Wall clock time and date at job start Tue Mar 31 2020 19:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47085 * 2 1 4 4 C 1.50699 * 109.47401 * 120.00689 * 2 1 3 5 5 O 1.21278 * 120.00227 * 120.00071 * 4 2 1 6 6 N 1.34781 * 119.99796 * 299.99741 * 4 2 1 7 7 C 1.46491 * 120.00176 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47490 * 176.56569 * 7 6 4 9 9 N 1.46494 * 109.53904 * 54.54271 * 8 7 6 10 10 C 1.36937 * 120.00069 * 62.02627 * 9 8 7 11 11 H 1.07993 * 119.99908 * 354.00564 * 10 9 8 12 12 C 1.38819 * 119.99877 * 174.00911 * 10 9 8 13 13 N 1.31618 * 119.99974 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99798 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47219 * 89.99920 * 14 12 10 16 16 H 1.48501 * 109.46819 * 209.99845 * 14 12 10 17 17 H 1.48501 * 109.47274 * 329.99667 * 14 12 10 18 18 C 1.53182 * 109.54138 * 294.36649 * 8 7 6 19 19 C 1.53105 * 109.15387 * 183.23674 * 18 8 7 20 20 O 1.42905 * 109.48471 * 57.47882 * 19 18 8 21 21 C 1.42899 * 114.09707 * 298.88520 * 20 19 18 22 22 C 1.53091 * 109.41591 * 61.16018 * 21 20 19 23 23 C 1.50700 * 109.46508 * 240.00500 * 2 1 3 24 24 C 1.39873 * 126.04278 * 299.68543 * 23 2 1 25 25 N 1.30834 * 108.20315 * 179.82035 * 24 23 2 26 26 N 1.40085 * 108.20645 * 0.44470 * 25 24 23 27 27 C 1.46497 * 126.03837 * 179.73867 * 26 25 24 28 28 C 1.34950 * 107.92135 * 359.71526 * 26 25 24 29 29 H 1.09002 * 109.46669 * 299.99462 * 1 2 3 30 30 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47850 * 59.99610 * 1 2 3 32 32 H 0.97002 * 119.99746 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47385 * 296.56718 * 7 6 4 34 34 H 1.09001 * 109.47081 * 56.56280 * 7 6 4 35 35 H 0.97005 * 120.00055 * 242.02122 * 9 8 7 36 36 H 0.96999 * 119.99662 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.52124 * 303.06005 * 18 8 7 38 38 H 1.09004 * 109.51634 * 63.24569 * 18 8 7 39 39 H 1.08996 * 109.40845 * 297.49236 * 19 18 8 40 40 H 1.08997 * 109.48913 * 177.50765 * 19 18 8 41 41 H 1.09000 * 109.48403 * 301.17705 * 21 20 19 42 42 H 1.08996 * 109.48959 * 181.15202 * 21 20 19 43 43 H 1.09000 * 109.52459 * 182.48495 * 22 21 20 44 44 H 1.08996 * 109.57530 * 62.33105 * 22 21 20 45 45 H 1.08003 * 125.89123 * 0.02562 * 24 23 2 46 46 H 1.08999 * 109.47085 * 269.97272 * 27 26 25 47 47 H 1.09004 * 109.46880 * 29.97086 * 27 26 25 48 48 H 1.09000 * 109.47104 * 149.96987 * 27 26 25 49 49 H 1.08003 * 126.11858 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1190 6 7 1.7069 -0.2502 2.4545 7 6 2.1957 -0.9405 3.6506 8 6 1.7574 -0.1712 4.8984 9 7 0.3044 0.0143 4.8745 10 6 -0.5252 -1.0750 4.8926 11 1 -0.1112 -2.0702 4.8268 12 6 -1.8985 -0.8999 4.9956 13 7 -2.4030 0.3131 5.0763 14 14 -3.0303 -2.3857 5.0195 15 1 -3.2322 -2.8316 6.4215 16 1 -4.3401 -2.0199 4.4229 17 1 -2.4184 -3.4868 4.2331 18 6 2.4481 1.1958 4.9266 19 6 2.0669 1.9247 6.2179 20 8 2.4344 1.1244 7.3433 21 6 1.7816 -0.1457 7.3941 22 6 2.1530 -0.9588 6.1512 23 6 2.0322 -0.7103 -1.2306 24 6 1.7784 -2.0425 -1.5731 25 7 2.3773 -2.2938 -2.7088 26 7 3.0407 -1.1307 -3.1204 27 6 3.8397 -0.9797 -4.3390 28 6 2.8134 -0.1738 -2.1964 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.1489 0.5383 2.5436 33 1 1.7834 -1.9490 3.6821 34 1 3.2839 -0.9937 3.6201 35 1 -0.0699 0.9087 4.8460 36 1 -3.3625 0.4355 5.1479 37 1 3.5289 1.0585 4.8926 38 1 2.1274 1.7836 4.0665 39 1 0.9910 2.0989 6.2314 40 1 2.5904 2.8797 6.2645 41 1 0.7019 0.0012 7.4230 42 1 2.0994 -0.6825 8.2879 43 1 1.6215 -1.9103 6.1662 44 1 3.2274 -1.1419 6.1423 45 1 1.1870 -2.7418 -1.0006 46 1 4.8772 -1.2387 -4.1277 47 1 3.4505 -1.6412 -5.1130 48 1 3.7859 0.0532 -4.6831 49 1 3.1875 0.8390 -2.2234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278734506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:24 Heat of formation + Delta-G solvation = -16.627947 kcal Electronic energy + Delta-G solvation = -30406.236321 eV Core-core repulsion = 26369.468729 eV Total energy + Delta-G solvation = -4036.767592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22174 -40.99572 -40.03352 -37.26459 -35.33452 -35.01654 -33.87861 -33.26587 -31.94944 -30.91852 -30.36483 -28.18731 -27.29906 -25.93171 -25.16285 -24.35537 -23.37473 -22.08870 -21.66450 -20.59902 -20.02565 -19.07818 -18.15325 -17.50207 -17.06668 -16.89367 -16.69717 -16.30577 -16.27951 -16.04423 -15.75130 -15.36140 -15.32476 -15.17686 -14.83257 -14.47415 -14.10253 -13.87753 -13.67479 -13.64459 -13.47406 -13.35671 -13.14390 -13.06463 -12.89405 -12.84393 -12.65613 -12.46961 -12.42851 -12.21191 -12.07499 -11.72783 -11.44191 -11.36806 -11.10250 -10.96901 -10.63414 -10.30716 -10.26795 -9.79808 -9.28752 -8.93408 -7.88200 -5.13677 0.99118 1.45664 1.49942 1.54139 1.74720 1.79452 1.85177 2.55218 2.62999 3.10358 3.45102 3.63073 3.79366 3.89407 3.92914 4.03563 4.05336 4.19158 4.26474 4.26902 4.30885 4.40548 4.46950 4.51184 4.52243 4.65006 4.71423 4.80039 4.82057 4.85712 4.87801 4.89707 4.92473 5.04603 5.07609 5.13128 5.20647 5.25873 5.31798 5.37812 5.38607 5.63807 5.67213 5.72319 6.22003 6.34081 6.39568 6.75694 6.81914 7.43938 7.48102 8.12253 8.40217 9.33715 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003468 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.147162 B = 8071.718713 C = 9551.489446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 H 0.132 0.868 4 C 0.509 3.491 5 O -0.588 6.588 6 N -0.697 5.697 7 C 0.128 3.872 8 C 0.189 3.811 9 N -0.710 5.710 10 C -0.210 4.210 11 H 0.062 0.938 12 C -0.055 4.055 13 N -0.956 5.956 14 Si 0.943 3.057 15 H -0.294 1.294 16 H -0.299 1.299 17 H -0.283 1.283 18 C -0.141 4.141 19 C 0.064 3.936 20 O -0.398 6.398 21 C 0.076 3.924 22 C -0.151 4.151 23 C -0.233 4.233 24 C 0.060 3.940 25 N -0.342 5.342 26 N -0.381 5.381 27 C 0.094 3.906 28 C 0.071 3.929 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.407 0.593 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.379 0.621 36 H 0.248 0.752 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.112 0.888 41 H 0.036 0.964 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.161 0.839 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.680 7.073 -12.406 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.039 4.039 3 H 0.150 0.850 4 C 0.296 3.704 5 O -0.468 6.468 6 N -0.348 5.348 7 C 0.001 3.999 8 C 0.098 3.902 9 N -0.351 5.351 10 C -0.343 4.343 11 H 0.080 0.920 12 C -0.248 4.248 13 N -0.606 5.606 14 Si 0.775 3.225 15 H -0.221 1.221 16 H -0.226 1.226 17 H -0.209 1.209 18 C -0.179 4.179 19 C -0.013 4.013 20 O -0.317 6.317 21 C 0.000 4.000 22 C -0.191 4.191 23 C -0.244 4.244 24 C -0.125 4.125 25 N -0.164 5.164 26 N -0.164 5.164 27 C -0.045 4.045 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.244 0.756 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.213 0.787 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.178 0.822 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.140 0.860 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 13.566 5.399 -13.381 19.804 hybrid contribution -1.972 -0.434 0.787 2.167 sum 11.594 4.965 -12.593 17.823 Atomic orbital electron populations 1.21697 0.92177 1.01849 1.03286 1.19478 0.96895 1.00091 0.87434 0.85029 1.21168 0.79471 0.84320 0.85425 1.90640 1.40486 1.28257 1.87437 1.45735 1.52376 1.31926 1.04741 1.21571 0.97177 0.95458 0.85685 1.19994 0.84415 0.94225 0.91594 1.42467 0.99307 1.05515 1.87841 1.19137 0.87839 0.88006 1.39271 0.92049 1.25101 0.97974 0.97444 1.04301 1.69729 1.11190 1.20300 1.59429 0.85601 0.79213 0.80596 0.77065 1.22127 1.22603 1.20926 1.22299 1.01187 0.95456 0.98989 1.22600 0.99508 0.94199 0.84990 1.87795 1.68190 1.29249 1.46507 1.22342 0.96242 0.83742 0.97723 1.22428 1.00918 0.99553 0.96225 1.19646 1.09734 0.94917 1.00146 1.23586 0.98723 0.96790 0.93385 1.77252 1.15283 1.07892 1.16017 1.48768 1.39825 1.07588 1.20182 1.22190 0.94314 1.05674 0.82351 1.22854 0.98087 0.97027 0.89628 0.91870 0.94348 0.89767 0.75633 0.95206 0.92099 0.78744 0.94321 0.89546 0.89667 0.94392 0.86970 0.94602 0.88538 0.92302 0.90619 0.82200 0.90034 0.89428 0.86038 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.98 71.98 0.65 -2.66 16 2 C -0.02 -0.41 3.09 -12.29 -0.04 -0.45 16 3 H 0.13 2.25 8.11 -2.39 -0.02 2.23 16 4 C 0.51 16.61 7.11 87.66 0.62 17.24 16 5 O -0.59 -23.95 15.36 -3.02 -0.05 -23.99 16 6 N -0.70 -22.17 5.02 -463.07 -2.33 -24.50 16 7 C 0.13 4.44 4.36 86.38 0.38 4.81 16 8 C 0.19 6.32 0.41 3.73 0.00 6.32 16 9 N -0.71 -29.45 3.60 -302.81 -1.09 -30.55 16 10 C -0.21 -10.32 8.67 84.04 0.73 -9.59 16 11 H 0.06 3.10 6.78 -2.91 -0.02 3.08 16 12 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 13 N -0.96 -52.95 13.07 21.65 0.28 -52.66 16 14 Si 0.94 44.75 29.55 68.60 2.03 46.78 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C -0.14 -3.82 4.80 30.69 0.15 -3.68 16 19 C 0.06 1.82 6.67 72.02 0.48 2.30 16 20 O -0.40 -12.98 10.77 -148.98 -1.60 -14.58 16 21 C 0.08 2.58 6.68 72.01 0.48 3.06 16 22 C -0.15 -5.05 4.79 30.68 0.15 -4.91 16 23 C -0.23 -6.10 4.37 -20.14 -0.09 -6.19 16 24 C 0.06 1.91 10.76 85.24 0.92 2.83 16 25 N -0.34 -10.53 12.58 -57.02 -0.72 -11.25 16 26 N -0.38 -8.43 4.01 -369.57 -1.48 -9.91 16 27 C 0.09 1.06 11.47 127.77 1.47 2.52 16 28 C 0.07 1.41 11.38 83.54 0.95 2.36 16 29 H 0.06 1.66 7.56 -2.39 -0.02 1.64 16 30 H 0.04 1.12 8.03 -2.39 -0.02 1.10 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 12.15 6.84 -92.71 -0.63 11.52 16 33 H 0.03 1.23 7.47 -2.39 -0.02 1.21 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.38 16.81 6.82 -92.70 -0.63 16.18 16 36 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.07 7.40 -2.38 -0.02 2.05 16 39 H 0.04 1.27 7.15 -2.39 -0.02 1.25 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.04 1.45 7.75 -2.39 -0.02 1.44 16 42 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.06 2.17 7.20 -2.39 -0.02 2.15 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.16 5.34 8.06 -2.91 -0.02 5.32 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.11 393.13 2.05 -69.06 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.30 Total: 40.06 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.31 Total: 11.55 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.34 Total: -128.87 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.65 Total: -38.57 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.11 2.05 -69.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278734506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.435 kcal (2) G-P(sol) polarization free energy of solvation -71.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds