370 34 1 1.6055 -1.7197 -1.2952 35 1 4.6256 -0.0387 -2.7755 36 1 3.7712 1.1672 -1.7835 37 1 5.2271 0.3632 -1.1492 38 1 5.6011 -0.0249 0.4676 39 1 5.6794 -1.3923 1.6045 40 1 7.1122 -0.9485 0.6462 41 1 5.5950 -4.0818 -0.8652 42 1 5.5973 -3.6564 0.8631 43 1 7.9150 -2.8013 0.6495 44 1 7.9127 -3.2266 -1.0789 45 1 8.3233 -5.4436 -1.7791 46 1 8.9935 -7.7438 -1.2136 47 1 8.9766 -8.4913 1.1321 48 1 8.2854 -6.9399 2.9143 49 1 2.2492 -1.6317 1.1526 50 1 3.2495 -2.3957 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277938289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:46 Heat of formation + Delta-G solvation = -75.736609 kcal Electronic energy + Delta-G solvation = -30363.087077 eV Core-core repulsion = 26303.836379 eV Total energy + Delta-G solvation = -4059.250698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.88017 -41.10812 -39.97450 -37.79265 -36.50772 -35.89499 -33.98009 -33.08438 -31.42071 -30.56889 -29.30239 -28.07171 -27.14261 -25.86804 -25.60024 -23.68387 -23.25567 -21.88832 -21.25470 -19.86387 -19.15374 -18.50035 -17.91141 -17.41513 -17.21431 -16.75197 -16.56636 -16.40486 -16.37906 -15.71201 -15.53876 -15.24990 -15.01667 -14.48614 -14.41013 -14.25226 -14.02260 -13.96238 -13.67552 -13.58146 -13.47718 -13.25147 -13.13671 -12.99892 -12.87483 -12.71739 -12.69254 -12.50118 -12.41605 -12.26601 -12.13274 -12.05473 -11.79851 -11.63748 -11.60291 -11.53832 -10.95628 -10.46006 -9.86664 -9.55495 -9.37359 -8.88872 -7.83150 -5.12097 0.22758 0.29483 1.40705 1.41885 1.51575 1.87179 2.31850 2.57064 2.68008 3.39869 3.46694 3.62577 3.67099 3.81299 3.94404 4.01363 4.10226 4.15750 4.21215 4.34409 4.39329 4.42186 4.45671 4.51058 4.54475 4.57035 4.64419 4.70927 4.73474 4.81438 4.88032 4.89725 4.95266 4.98839 5.06483 5.08219 5.11207 5.15913 5.27709 5.30328 5.39102 5.43630 5.48590 5.49138 5.51997 5.55457 5.83882 6.01252 6.33799 6.64344 7.40586 7.51163 8.28116 8.50385 9.37596 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.003742 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.744032 B = 7481.096937 C = 9092.105728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.048 0.952 4 C 0.114 3.886 5 N -0.611 5.611 6 C 0.069 3.931 7 C 0.514 3.486 8 O -0.579 6.579 9 C -0.091 4.091 10 H 0.132 0.868 11 C -0.130 4.130 12 C -0.082 4.082 13 C -0.071 4.071 14 C -0.127 4.127 15 C -0.091 4.091 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.169 4.169 19 C 0.059 3.941 20 F -0.160 7.160 21 N -0.736 5.736 22 C -0.230 4.230 23 H 0.071 0.929 24 C -0.073 4.073 25 N -0.957 5.957 26 Si 0.958 3.042 27 H -0.263 1.263 28 H -0.300 1.300 29 H -0.298 1.298 30 H 0.081 0.919 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.118 0.882 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.021 0.979 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.161 0.839 46 H 0.163 0.837 47 H 0.160 0.840 48 H 0.136 0.864 49 H 0.382 0.618 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 -3.178 -17.254 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.066 0.934 4 C -0.010 4.010 5 N -0.343 5.343 6 C -0.073 4.073 7 C 0.304 3.696 8 O -0.458 6.458 9 C -0.112 4.112 10 H 0.149 0.851 11 C -0.187 4.187 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.188 4.188 19 C 0.040 3.960 20 F -0.139 7.139 21 N -0.379 5.379 22 C -0.362 4.362 23 H 0.088 0.912 24 C -0.266 4.266 25 N -0.608 5.608 26 Si 0.789 3.211 27 H -0.187 1.187 28 H -0.228 1.228 29 H -0.226 1.226 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.133 0.867 45 H 0.178 0.822 46 H 0.181 0.819 47 H 0.178 0.822 48 H 0.154 0.846 49 H 0.218 0.782 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 13.994 -3.448 -16.916 22.223 hybrid contribution -0.537 0.135 2.277 2.344 sum 13.458 -3.313 -14.638 20.158 Atomic orbital electron populations 1.22259 0.97719 1.00347 1.01121 1.20976 0.92937 0.95541 0.87039 0.93359 1.21759 0.80152 1.00885 0.98165 1.47731 1.06736 1.21475 1.58327 1.22147 0.95749 0.90215 0.99155 1.21058 0.91461 0.81428 0.75667 1.90656 1.66120 1.39984 1.49073 1.21228 0.90831 0.97208 1.01950 0.85057 1.21689 1.02037 0.98518 0.96495 1.21190 0.95284 0.95058 1.00482 1.20586 0.94159 0.91941 1.04151 1.20204 1.02249 0.98713 0.91630 1.21351 0.96887 0.93172 0.99446 1.21651 0.99268 0.96246 0.97172 1.21388 0.97631 1.00185 0.92272 1.21422 1.03002 0.92081 1.02286 1.18234 1.02538 0.89388 0.85819 1.91480 1.89317 1.70732 1.62389 1.42917 1.77936 1.11229 1.05854 1.19566 1.34335 0.93748 0.88578 0.91156 1.25444 1.03658 0.96597 1.00892 1.69961 1.52473 1.10114 1.28261 0.85285 0.76528 0.78439 0.80888 1.18722 1.22759 1.22554 0.90067 0.94943 0.94650 0.86392 0.92897 0.89834 0.89894 0.90626 0.91770 0.96497 0.89146 0.91980 0.95982 0.91370 0.86690 0.82179 0.81900 0.82228 0.84563 0.78207 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 9.49 71.98 0.68 -4.96 16 2 C 0.14 5.86 3.20 44.99 0.14 6.01 16 3 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 4 C 0.11 3.83 5.12 86.38 0.44 4.27 16 5 N -0.61 -19.97 2.77 -846.77 -2.35 -22.32 16 6 C 0.07 1.46 9.75 127.77 1.25 2.71 16 7 C 0.51 20.49 6.07 87.66 0.53 21.02 16 8 O -0.58 -29.80 13.63 -3.03 -0.04 -29.84 16 9 C -0.09 -2.86 1.89 -11.54 -0.02 -2.89 16 10 H 0.13 2.77 7.46 -2.39 -0.02 2.76 16 11 C -0.13 -4.45 8.34 71.98 0.60 -3.85 16 12 C -0.08 -2.76 3.97 30.59 0.12 -2.63 16 13 C -0.07 -1.79 4.83 29.85 0.14 -1.65 16 14 C -0.13 -3.31 5.14 -19.82 -0.10 -3.41 16 15 C -0.09 -1.69 9.67 22.26 0.22 -1.47 16 16 C -0.13 -1.97 10.04 22.27 0.22 -1.75 16 17 C -0.10 -1.73 10.04 22.26 0.22 -1.51 16 18 C -0.17 -4.22 10.03 22.31 0.22 -3.99 16 19 C 0.06 1.84 7.24 22.37 0.16 2.00 16 20 F -0.16 -6.21 16.66 44.97 0.75 -5.46 16 21 N -0.74 -39.78 4.52 -322.94 -1.46 -41.24 16 22 C -0.23 -13.45 9.93 84.03 0.83 -12.62 16 23 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -4.50 5.50 84.86 0.47 -4.03 16 25 N -0.96 -64.17 13.06 21.65 0.28 -63.89 16 26 Si 0.96 49.34 29.55 68.60 2.03 51.36 16 27 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 29 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 2.77 8.07 -2.38 -0.02 2.75 16 34 H 0.05 2.06 7.37 -2.39 -0.02 2.05 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.54 8.03 -2.39 -0.02 1.52 16 37 H 0.08 1.58 4.77 -2.39 -0.01 1.57 16 38 H 0.06 2.14 6.04 -2.39 -0.01 2.12 16 39 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 40 H 0.09 2.39 6.99 -2.39 -0.02 2.38 16 41 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 43 H 0.07 1.85 6.56 -2.39 -0.02 1.83 16 44 H 0.11 1.91 8.01 -2.39 -0.02 1.89 16 45 H 0.16 1.94 8.04 -2.92 -0.02 1.92 16 46 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 48 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 49 H 0.38 23.28 5.20 -92.70 -0.48 22.80 16 50 H 0.24 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -86.91 403.63 5.79 -81.12 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.45 Total: 39.03 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.14 Total: -8.76 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -3.53 Total: -127.46 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.75 Total: -5.46 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.36 kcal Total: -86.91 5.79 -81.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.382 kcal (2) G-P(sol) polarization free energy of solvation -86.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds