Wall clock time and date at job start Tue Mar 31 2020 19:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47085 * 2 1 4 4 C 1.50699 * 109.47401 * 120.00689 * 2 1 3 5 5 O 1.21278 * 120.00227 * 120.00071 * 4 2 1 6 6 N 1.34781 * 119.99796 * 299.99741 * 4 2 1 7 7 C 1.46491 * 120.00176 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47490 * 176.56569 * 7 6 4 9 9 N 1.46494 * 109.53904 * 54.54271 * 8 7 6 10 10 C 1.36937 * 120.00069 * 62.02627 * 9 8 7 11 11 H 1.07993 * 119.99908 * 354.00564 * 10 9 8 12 12 C 1.38819 * 119.99877 * 174.00911 * 10 9 8 13 13 N 1.31618 * 119.99974 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99798 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47219 * 89.99920 * 14 12 10 16 16 H 1.48501 * 109.46819 * 209.99845 * 14 12 10 17 17 H 1.48501 * 109.47274 * 329.99667 * 14 12 10 18 18 C 1.53182 * 109.54138 * 294.36649 * 8 7 6 19 19 C 1.53105 * 109.15387 * 183.23674 * 18 8 7 20 20 O 1.42905 * 109.48471 * 57.47882 * 19 18 8 21 21 C 1.42899 * 114.09707 * 298.88520 * 20 19 18 22 22 C 1.53091 * 109.41591 * 61.16018 * 21 20 19 23 23 C 1.50700 * 109.46508 * 240.00500 * 2 1 3 24 24 C 1.39873 * 126.04278 * 299.68543 * 23 2 1 25 25 N 1.30834 * 108.20315 * 179.82035 * 24 23 2 26 26 N 1.40085 * 108.20645 * 0.44470 * 25 24 23 27 27 C 1.46497 * 126.03837 * 179.73867 * 26 25 24 28 28 C 1.34950 * 107.92135 * 359.71526 * 26 25 24 29 29 H 1.09002 * 109.46669 * 299.99462 * 1 2 3 30 30 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47850 * 59.99610 * 1 2 3 32 32 H 0.97002 * 119.99746 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47385 * 296.56718 * 7 6 4 34 34 H 1.09001 * 109.47081 * 56.56280 * 7 6 4 35 35 H 0.97005 * 120.00055 * 242.02122 * 9 8 7 36 36 H 0.96999 * 119.99662 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.52124 * 303.06005 * 18 8 7 38 38 H 1.09004 * 109.51634 * 63.24569 * 18 8 7 39 39 H 1.08996 * 109.40845 * 297.49236 * 19 18 8 40 40 H 1.08997 * 109.48913 * 177.50765 * 19 18 8 41 41 H 1.09000 * 109.48403 * 301.17705 * 21 20 19 42 42 H 1.08996 * 109.48959 * 181.15202 * 21 20 19 43 43 H 1.09000 * 109.52459 * 182.48495 * 22 21 20 44 44 H 1.08996 * 109.57530 * 62.33105 * 22 21 20 45 45 H 1.08003 * 125.89123 * 0.02562 * 24 23 2 46 46 H 1.08999 * 109.47085 * 269.97272 * 27 26 25 47 47 H 1.09004 * 109.46880 * 29.97086 * 27 26 25 48 48 H 1.09000 * 109.47104 * 149.96987 * 27 26 25 49 49 H 1.08003 * 126.11858 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1190 6 7 1.7069 -0.2502 2.4545 7 6 2.1957 -0.9405 3.6506 8 6 1.7574 -0.1712 4.8984 9 7 0.3044 0.0143 4.8745 10 6 -0.5252 -1.0750 4.8926 11 1 -0.1112 -2.0702 4.8268 12 6 -1.8985 -0.8999 4.9956 13 7 -2.4030 0.3131 5.0763 14 14 -3.0303 -2.3857 5.0195 15 1 -3.2322 -2.8316 6.4215 16 1 -4.3401 -2.0199 4.4229 17 1 -2.4184 -3.4868 4.2331 18 6 2.4481 1.1958 4.9266 19 6 2.0669 1.9247 6.2179 20 8 2.4344 1.1244 7.3433 21 6 1.7816 -0.1457 7.3941 22 6 2.1530 -0.9588 6.1512 23 6 2.0322 -0.7103 -1.2306 24 6 1.7784 -2.0425 -1.5731 25 7 2.3773 -2.2938 -2.7088 26 7 3.0407 -1.1307 -3.1204 27 6 3.8397 -0.9797 -4.3390 28 6 2.8134 -0.1738 -2.1964 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.1489 0.5383 2.5436 33 1 1.7834 -1.9490 3.6821 34 1 3.2839 -0.9937 3.6201 35 1 -0.0699 0.9087 4.8460 36 1 -3.3625 0.4355 5.1479 37 1 3.5289 1.0585 4.8926 38 1 2.1274 1.7836 4.0665 39 1 0.9910 2.0989 6.2314 40 1 2.5904 2.8797 6.2645 41 1 0.7019 0.0012 7.4230 42 1 2.0994 -0.6825 8.2879 43 1 1.6215 -1.9103 6.1662 44 1 3.2274 -1.1419 6.1423 45 1 1.1870 -2.7418 -1.0006 46 1 4.8772 -1.2387 -4.1277 47 1 3.4505 -1.6412 -5.1130 48 1 3.7859 0.0532 -4.6831 49 1 3.1875 0.8390 -2.2234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278734506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:25 Heat of formation + Delta-G solvation = 5.407502 kcal Electronic energy + Delta-G solvation = -30405.280792 eV Core-core repulsion = 26369.468729 eV Total energy + Delta-G solvation = -4035.812064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23153 -39.61854 -38.69504 -35.80356 -34.25736 -33.42485 -32.58968 -31.98091 -30.62588 -29.41503 -29.16667 -26.86424 -26.43828 -24.19659 -23.92477 -22.98386 -22.04190 -21.09005 -20.55755 -19.37532 -18.57450 -17.32353 -16.97544 -16.35597 -15.60571 -15.59511 -15.38988 -15.35898 -14.96406 -14.51641 -14.31823 -14.22940 -13.96134 -13.69875 -13.56205 -13.14871 -12.93475 -12.89244 -12.64896 -12.55647 -12.24844 -12.10070 -11.88319 -11.72280 -11.55926 -11.38829 -11.28717 -10.92759 -10.87996 -10.77216 -10.42185 -10.34394 -10.02168 -9.74366 -9.69242 -9.39303 -9.21876 -9.19829 -8.77774 -8.37633 -8.30813 -7.09933 -5.87334 -3.17532 1.92032 2.53547 2.88788 3.16111 3.38101 3.45522 3.46464 3.86351 4.39840 4.44547 4.51702 4.77974 4.95059 4.99752 5.08700 5.18324 5.18743 5.27145 5.31878 5.38143 5.41895 5.53385 5.57793 5.58812 5.67000 5.79946 5.80023 5.87482 6.02522 6.07471 6.10933 6.13376 6.18583 6.27445 6.34190 6.42963 6.44362 6.57680 6.59556 6.73664 6.75706 6.81300 7.01246 7.09877 7.65515 7.73661 7.76671 8.13673 8.30028 8.79618 9.42878 9.93149 10.30115 11.34314 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003468 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.147162 B = 8071.718713 C = 9551.489446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 H 0.095 0.905 4 C 0.513 3.487 5 O -0.549 6.549 6 N -0.701 5.701 7 C 0.119 3.881 8 C 0.190 3.810 9 N -0.712 5.712 10 C -0.234 4.234 11 H 0.070 0.930 12 C -0.005 4.005 13 N -0.930 5.930 14 Si 0.900 3.100 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.150 4.150 19 C 0.066 3.934 20 O -0.394 6.394 21 C 0.070 3.930 22 C -0.153 4.153 23 C -0.207 4.207 24 C 0.084 3.916 25 N -0.305 5.305 26 N -0.384 5.384 27 C 0.106 3.894 28 C 0.053 3.947 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.179 0.821 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 4.881 -11.148 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 H 0.113 0.887 4 C 0.298 3.702 5 O -0.427 6.427 6 N -0.352 5.352 7 C -0.007 4.007 8 C 0.098 3.902 9 N -0.354 5.354 10 C -0.365 4.365 11 H 0.088 0.912 12 C -0.201 4.201 13 N -0.577 5.577 14 Si 0.731 3.269 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.208 1.208 18 C -0.188 4.188 19 C -0.011 4.011 20 O -0.313 6.313 21 C -0.007 4.007 22 C -0.193 4.193 23 C -0.218 4.218 24 C -0.102 4.102 25 N -0.126 5.126 26 N -0.166 5.166 27 C -0.036 4.036 28 C -0.092 4.092 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.196 0.804 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.350 3.219 -12.112 16.908 hybrid contribution -1.434 0.270 0.461 1.530 sum 9.916 3.490 -11.651 15.692 Atomic orbital electron populations 1.21752 0.92055 1.03172 1.02647 1.19514 0.97261 0.98865 0.89599 0.88728 1.20458 0.80386 0.84817 0.84563 1.90657 1.38623 1.26498 1.86892 1.45749 1.52487 1.31995 1.04969 1.21758 0.96891 0.97013 0.85037 1.19825 0.86344 0.92303 0.91771 1.42474 0.97929 1.06799 1.88241 1.19052 0.87611 0.87409 1.42429 0.91241 1.24671 0.96788 0.96142 1.02518 1.69639 1.11741 1.19348 1.57018 0.86307 0.80638 0.82371 0.77597 1.21775 1.21866 1.20751 1.22345 1.00567 0.97333 0.98592 1.22460 1.00308 0.93055 0.85298 1.87793 1.68485 1.29412 1.45581 1.22448 0.98196 0.83203 0.96803 1.22453 0.99868 1.00546 0.96419 1.19510 1.07963 0.95394 0.98975 1.23643 0.97963 0.95739 0.92864 1.77344 1.13962 1.05676 1.15657 1.48340 1.40655 1.08504 1.19101 1.21767 0.94583 1.03186 0.84074 1.22188 1.00210 0.95650 0.91195 0.91087 0.91999 0.91984 0.76256 0.91869 0.93018 0.78103 0.93503 0.91341 0.91260 0.92205 0.90151 0.91226 0.90458 0.90480 0.92723 0.80434 0.91062 0.89553 0.89769 0.81228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.98 37.16 0.33 -1.46 16 2 C -0.03 -0.39 3.09 -92.92 -0.29 -0.68 16 3 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 4 C 0.51 8.53 7.11 -10.98 -0.08 8.45 16 5 O -0.55 -11.08 15.36 5.56 0.09 -11.00 16 6 N -0.70 -11.45 5.02 -60.30 -0.30 -11.76 16 7 C 0.12 2.10 4.36 -4.05 -0.02 2.08 16 8 C 0.19 3.27 0.41 -131.64 -0.05 3.22 16 9 N -0.71 -14.76 3.60 -47.06 -0.17 -14.92 16 10 C -0.23 -5.65 8.67 -15.06 -0.13 -5.79 16 11 H 0.07 1.72 6.78 -52.49 -0.36 1.36 16 12 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 13 N -0.93 -25.32 13.07 55.49 0.73 -24.59 16 14 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.15 -2.23 4.80 -26.58 -0.13 -2.36 16 19 C 0.07 1.02 6.67 37.21 0.25 1.27 16 20 O -0.39 -6.81 10.77 -35.23 -0.38 -7.19 16 21 C 0.07 1.21 6.68 37.20 0.25 1.46 16 22 C -0.15 -2.62 4.79 -26.59 -0.13 -2.74 16 23 C -0.21 -2.86 4.37 -105.05 -0.46 -3.32 16 24 C 0.08 1.30 10.76 -17.36 -0.19 1.12 16 25 N -0.31 -4.70 12.58 30.63 0.39 -4.32 16 26 N -0.38 -4.67 4.01 -68.16 -0.27 -4.95 16 27 C 0.11 0.76 11.47 59.85 0.69 1.44 16 28 C 0.05 0.62 11.38 -17.22 -0.20 0.42 16 29 H 0.07 0.96 7.56 -51.93 -0.39 0.57 16 30 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 6.27 6.84 -40.82 -0.28 5.99 16 33 H 0.06 1.28 7.47 -51.93 -0.39 0.89 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.38 8.54 6.82 -40.82 -0.28 8.26 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.95 7.40 -51.93 -0.38 0.57 16 39 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.41 7.20 -51.93 -0.37 1.04 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.18 2.71 8.06 -52.48 -0.42 2.28 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -31.62 393.13 -7.12 -38.74 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -7.85 Total: 14.90 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.24 Total: 2.90 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.36 Total: -60.54 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.29 Total: -18.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.62 -7.12 -38.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278734506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.149 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds